Cla003724.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003724
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 13307359 .. 13307896 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTTCTTAATGCTTTTGCATCCATATTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTCCCCTCCCCAAAAGGAAATCAACGGTGTTCAATTTTAAACTTTATTTCTCTCCCCAGTGTTTTAGTTGCGAAAGTGCGCTCTAGAATTTTGAAATGACAACAAGATAGCCTTTCCCTTTCCTCTGCTTTAAAATAAAAAGTTTGGCGAAACGTTTCAGCAAATAAGGTAATGTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

mRNA sequence

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

Coding sequence (CDS)

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

Protein sequence

MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHSASSSALMTSMLSITRHSCGWLPEGA

Homology

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BLAST of Cla003724 vs. Swiss-Prot
Match: NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 5  GARSVFRSFSGSARRAAAHIGSQAKPSSSSP--FRMATSKPLSHRTFRCAPEMSFCLESM 64
          GARS+ R+   S+R AAA  G  A  + S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLRA--ASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSITRHSCGWLPE 91
          +P+HSA++SALMTS LSI+  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.1e-40
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPE 91
          SMMPFHS SSSALMTSMLSI+RHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: K7LW44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-23
Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  ASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLES 61
          A   ARS+FRS S  ARRAA  +GS AK ++ SPFR+A++KPLS  T RC  E+SFC+ES
Sbjct: 5  AGAAARSIFRSCS--ARRAAFRLGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVES 64

Query: 62 MMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          M+P+HSA++SALMTSMLS++RHS GWLPEG+
Sbjct: 65 MLPYHSATASALMTSMLSVSRHSYGWLPEGS 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0B2R7Z5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007639 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.4e-23
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1


Query: 2  ASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLES 61
          A   ARS+FRS S  ARRAA  +GS AK ++ SPFR+A++KPLS  T RC  E+SFC+ES
Sbjct: 5  AGAAARSIFRSCS--ARRAAFRLGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVES 64

Query: 62 MMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          M+P+HSA++SALMTSMLS++RHS GWLPEG
Sbjct: 65 MLPYHSATASALMTSMLSVSRHSYGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|700208077|gb|KGN63196.1| (hypothetical protein Csa_2G408420 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|700208074|gb|KGN63193.1| (hypothetical protein Csa_2G408390 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.1e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673327|ref|XP_011649972.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-41
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673345|ref|XP_011649976.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673340|ref|XP_011649974.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

The following BLAST results are available for this feature:

BLAST of Cla003724 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFD6_ARATH	1.6e-10	44.32	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of Cla003724 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT36_CUCSA	1.6e-41	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1	[more]
A0A0A0LN06_CUCSA	3.5e-41	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1	[more]
A0A0A0LMP1_CUCSA	5.1e-40	93.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1	[more]
K7LW44_SOYBN	5.7e-23	63.74	Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1	[more]
A0A0B2R7Z5_GLYSO	7.4e-23	64.44	Uncharacterized protein OS=Glycine soja GN=glysoja_007639 PE=4 SV=1	[more]

BLAST of Cla003724 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208077\|gb\|KGN63196.1\|	2.3e-41	93.48	hypothetical protein Csa_2G408420 [Cucumis sativus]	[more]
gi\|700208074\|gb\|KGN63193.1\|	5.1e-41	93.48	hypothetical protein Csa_2G408390 [Cucumis sativus]	[more]
gi\|778673327\|ref\|XP_011649972.1\|	6.6e-41	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673345\|ref\|XP_011649976.1\|	1.5e-40	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673340\|ref\|XP_011649974.1\|	1.5e-40	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0000741	karyogamy

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla003724	Cla003724	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla003724	Cla003724.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla003724.1.cds2	Cla003724.1.cds2	CDS
Cla003724.1.cds1	Cla003724.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..91 score: 2.9