WMU13029 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU13029
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr2 : 13306228 .. 13308019 (+)
Sequence length	450

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAAGCAAGTCATTCCTTCCTGCTTCTCGATCCTCATCTAGTCTTGTCTTTGCCTTCGGGAAGCCAACCGCAACTGTGGCGGGTGATAGAGAGCATTGAAGTCATCAAAGCTGACGACGACGCAGAGTGAAATGGCATCATCGACTCCAGACAGAAGCTCATCTCAGGCGCACACCTGAAAGTTCGATGAGAGAGGGGCTTGCTAGTTGCCATGCGAAAGGGAGAGCTTGATGACGGCTTAGCTTGAGAGCCGATGTGAGCAGCAGCACGGCGTGCCGAACCGGAGAATGACCGGAAAACAGACCTGGCACCGATGGAAGCCATTGTTTATGAGAAGAAATGATAGATTCTAAAAGGTGGTTCTTGGTACGGAATATGAACAAGAACGGACTCTTGCTTCTTTGGCTGCTTGTAGGGTTAAAGCTAAAACCCTACTTTGGGTCTGAGGGGC

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	3
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU13029 vs. TrEMBL
Match: A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = -2


Query: 51  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 110
           HIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 111 HSCGWLPEG 170
           HSCGWLPEG
Sbjct: 83  HSCGWLPEG 91

Query: 171  230
           
Sbjct: 143  91

Query: 231  258
           
Sbjct: 203  91

[Close]

BLAST of WMU13029 vs. TrEMBL
Match: A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-21
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = -2


Query: 51  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 110
           HIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 111 HSCGWLPEG 170
           HSCGWLPEG
Sbjct: 83  HSCGWLPEG 91

Query: 171  230
           
Sbjct: 143  91

Query: 231  258
           
Sbjct: 203  91

[Close]

BLAST of WMU13029 vs. TrEMBL
Match: A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 50/68 (73.53%), Postives = 51/68 (75.00%), Query Frame = -2


Query: 54  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 113
           HIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 114 HSCGWLPE 173
           HSCGWLPE
Sbjct: 83  HSCGWLPE 90

Query: 174  233
           
Sbjct: 143  90

Query: 234  258
           
Sbjct: 203  90

[Close]

BLAST of WMU13029 vs. TrEMBL
Match: K7LW43_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.5e-12
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = -2


Query: 39  IGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXRH 98
           +GS AK ++ SPFR+A++KPLS  T RC  E+SFC+ESM+P+H               RH
Sbjct: 25  LGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVESMLPYHSATASALMTSMLSVSRH 84

Query: 99  SCGWLPEGKDKT 158
           S GWLPEGK+KT
Sbjct: 85  SYGWLPEGKEKT 95

Query: 159  218
           
Sbjct: 145  95

Query: 219  255
           
Sbjct: 205  95

[Close]

BLAST of WMU13029 vs. TrEMBL
Match: K7M2M1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G294600 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -2


Query: 39  IGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXRH 98
           +GS+AK ++ SPFR+A+++PLS  T RC  E+SFC+ESM+P+H               RH
Sbjct: 53  LGSEAK-AARSPFRVASNQPLSQSTLRCPVELSFCVESMLPYHTATASALMTSMLSVSRH 112

Query: 99  SCGWLPEGKDKT 158
           S GWLPEGK+KT
Sbjct: 113 SYGWLPEGKEKT 123

Query: 159  218
           
Sbjct: 173  123

Query: 219  255
           
Sbjct: 233  123

[Close]

BLAST of WMU13029 vs. NCBI nr
Match: gi|778673327|ref|XP_011649972.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-24
Identity = 56/74 (75.68%), Postives = 57/74 (77.03%), Query Frame = -2


Query: 36  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 95
           HIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 96  HSCGWLPEGKDKTR 155
           HSCGWLPEGKDKTR
Sbjct: 83  HSCGWLPEGKDKTR 96

Query: 156  215
           
Sbjct: 143  96

Query: 216  258
           
Sbjct: 203  96

[Close]

BLAST of WMU13029 vs. NCBI nr
Match: gi|778673340|ref|XP_011649974.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 56/74 (75.68%), Postives = 57/74 (77.03%), Query Frame = -2


Query: 36  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 95
           HIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 96  HSCGWLPEGKDKTR 155
           HSCGWLPEGKDKTR
Sbjct: 83  HSCGWLPEGKDKTR 96

Query: 156  215
           
Sbjct: 143  96

Query: 216  258
           
Sbjct: 203  96

[Close]

BLAST of WMU13029 vs. NCBI nr
Match: gi|700208077|gb|KGN63196.1| (hypothetical protein Csa_2G408420 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 7.2e-21
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = -2


Query: 51  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 110
           HIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 111 HSCGWLPEG 170
           HSCGWLPEG
Sbjct: 83  HSCGWLPEG 91

Query: 171  230
           
Sbjct: 143  91

Query: 231  258
           
Sbjct: 203  91

[Close]

BLAST of WMU13029 vs. NCBI nr
Match: gi|778673345|ref|XP_011649976.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 9.5e-21
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = -2


Query: 48  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 107
           HIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 108 HSCGWLPEGK 167
           HSCGWLPEG+
Sbjct: 83  HSCGWLPEGR 92

Query: 168  227
           
Sbjct: 143  92

Query: 228  258
           
Sbjct: 203  92

[Close]

BLAST of WMU13029 vs. NCBI nr
Match: gi|700208074|gb|KGN63193.1| (hypothetical protein Csa_2G408390 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = -2


Query: 51  HIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHXXXXXXXXXXXXXXXR 110
           HIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFH               R
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 111 HSCGWLPEG 170
           HSCGWLPEG
Sbjct: 83  HSCGWLPEG 91

Query: 171  230
           
Sbjct: 143  91

Query: 231  258
           
Sbjct: 203  91

The following BLAST results are available for this feature:

BLAST of WMU13029 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT36_CUCSA	2.3e-21	73.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1	[more]
A0A0A0LN06_CUCSA	5.0e-21	73.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1	[more]
A0A0A0LMP1_CUCSA	2.5e-20	73.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1	[more]
K7LW43_SOYBN	9.5e-12	51.39	Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1	[more]
K7M2M1_SOYBN	1.6e-11	50.00	Uncharacterized protein OS=Glycine max GN=GLYMA_13G294600 PE=4 SV=1	[more]

BLAST of WMU13029 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673327\|ref\|XP_011649972.1\|	7.0e-24	75.68	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673340\|ref\|XP_011649974.1\|	1.6e-23	75.68	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|700208077\|gb\|KGN63196.1\|	7.2e-21	73.91	hypothetical protein Csa_2G408420 [Cucumis sativus]	[more]
gi\|778673345\|ref\|XP_011649976.1\|	9.5e-21	72.86	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|700208074\|gb\|KGN63193.1\|	1.6e-20	73.91	hypothetical protein Csa_2G408390 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0000741	karyogamy

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003724	Cla003724	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0002907	S1_0002907	EST
S1_0071517	S1_0071517	EST
S2_0026989	S2_0026989	EST
S2_0076606	S2_0076606	EST
S2_0126136	S2_0126136	EST
S3_0155305	S3_0155305	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..80 score: 8.3