Cla003258 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003258
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000340 Dual specificity phosphatase, catalytic domain
Location	Chr9 : 32810329 .. 32810643 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGGTGAAGATCTTGTTCCGGGGTTTGATCCAGTGCCAATTAGGGATATCGAGAGCGAAAGTATTCAAGGATTTGGACGCTTTGCAGTGGATGAACATAATGAAAAAGGAGGAGAAAGGTTGGAGTTCATAAGAGTGTTGAATGGTTTGGAACGAGGACAACGATATGGTCGAATAGTTTTCACTCTTGTGTTGTTAGCTAAAACCTCTCGAGGAATCGAATGGACTTATATCGCTAGCGTCTTTTATAATCAACGAGCGGCACTACTTCTTCTTGATTGGAATTCTGTACTTCCAGAATATAATTAG

mRNA sequence

ATGAGTAGTGGTGAAGATCTTGTTCCGGGGTTTGATCCAGTGCCAATTAGGGATATCGAGAGCGAAAGTATTCAAGGATTTGGACGCTTTGCAGTGGATGAACATAATGAAAAAGGAGGAGAAAGGTTGGAGTTCATAAGAGTGTTGAATGGTTTGGAACGAGGACAACGATATGGTCGAATAGTTTTCACTCTTGTGTTGTTAGCTAAAACCTCTCGAGGAATCGAATGGACTTATATCGCTAGCGTCTTTTATAATCAACGAGCGGCACTACTTCTTCTTGATTGGAATTCTGTACTTCCAGAATATAATTAG

Coding sequence (CDS)

ATGAGTAGTGGTGAAGATCTTGTTCCGGGGTTTGATCCAGTGCCAATTAGGGATATCGAGAGCGAAAGTATTCAAGGATTTGGACGCTTTGCAGTGGATGAACATAATGAAAAAGGAGGAGAAAGGTTGGAGTTCATAAGAGTGTTGAATGGTTTGGAACGAGGACAACGATATGGTCGAATAGTTTTCACTCTTGTGTTGTTAGCTAAAACCTCTCGAGGAATCGAATGGACTTATATCGCTAGCGTCTTTTATAATCAACGAGCGGCACTACTTCTTCTTGATTGGAATTCTGTACTTCCAGAATATAATTAG

Protein sequence

MSSGEDLVPGFDPVPIRDIESESIQGFGRFAVDEHNEKGGERLEFIRVLNGLERGQRYGRIVFTLVLLAKTSRGIEWTYIASVFYNQRAALLLLDWNSVLPEYN

Homology

[Close]

BLAST of Cla003258 vs. TrEMBL
Match: A0A0A0KRZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487690 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 1   MSSGEDLVPGFDP-VPIRDIESESIQGFGRFAVDEHNEKGGERLEFIRVLNGLERGQRYG 60
           MSS +  +P  DP VPI+D++SE I+GFG FAV EHNE  GE LEF++V+NGLE+G+R  
Sbjct: 1   MSSEDISIPKVDPAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGF 60

Query: 61  RIVFTLVLLAKTSRGIEWTYIASVFYNQRAALLLLDWNSVLPE 103
           RI FTLVL AK S GI WTY   VF NQRA + LL++ +VL E
Sbjct: 61  RIDFTLVLSAKNSIGIIWTYKVKVFLNQRAGVRLLEFEAVLNE 103

[Close]

BLAST of Cla003258 vs. TrEMBL
Match: A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 8   VPGFDPVPIRDIESESIQGFGRFAVDEHNEKG-GERLEFIRVLNGLERGQRYGRIVFTLV 67
           +P +D VPI+D++SE IQG G  AV  HNE   GE LEF++V+NGLE+G+R  +IV+TLV
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 68  LLAKTSRGIEWTYIASVFYNQRAALLLLDWNSVLPE 103
           L AK S GI WTY A V +N RAA+ L ++ +VLPE
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPE 110

[Close]

BLAST of Cla003258 vs. TrEMBL
Match: A0A0A0KNH4_CUCSA (Cystatin OS=Cucumis sativus GN=Csa_5G485690 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 13 PVPIRDIESESIQGFGRFAVDEHNEKGGERLEFIRVLNGLERGQRYGRIVFTLVLLAKTS 72
          PVPI+DI+S  IQG+ RFA + HNE  G++L+F R +NGLE+G+ Y  +  T    + T+
Sbjct: 10 PVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSYSILQST---GSVTT 69

Query: 73 RGIEWT 79
           GI WT
Sbjct: 70 HGI-WT 71

[Close]

BLAST of Cla003258 vs. NCBI nr
Match: gi|700196015|gb|KGN51192.1| (hypothetical protein Csa_5G487690 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-23
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 1   MSSGEDLVPGFDP-VPIRDIESESIQGFGRFAVDEHNEKGGERLEFIRVLNGLERGQRYG 60
           MSS +  +P  DP VPI+D++SE I+GFG FAV EHNE  GE LEF++V+NGLE+G+R  
Sbjct: 1   MSSEDISIPKVDPAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGF 60

Query: 61  RIVFTLVLLAKTSRGIEWTYIASVFYNQRAALLLLDWNSVLPE 103
           RI FTLVL AK S GI WTY   VF NQRA + LL++ +VL E
Sbjct: 61  RIDFTLVLSAKNSIGIIWTYKVKVFLNQRAGVRLLEFEAVLNE 103

[Close]

BLAST of Cla003258 vs. NCBI nr
Match: gi|700196016|gb|KGN51193.1| (hypothetical protein Csa_5G487700 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 8   VPGFDPVPIRDIESESIQGFGRFAVDEHNEKG-GERLEFIRVLNGLERGQRYGRIVFTLV 67
           +P +D VPI+D++SE IQG G  AV  HNE   GE LEF++V+NGLE+G+R  +IV+TLV
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 68  LLAKTSRGIEWTYIASVFYNQRAALLLLDWNSVLPE 103
           L AK S GI WTY A V +N RAA+ L ++ +VLPE
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPE 110

[Close]

BLAST of Cla003258 vs. NCBI nr
Match: gi|700196013|gb|KGN51190.1| (Cystatin [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 13 PVPIRDIESESIQGFGRFAVDEHNEKGGERLEFIRVLNGLERGQRYGRIVFTLVLLAKTS 72
          PVPI+DI+S  IQG+ RFA + HNE  G++L+F R +NGLE+G+ Y  +  T    + T+
Sbjct: 10 PVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSYSILQST---GSVTT 69

Query: 73 RGIEWT 79
           GI WT
Sbjct: 70 HGI-WT 71

The following BLAST results are available for this feature:

BLAST of Cla003258 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRZ8_CUCSA	1.7e-23	59.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487690 PE=4 SV=1	[more]
A0A0A0KNL2_CUCSA	1.0e-20	56.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1	[more]
A0A0A0KNH4_CUCSA	3.8e-07	48.48	Cystatin OS=Cucumis sativus GN=Csa_5G485690 PE=4 SV=1	[more]

BLAST of Cla003258 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196015\|gb\|KGN51192.1\|	2.4e-23	59.22	hypothetical protein Csa_5G487690 [Cucumis sativus]	[more]
gi\|700196016\|gb\|KGN51193.1\|	1.5e-20	56.25	hypothetical protein Csa_5G487700 [Cucumis sativus]	[more]
gi\|700196013\|gb\|KGN51190.1\|	5.4e-07	48.48	Cystatin [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010951	negative regulation of endopeptidase activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU78523	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003258	Cla003258.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU78523	WMU78523	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PRODOM	PD001231		coord: 21..84 score: 4.
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 16..89 score: 6.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 16..51 score: 2.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 21..85 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003258	Cla97C09G182210	Watermelon (97103) v2	wmwmbB042
Cla003258	Csa5G485690	Cucumber (Chinese Long) v2	cuwmB363
Cla003258	ClCG09G020790	Watermelon (Charleston Gray)	wcgwmB008
Cla003258	CSPI05G16500	Wild cucumber (PI 183967)	cpiwmB369
Cla003258	Cucsa.275310	Cucumber (Gy14) v1	cgywmB507
Cla003258	Lsi02G017400	Bottle gourd (USVL1VR-Ls)	lsiwmB170
Cla003258	CsGy5G016360	Cucumber (Gy14) v2	cgybwmB339
Cla003258	CsaV3_5G025580	Cucumber (Chinese Long) v3	cucwmB387
Cla003258	Bhi06G000662	Wax gourd	wgowmB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003258	Cucurbita pepo (Zucchini)	cpewmB753