Cla003043 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003043
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pollen Ole e 1 allergen and extensin family protein (AHRD V1 ***- Q9FMQ8_ARATH)
Location	Chr1 : 15476741 .. 15477136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTGTAAGAGTGTGAAAAACCTAACGATAGCAATTACCGAAGCCGATGGATCGTTTGAAACCTCACTTCCTTCCGACGTGGCCTCCATCGACTTCGAAGCAGCTTCTTCTTCTCCCAAGTGCATAGCCAAGCTTGTTGGGGGATCTCACCAGCTCTTTGCTTCAAGGAAAGATATGGCTTCTACTGTCATCAAGGAAACCAACTCCAACTTCTTCACAATTTCTAGTCCTCTCAAGTTCTCCACATGCAAACAAAACATAAAATGCAAAGCCATGAAAAAAGAGTTTGCTGCAGATTCAAAGACCATCGATTTGCCTTTGCCACCTGAGTGGGGCTTCCCACCCACAAGCTACTATCTCCCAGTGCTTCCCATTATAGGCATTCCTTGA

mRNA sequence

ATGGTGAAGTGTAAGAGTGTGAAAAACCTAACGATAGCAATTACCGAAGCCGATGGATCGTTTGAAACCTCACTTCCTTCCGACGTGGCCTCCATCGACTTCGAAGCAGCTTCTTCTTCTCCCAAGTGCATAGCCAAGCTTGTTGGGGGATCTCACCAGCTCTTTGCTTCAAGGAAAGATATGGCTTCTACTGTCATCAAGGAAACCAACTCCAACTTCTTCACAATTTCTAGTCCTCTCAAGTTCTCCACATGCAAACAAAACATAAAATGCAAAGCCATGAAAAAAGAGTTTGCTGCAGATTCAAAGACCATCGATTTGCCTTTGCCACCTGAGTGGGGCTTCCCACCCACAAGCTACTATCTCCCAGTGCTTCCCATTATAGGCATTCCTTGA

Coding sequence (CDS)

ATGGTGAAGTGTAAGAGTGTGAAAAACCTAACGATAGCAATTACCGAAGCCGATGGATCGTTTGAAACCTCACTTCCTTCCGACGTGGCCTCCATCGACTTCGAAGCAGCTTCTTCTTCTCCCAAGTGCATAGCCAAGCTTGTTGGGGGATCTCACCAGCTCTTTGCTTCAAGGAAAGATATGGCTTCTACTGTCATCAAGGAAACCAACTCCAACTTCTTCACAATTTCTAGTCCTCTCAAGTTCTCCACATGCAAACAAAACATAAAATGCAAAGCCATGAAAAAAGAGTTTGCTGCAGATTCAAAGACCATCGATTTGCCTTTGCCACCTGAGTGGGGCTTCCCACCCACAAGCTACTATCTCCCAGTGCTTCCCATTATAGGCATTCCTTGA

Protein sequence

MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKDMASTVIKETNSNFFTISSPLKFSTCKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTSYYLPVLPIIGIP

Homology

[Close]

BLAST of Cla003043 vs. TrEMBL
Match: A0A0A0LYA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165730 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.9e-50
Identity = 102/132 (77.27%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           MVKC+  KNLTIAIT+ADGSFETSLPS++AS   EAA SSPKCIAKL+GGSHQLFASRK+
Sbjct: 50  MVKCERAKNLTIAITKADGSFETSLPSNMAS---EAAPSSPKCIAKLLGGSHQLFASRKE 109

Query: 61  MASTVIKETNSNFFTISSPLKFSTCKQ-NIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
           M ST+IKETNS FFTI++ LKFSTCK+ +  CKA+KKE   DSKT D PLPPEWGFPPTS
Sbjct: 110 MVSTIIKETNSKFFTIATALKFSTCKEISRNCKAIKKESVEDSKTFDFPLPPEWGFPPTS 169

Query: 121 YYLPVLPIIGIP 132
           YY+PVLPIIGIP
Sbjct: 170 YYIPVLPIIGIP 178

[Close]

BLAST of Cla003043 vs. TrEMBL
Match: I3SKA6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-28
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           +VKC+ VK L +A TE +G F+  LPSD         SS+  C+AKLVGG  QL+A+R++
Sbjct: 48  LVKCEGVKKLALASTEDNGFFKVDLPSDKTK-----PSSAGNCLAKLVGGPVQLYATRQN 107

Query: 61  MASTVIKETNSNFFTISSPLKF-STCKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
             S +IK    N +TIS+PL F  +C QN  CKA K      SKT+DLPLPPEWG  P+S
Sbjct: 108 QVSQIIKSQEPNSYTISTPLSFMKSCPQNTNCKAAKP--VGSSKTVDLPLPPEWGLAPSS 167

Query: 121 YYLPVLPIIGIP 132
           YY+P +PIIGIP
Sbjct: 168 YYVPFIPIIGIP 172

[Close]

BLAST of Cla003043 vs. TrEMBL
Match: I3SLU1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-28
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           +VKC+ VK L +A TE +G F+  LPSD         SS+  C+AKLVGG  QL+A+R++
Sbjct: 48  LVKCEGVKKLALASTEDNGFFKVDLPSDKTK-----PSSAGNCLAKLVGGPVQLYATRQN 107

Query: 61  MASTVIKETNSNFFTISSPLKF-STCKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
             S +IK    N +TIS+PL F  +C QN  CKA K      SKT+DLPLPPEWG  P+S
Sbjct: 108 QVSQIIKSQEPNSYTISTPLSFMKSCPQNTNCKAAKP--VGSSKTVDLPLPPEWGLAPSS 167

Query: 121 YYLPVLPIIGIP 132
           YY+P +PIIGIP
Sbjct: 168 YYVPFIPIIGIP 172

[Close]

BLAST of Cla003043 vs. TrEMBL
Match: I1LRI2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G091100 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.9e-28
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 2   VKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKDM 61
           V+C  VK L +A TE DGSF+  LP     +D    SS   C+AKL+GG  QL+ SR++ 
Sbjct: 46  VRCDGVKKLALATTENDGSFKVDLP-----LDHTKPSSVKNCLAKLLGGPVQLYVSRENQ 105

Query: 62  ASTVIKETNSNFFTISSPLKFST-CKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTSY 121
            S +IK    N +TIS+PL F T C  N KCKA KK     SKT+DLPLPPEWG  P+SY
Sbjct: 106 VSQIIKGKEQNSYTISTPLSFRTSCPLNTKCKAGKK--VGSSKTVDLPLPPEWGLAPSSY 165

Query: 122 YLPVLPIIGIP 132
           Y+P  PIIGIP
Sbjct: 166 YVPFFPIIGIP 169

[Close]

BLAST of Cla003043 vs. TrEMBL
Match: A0A0B2QN61_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_006641 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.9e-28
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 2   VKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKDM 61
           V+C  VK L +A TE DGSF+  LP     +D    SS   C+AKL+GG  QL+ SR++ 
Sbjct: 49  VRCDGVKKLALATTENDGSFKVDLP-----LDHTKPSSVKNCLAKLLGGPVQLYVSRENQ 108

Query: 62  ASTVIKETNSNFFTISSPLKFST-CKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTSY 121
            S +IK    N +TIS+PL F T C  N KCKA KK     SKT+DLPLPPEWG  P+SY
Sbjct: 109 VSQIIKGKEQNSYTISTPLSFRTSCPLNTKCKAGKK--VGSSKTVDLPLPPEWGLAPSSY 168

Query: 122 YLPVLPIIGIP 132
           Y+P  PIIGIP
Sbjct: 169 YVPFFPIIGIP 172

[Close]

BLAST of Cla003043 vs. NCBI nr
Match: gi|659071656|ref|XP_008461260.1| (PREDICTED: uncharacterized protein LOC103499896 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           MVKC+ VKNLTIAIT+ADGSFET LPSD+AS+D EAA   PKCIAKLVGGSHQLFASRK+
Sbjct: 52  MVKCERVKNLTIAITKADGSFETPLPSDMASVDSEAAPPPPKCIAKLVGGSHQLFASRKE 111

Query: 61  MASTVIKETNSNFFTISSPLKFSTCKQ-NIKCKAMKKEFAADSKTIDLP-LPPEWGFPPT 120
           + ST+IKETNS FFTI++ L+FSTCK+ N KCKA+KKE   DSKT DLP LPPEWGFPPT
Sbjct: 112 LVSTIIKETNSKFFTIATALRFSTCKEINRKCKAIKKESIEDSKTFDLPNLPPEWGFPPT 171

Query: 121 SYYLPVLPIIGIP 132
           SYYLPVLPIIGIP
Sbjct: 172 SYYLPVLPIIGIP 184

[Close]

BLAST of Cla003043 vs. NCBI nr
Match: gi|449443456|ref|XP_004139493.1| (PREDICTED: uncharacterized protein LOC101207654 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 8.5e-50
Identity = 102/132 (77.27%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           MVKC+  KNLTIAIT+ADGSFETSLPS++AS   EAA SSPKCIAKL+GGSHQLFASRK+
Sbjct: 50  MVKCERAKNLTIAITKADGSFETSLPSNMAS---EAAPSSPKCIAKLLGGSHQLFASRKE 109

Query: 61  MASTVIKETNSNFFTISSPLKFSTCKQ-NIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
           M ST+IKETNS FFTI++ LKFSTCK+ +  CKA+KKE   DSKT D PLPPEWGFPPTS
Sbjct: 110 MVSTIIKETNSKFFTIATALKFSTCKEISRNCKAIKKESVEDSKTFDFPLPPEWGFPPTS 169

Query: 121 YYLPVLPIIGIP 132
           YY+PVLPIIGIP
Sbjct: 170 YYIPVLPIIGIP 178

[Close]

BLAST of Cla003043 vs. NCBI nr
Match: gi|694405986|ref|XP_009377823.1| (PREDICTED: uncharacterized protein LOC103966390 [Pyrus x bretschneideri])

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-28
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           +VKC  VK + +A+TE DGSFE  LPS+    +   +  +  C+A+++GG  QL+ASRK 
Sbjct: 48  LVKCDKVKKMAMAVTENDGSFEAKLPSN----NNTKSPDAKNCLARILGGPDQLYASRKF 107

Query: 61  MASTVIKETNSNFFTISSPLKFST-CKQNIK---CKAMKKEFAADSKTIDLPLPPEWGFP 120
           MAS ++K  +SN +T ++PL FST C  NIK   CKAM K     SKTI+LPLPPEWG  
Sbjct: 108 MASEIVKIQDSNSYTTTTPLGFSTSCPLNIKDAACKAMNK--FGSSKTINLPLPPEWGLA 167

Query: 121 PTSYYLPVLPIIGIP 132
           P+SYY+P +PIIGIP
Sbjct: 168 PSSYYIPFIPIIGIP 176

[Close]

BLAST of Cla003043 vs. NCBI nr
Match: gi|388506334|gb|AFK41233.1| (unknown [Lotus japonicus])

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-28
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           +VKC+ VK L +A TE +G F+  LPSD         SS+  C+AKLVGG  QL+A+R++
Sbjct: 48  LVKCEGVKKLALASTEDNGFFKVDLPSDKTK-----PSSAGNCLAKLVGGPVQLYATRQN 107

Query: 61  MASTVIKETNSNFFTISSPLKF-STCKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
             S +IK    N +TIS+PL F  +C QN  CKA K      SKT+DLPLPPEWG  P+S
Sbjct: 108 QVSQIIKSQEPNSYTISTPLSFMKSCPQNTNCKAAKP--VGSSKTVDLPLPPEWGLAPSS 167

Query: 121 YYLPVLPIIGIP 132
           YY+P +PIIGIP
Sbjct: 168 YYVPFIPIIGIP 172

[Close]

BLAST of Cla003043 vs. NCBI nr
Match: gi|388505264|gb|AFK40698.1| (unknown [Lotus japonicus])

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-28
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MVKCKSVKNLTIAITEADGSFETSLPSDVASIDFEAASSSPKCIAKLVGGSHQLFASRKD 60
           +VKC+ VK L +A TE +G F+  LPSD         SS+  C+AKLVGG  QL+A+R++
Sbjct: 48  LVKCEGVKKLALASTEDNGFFKVDLPSDKTK-----PSSAGNCLAKLVGGPVQLYATRQN 107

Query: 61  MASTVIKETNSNFFTISSPLKF-STCKQNIKCKAMKKEFAADSKTIDLPLPPEWGFPPTS 120
             S +IK    N +TIS+PL F  +C QN  CKA K      SKT+DLPLPPEWG  P+S
Sbjct: 108 QVSQIIKSQEPNSYTISTPLSFMKSCPQNTNCKAAKP--VGSSKTVDLPLPPEWGLAPSS 167

Query: 121 YYLPVLPIIGIP 132
           YY+P +PIIGIP
Sbjct: 168 YYVPFIPIIGIP 172

The following BLAST results are available for this feature:

BLAST of Cla003043 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYA1_CUCSA	5.9e-50	77.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165730 PE=4 SV=1	[more]
I3SKA6_LOTJA	2.9e-28	51.52	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I3SLU1_LOTJA	2.9e-28	51.52	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1LRI2_SOYBN	4.9e-28	52.67	Uncharacterized protein OS=Glycine max GN=GLYMA_12G091100 PE=4 SV=1	[more]
A0A0B2QN61_GLYSO	4.9e-28	52.67	Uncharacterized protein OS=Glycine soja GN=glysoja_006641 PE=4 SV=1	[more]

BLAST of Cla003043 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071656\|ref\|XP_008461260.1\|	1.6e-51	78.95	PREDICTED: uncharacterized protein LOC103499896 [Cucumis melo]	[more]
gi\|449443456\|ref\|XP_004139493.1\|	8.5e-50	77.27	PREDICTED: uncharacterized protein LOC101207654 [Cucumis sativus]	[more]
gi\|694405986\|ref\|XP_009377823.1\|	4.1e-28	51.85	PREDICTED: uncharacterized protein LOC103966390 [Pyrus x bretschneideri]	[more]
gi\|388506334\|gb\|AFK41233.1\|	4.1e-28	51.52	unknown [Lotus japonicus]	[more]
gi\|388505264\|gb\|AFK40698.1\|	4.1e-28	51.52	unknown [Lotus japonicus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031225	anchored component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003043	Cla003043.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003043	Csa1G165730	Cucumber (Chinese Long) v2	cuwmB042
Cla003043	MELO3C004693	Melon (DHL92) v3.5.1	mewmB163
Cla003043	ClCG01G012070	Watermelon (Charleston Gray)	wcgwmB148
Cla003043	CSPI01G14820	Wild cucumber (PI 183967)	cpiwmB044
Cla003043	Cucsa.319830	Cucumber (Gy14) v1	cgywmB581
Cla003043	CmaCh18G006470	Cucurbita maxima (Rimu)	cmawmB384
Cla003043	CmoCh18G006750	Cucurbita moschata (Rifu)	cmowmB384
Cla003043	Lsi03G001290	Bottle gourd (USVL1VR-Ls)	lsiwmB264
Cla003043	Cp4.1LG09g05490	Cucurbita pepo (Zucchini)	cpewmB048
Cla003043	CsGy1G014660	Cucumber (Gy14) v2	cgybwmB043
Cla003043	MELO3C004693.2	Melon (DHL92) v3.6.1	medwmB159
Cla003043	Carg26263	Silver-seed gourd	carwmB0001
Cla003043	CsaV3_1G014930	Cucumber (Chinese Long) v3	cucwmB049
Cla003043	Bhi08G000037	Wax gourd	wgowmB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003043	Wax gourd	wgowmB504
Cla003043	Cucurbita maxima (Rimu)	cmawmB386
Cla003043	Cucurbita moschata (Rifu)	cmowmB376
Cla003043	Cucumber (Chinese Long) v2	cuwmB057
Cla003043	Cucumber (Gy14) v2	cgybwmB057
Cla003043	Melon (DHL92) v3.6.1	medwmB167
Cla003043	Silver-seed gourd	carwmB0002
Cla003043	Cucumber (Chinese Long) v3	cucwmB063
Cla003043	Watermelon (97103) v2	wmwmbB241