Cla003014 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003014
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	E3 ubiquitin-protein ligase CHFR (AHRD V1 -- CHFR_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr4 : 7106999 .. 7117526 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACCCTTTCGGTTTCCCTCCCAATGAATTCTCCCCTTCGGAAGTTATTGCTACCGGTTCCTTAATCATTGAAAAGGAATTTAATGCTCATTTAAATAACCTCTCTCTCGGAATTCCAAAGGTCAGTAGCCCCTCTTTTTCAGCAGCCCCTCCCCTTTTGGTCCTTTCAAAGAATAACCCTGATTCCTCTCCTCCAGCAATCGATTCTAACCCTTTGAAGCCAAAGAAGCGCCCTAACTTGCTCAAGCCGTACCCCAAGCACTTTGTTAGGAAAAAAACTTCATTTCTCAATTCTTGGTCCATGATGGTGAATTCGGATTTGCTTGAGAATTGTTGCGTTAAAGTGCAAATCCCAGGTTTGCTTCCAGAAAAACCGGGTATCACTTCCTCTGCTCAAGCCTCATTCTCCCATTCAGACTTCAAATTTCCAGGTTCTAAAGTTAATTTTGTAAGGGGTCTTCCAGCCAGTTTTTTAAATAAAGTTTGCCACAAAAATCAACCTTTAGATAGGGATTCGGATGGGGATTCTATAGCTAGTGCCAGCAGGGATGAGTTAGAAAAATTCGGATCGGAGGGTTTCCGCAAGGAAGAAGAGCTAAATGATGGGTTTGGCTTTGAATTTCGACAATTATTCCAATCAGAGGAAGGTCATTCGCTTGGTAAGGCTAAAGAATCCTTATTTTCTCCACTCGATACGAGTGAAATTCCACAACATTTGCATTCGATCATTGATGCTTGCGGTCTCGTTCTTGGTGAGTTTTATTTTAAGTTGTACACAATTATGAAGCTGTGTTGGATTAGCTCTCTTTAAAGGTTCTACCGTAGTGTGCAAGAGGCATGGAGGTATGTTTTGTAAGCTTCTCTAGTCGGATGGGCTATATCAAAAGCCTGGAAGGTATTTTGGCTGCTGCTCCTAGTCTCTCATAATTTACAAGATGGAGGGCCTGTTTGGTACATAGGATTTTCTACTAACTCTGTTTGTCCAGGACCTTTGCCGATCTTCTGAAAAAATCTTTGTCTATGGTGTTTAAGATCTAGGTCTGGCTTAGTCCAAGGGGAGGTTTTTGTTTGGTTTCCTCCAAATCACTTCGTCAGCTCTCAGGTTTCCAAGATTCTTCAGCTATCTTCAGCCCTCAAATAGTTGTGGCCCTACTGTCTCAAGTGTTCCTCCACTGCCAGTGTTTCCAGCTCGCTTTTGGTTAGGTTTCTTTGGATGATTGTATTTTATTCTCTTTTATCCCTAAAGTGTATTTGTCTCTTGTCAGCTTTTATGGTTGTTTCTCTGTTTTATTTTCAGTTCCTCCAGTTATCATTGTACTAGAGGTTTCGGCTCTTTTTAGTCTATCAATGAAAAAGTCATGTTTCATTTTAAAAAAAAAGATGAGAATTTATCAATTCTTGTTTAATTTAAGCCAATTGGAGAATATCTTATGCGCACCTTTGGTTTGGCTTTGAATATTTTCAGGAATTTTGTTCTTATTCAAATATTTTTATACAGAATCAAGAAAGATAACTGCAGAGATATTTCTTGTTGTTTGATTGAAATGTAGAACTATCTCGAGTAAAAGGTTTGTCTTATGGGACTTTTCTATCTTAATTTTCAGGGCATTTGAGCTATAAATTTGAGATGTTGTCAGACTCAAGAATATGCAAAGGCTTAAAGGTGATTGGTTAATTGTCATATTTTGGTTATCTAAATGTGATACTAGGTTCTATCATCCTTTTAGAAATACTCAATTTTAGCCATTGTTGAATTTGTCCAGATCTCTGTGGATGTTGAGCATGCAAAATGCAGTGTTTGCTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTTCACAACTTTTGGTGGGCCTATTAATTTGTTTCTGGTTGGCTAGTTCGTCTTTTAATATAGTTTTTCATTGAATTGTGTTGGTTTACAGCAATGGATGTTTCTCGGAGTGGTTAAAAAGATCCCAAGAGAAGCATACAAGTGTACTTTGTCCCCAGTGTAGAGCAGTTGTGCAGTTTGTTGGAAGAAACCACTACTTGCTAAACATTGCGGAGGTAATATCGTACTTAAGTATCTAAATGAAGAAAAATGTCTACTGGTATGCAGGATTTTATTGTAGTAGTATTTATTGTCTTGCACCACATCTTTCTGTTTGATGTAGGCTGTATGAATTTTATGGGGATTTGAGGGTTCATTAAGGGGTTATGAAAACAAGACTCCATGTGGAGTCTTGTAGTTGTTAAATAGAAACTTGAATAATATGAAATTTAGCTTTGGAGAAAAACTTTTAAGGAAAAACAGCAGTTTTTTTTAAATTTTTAAATTTTTTTGTTTAATTTTTTCTTAATAGAAACAAACATTAAAATGATATAGTGAAAAGAAACTAATGCTCCAAAATATAAGATCTCCAAATAGAAGACAAATTTAGGAGACAAACAAAACTATTGAAGAATACTGGCCAAAAAAATTTTTTTTTCAACCAAGAACCACAAGAGACCCCATAAGAAACGAAGAAACAAATTGAATCAAAACAAGCCAGGCCAAACAAAGAGACACGTCAAACCATAAAACTGATCAGATTGCACTGCGAAAGACCACAAAACTCCGAAAAAAGCCCTTATGAGAATTCACTACTGCACTTCAGGGATCCACCAAGGGTTTTTATTTTAGAAAGGCCACGTCAGTGAATCATTAATTATTTAACATATTTTGTTAATAGAGGGATCAAAGTCGAGCATTTCTCCAATGTTGGAGACTTGATTGTTCAATTTTGAAATCAACCGCAGATCATGAATCCACTAAGGTGTTTTTTTTGTGCCCCCTTACACAAAGGAAACAGTTTTGTTTGGTGTGATGGAAAAGATTTTTATTAGTGAAAAACCTCAATGTAGAGAGATAGACCTCTTGAAAGGCTATTGATATTGTAATTTCTCATTTTATATTACAATACAGTTATTTTCTTGTTTCTTGTAACCAAGGTCCTAACAGGATATGATATGGTAGATTTCCTAATTCCCCTGCATCAATTCTGCAGTTCTATAAACATTTTAATTCCTGTTGGACTAACTCTTTATTTTTATATATATATTCTTTTTCTTTTTCTTTTTCTTTCCAGTTTCTATCTCATAGCTGGTTGTCTGCTGGTTTTGTCTAGGATATATTGCGAGCTGATTCTTCCCTACAACGTTCGATTGAAGAAATTGCTATTTTGGATTCTTGTTCATTAATACAATCAAATCTGGTAAGTAATTGTATTTGTGATCATACTTGTGTATTAATGTGATGGCAATGATAGGAATGTCAATTTCTAAATTGTTACTATTGAATCGAACTGACATCTGCGACTGTAGCAAAAAGAACTAGTTTCCATGGAACAACAGGGATGCAAATATCAGTGTTTTCTTAAAAATTTTCCTTAATATCCTAGGGGAGGATCATCCGAGGATGTGATTATCAATATTTTAAGCAAGGTCCGAGGTTTTATAGGAAATTTACATGCCTCTTATAGAATTGACACAAGGGCTGGAATCTTTGTGTTTTGTGGAATAGTTAAAAGGATCGTTTCAGTTTGAAAACTAAGAAAAGTAGCTTTTAAAAACTTGTTTTTGTTTTTAAAATTTAGCTAAGATTACAACTCTTGAACTTAAGTAAGATGCTAATCAATGCATGAAATTGGGAGAAAATAGGCTTAATTTTTAAAAACCAAAAACAAAAAAAAAGAATAGCTACCAAATGGGGCCTTAGCTTTTATGGGAAGAAAGTTATTGGGGATTAATGCTTTCCAAAGTTAAGTTACTTTTTTATAATCATTATGTTTGGTAATGCTATGATATTTACCAATGCTTTCCTTTTTTTCTTTTTCCTTTTTTGAAAAGAACAAAACTTACTCGATTAATTTCTATTAAGGTTTCTTCAGTGAAATGTGAAAGGAAGAAGCCTTGAACCTGCATTTAATCTTTTAAATGTCGATGAACATCATCTCTTTTGATATAGTAACATGACTTGTCAATTGTTTTTGATGTAGTAGGATTAGGGTAAATTAGGGTATATTAGGGTATCTTGGTTAATCCTTAATTGATTAGGATTAGGATTAGTTTCTTTGATTAACTAGGATTAAGATTAATTTGCTTTCCAATTCTCTATAATATTTTTGTACTTTTAATTGATAATAAAGACTTTGAGTCTTGAAAATAATTAAAAATTTGATAATAAAGACCTTGATTTGATTTTTGGAGAGAGTTCTCCTTTTATCTCTTAGATTACATTAGTTTTGCCCTAATACATTTGCATTTAATGCCCAGTGAAATAAGAAAGTGTAACGACCCGACTCTCTAAGACTACTAATAGGGCCATTACCTTAAGCATGCATAGATTCGGAAGTAAACTTTTTACAACATAAGCAAAAAGAATCAAACCGTTTTATAATGTGAATAATTTTAATAAAATGAAAGTTTAAATGACATAAAACCTTAGTTTGGGGTACCCCTTAAATCATAAAAAAAAATTGAAAAATTTGCATAAAGTGTTTAATAGTACTGATACAAGAAAATAAAAGGTAAGTTCTCTCTTCTTTCTCCACTTTCCTCTCTCTTCCTGTTTCCTTTCTCTCTCTCTCTGGCGAATGATTTTCTTTGCTCCGGCGTCCTTCTTTCATTGATAAATATGGAAATAGTCAGCTGTAAGCTGATCGAAGATTTTTACTACATTTGGTCTGAATCTGATGTGTTTCATGTAGAAGATATGGAAGCAAACAAAATTCTCTCACTATCGAAATCTCATCTTCATTGGTTCATAGAGCAGATTTCAGATCTTTTACAAGGCACAAGTGACTGTTACTTTCAAAGGAATGGTCGAGATTCCTCGGGGGTACAAGGCTGACGAAGTTTAGAATCAACTCTGGTTGGGTTTTAAGGTGTGTGGCGTGGCCAATAACTGGAGGTCGCTTCTTTTTACATGTTTAGGAGGGGATGGCACAACAAGATTGGCTTTCTTTTTTGGGAATGTTAAAGGATTTTATTCAAAAATATGAGTTAAAAGTTCAACGTAGACCACAGTTTTTGGAATCTGATCACAACCATGTTGATATGTTTCCACAAGAATGTTATCCTTCAAAGGGCCAGGGTTGAGCTATGTGGACTTGTTGAAAAGGAACTTTGTTCTTAAGCCTCCAGTCCCCTCATTAGCTAAACAGAGCAAGCCTTCTCCTCCGAATTGCAAACAAATTTCATGGGTGTAGTAGAATCAAGATGTCTTTAAGGAAAATTCTATCTTTGGGTTATTTCAAGACTCTTCGTGTTTAATGATTGGATAGAGATAGCCAATGTTTTGGAAGCTCTTTTTAGTGTTAAAATCATCCTTAACCCTCTGTGTGCTGAAAAAGCTTTGATTAGAATCAATCAAGGGAAATTGGAAGATTTAATTGAAGCTCTAGGTAAATGGAAGTTATTTGAACAAGTTCATCTACTTTTTGAGAAATGAAATACTTTGAGACATAGTAGACGTTCAGTGATCAAGGGATTTGGTGGTTGGATCAAAATAAAAAACCTTCCACTAGAATATTGGAGTAGAAACACGTTCGAAGCAATTGGTGCTTACTTCGGCGGTTTGGAAAGCATAGCTAATGAAACTCTTAATCTCCTCAATGTCTTGGAAGCCAAAATTCAAGTAAAAAAAAACCTTTGTGGATTTATGCTGGCAACAATTGAGATTAAAGATGAGAGAAGAGATAACATATTTTTGAAGTTTGGTGATATTGAAATTACTGAAGCTCCTAAAGAAAATCATGACGCCTTGTTTCTCAAGGATTTCTCTAATCCTATTGATTTAATGAGATTGAAGTTGGTAGCACAAGATGAAGGAATTGGTTTTAACTTTCCAATCCAAGATTGGGATTTCCTACTGCAGAACAAGCCAAGCTTTTCCAGAAATCCTTTCATTAAAGACTCCTCACAAGTGTTGAAGCATCCTTTGAAGCTCTGTCATCAACCGGAAGGCAGACCGTACACCATGGCCGTTGGTATTCTCGAATTTCCATTGAATTTTCAGCCATCCAATGTGAACATATCTCATTCAATTTCTTTAGCAGAAGTCGAAGAGCCCAAATTAAGGAGGAAAGCGAAAGACCTTATCCTTTCATTCCCAGCCGTCGAGGGTAATTTTTTTTTCCTGATGGTTCACCTCTCAAAATTACCAGCCATGTGCCATTTATTGTCTCCAACTCTTTCGATTCCCCAACCACTAAAAACCCCTCTCGCTCCCCGTCAGTGGTACTGCCGATCCGTTACCCAATGAAAAGGACTCCAATAGTCGGCTGGCTTTTCTCTCTTCGGAAATCCCATTAGTTGGCAATACCCCCTTGTTGGTCAGCCCAAAAGACTTACCAAACTCATTTCATTCAGCTTCTATCTCTAACCCTTTGAAGCCAAAAAAAAATGCCCTAGATTTCTTAAGCCTTTCCCCAAAGCCTTCGTAAAAAAAAAAACCTCTTTTTTCAACTCTTTTTTACAATTTAGATTCCCAACCTTTATTAAAGGCATGTTTTCTTTTAATAAAATGAACTGAAAAGGGAAGATCACAGGAAAACCAACGGGACTGGACTAGTTAACCAAGGCAGCGTCAAGGTTTTGGAGGACCAAATGAAATCCATGGAAAATTCCAGCCATGTATCATATTAGTTATCATAAAAATAAAAGGATAATGAAGGTACTCTTTTGGTAATTGATGTGGGAGTTCAGAAAGTTGGGGATCTCTCAAACTAACTTAGGTTCTATAAGCTGTTAAGAAAATAATATGGAATGCTACACCAGTTGATTTAAATGATCTTAATTACAATAGAGTTCCTTCTTCCTTCTTTGAATCTTCTACAGTAACTTCTTTTAAAATTTGGCTTCTGAAGGTCTAGACTTTTTCCTCTCTAGCCCTTTGCTTTTGGTGCATGCTGTAAATTTCTTCAAGCTGTCAGTGTCAGCATCTCCCTCTTTTCATTGGAGAGAAAGGCTACTTTAATCTGAAATCTGTAAGACCTCTAGTTAGGGAAATTATAGGATTATTAGTAGAATATTAGTATGGTTATTAGACATGGCATATTTGTAATTAGATAGTAAGTTGTTAGGGCTTTTAGTTATAAATAGGTTTAGAGAGTAATCGTGTGCAACATTTTGTAGGATTTTCTATGGGTGTCAAGGAAACCCGCAGGAAAAATCCTAGGTAGTAGGTGGCCACCATGGATTGAAGCCATGAGCCTTTGGCCCTTTGGCCTTTTTTGTTTTTGTGGGAAATATTAGGAGAGACTTGCCTTCTTGAAAGGCTATGTTATATTGTAGTTTCTTTATTGATATTTCAATATAAATCTGTCTTTTAGTGTTCTTTGTTTGTCCTTTGTGTTCTTGAGTGTTCTTGTTAGGCGGTATCCTAACAAAACCCTCATGATTCTTTTGAACAGTAATTAAGGTAATTTTGATGATAAAATTTAGATGAAGCTGATGTCTAGGTACTATATTTAAATGCTTTACTTTGTATGTGGGCATTGTATCTTTGCAATGTTTCCTCTTTTTTATTTGTCAGTTACAATGGGTACACTTGTAGAACTTCCTACAGGTCTTTCTTACGGTTATTGTGGCATTTTGTTTCTATTTTCTTCTAATTTTTCCATCATTTTGATTAGGGTTGTAATTCTTCCAGGTCATTGGGTCTGTGAAAAAGCGCAACCAAAAGAGGCCTCATTCTGTATTGGGCCAGGAGAGCGGTGGTTTAGAGCTTCCATGCCCTCAATGTGGTAAATATTTTCTTTCTGTTTGAAAATCATCTTGCATCACCTTTTTGTTAATTCTCTTCATGAGAGACTTTTCTATAAAACTCCGTTGGTTGAATTATCGCCAACCCCACAAGCTCAAACTGATATGTTGAGGTATATTTAATCTTTTTTTTTTCTTTTTGTATATTCTTAACACTGTTTTCGTCTTCCGCGTTTATGAGCTTGGAAATTAATTTTCCTCTCAATAAGTGAGTTATTAATATCAATTCGAAATAAAACATTCCAAGGATTTAAAATCAAAATTTGCTTATGTTAAATTGCGAAATATTTTTGTTTTAGGTTGTTATATACATATTATTATTTTCCTAGAAAACACACTCACACACACACACAGATATATATATTTTGCTCCTGCTCTACATAATTTTTAATTCATTATGTTAGGCTGCAATTTTTTATTTTTTACATTTTATTTTTTATTTTTTAAAGGAAACAAACTTTTCATTGATATAATGAGAAGATGCTCAACTTACAATGATGCAAAACAAATCACAAAATAAAAACATGAACGAGAGAAAAAGCAAACTATGACAAATCATAAATATAGAGAAAGGTAAAACTAATTAAAGAAAATGAATGCACTCCAACTCAAAGAAAGGTAAAACTAATCAAAGAAAATGAATGCACTCCAACTCAAATAAATATCTTGTGCCAAAAAACTTGAAAATAGCTTGGAAAGAGAAACTAGGTGGATTCATTTAGTCTTGCAACTTCATAAGGATAAATCCACGAGAACGATTTTTCATGAAATGAAGGAGCTTCGACTCATACATTTATTCGTGGTAAATGAAAAGGATGAAGAAGTCGAGTTCATGGATGAAATGGATACGACGGACATGGAAGCACACTTTAGGCCATGGAAGTTGGGGAGCAATTGAGCTGGTGTTGAAACTGTAATGGGGTTCATTGCTTTGGGAACCATTAAGATGAAGGGGACGATTGATAAATGAGAGGTGATTGTGTTAATCGATTGTGGAGCCACCTACAACTTCATCGCACAAATGGTTGTAGACGAATTAAGCGTCCTTAATTGAAATTGCCGATTGTGGTGTCATCATGGGAACCGTAACAACCATTAAAGTGAACGGGTGTGTAAAGCAGTTGTATTGAACACCAACGAGCTCACTATTAGGGCAAACTTCCTATCTTTGGAATTATGGGGGCATTGATGTGGTCTTGGGAATGTAGTAACTCACTTTTGGAGCGACGAAGGTTGACAGGAAGGCACTCTCAATGACCGTTGGTAATGGGGAAGCTCAGTTCATGTTGAGGAGGCCTGAGGGTGATCCATCACTGACTAAGGCAAAGGTCACTTTGGAAAGAATCATGAAGGCTTGAGAAGATAGCGATTAGGGTACCTGGTTTGAGCATTGGAGGGAGTATTTTAGCATGAAAATTGAGTGTTAATGTTGTTTATTTCCTTTTGTGTTGATATTTTTACTATATTTATTGTGAAATATTTGCTGTACTTTTATTTTTCTTATTGTATATTTACTTCCTTATTTGTAATGGGTGTTTCTTCTATTTAAGAAACCCTTTCTATCAAAGAGGAATAAGAGAGAAAATACACTTTTTAGCATGGTATTAGAGCAATAATTGTTAGGTCTTACGACACGATCACTATATCTCTTTTCTTTTCTTTATCTCTCCTCTATAGAAAGGGGGGACGTAGGGAAGCTGCGGGCAAACAAACTACATAGCAGGCAATTTGCGTAAGAAAGAAAACAAGAAAAAAGTGGCTAAATGCCGACCAACCAACCAACGACGTCCTCTTTTTTCCGTCAGAGGCGATGAAAGCCCTATATATATAGATATAAAGAGAAAAAGATAGAAGGGCATGGTTTAAACTAGATTGTCANNNNNNNNNNNNNNNNNNNNNNNNAGCTGCAACCTATCTCATATGGGGGAGAAGTGTAGCCTGCTGTATCGAAAAGAAGTTGACTATGTTCTTTGGAGCTCGAACCCATAAATTGAATGAAATGAAATAATGGTGAGCCTCATGAAACCTAAAAAACCCTAATTTTCTGAAAACCTAGAAAAACCCTAGATCTGCCGTCGCTGCCACCGGTCAGTCGAACTCTGCTAGACATCGCATCTTCGCCGTCGGACATAGTCTAGCTGCACAATTCCAAACTCGTCACACTTTGATTAGCCACACATCTTCATCCAGCCACTCGTTTGGTCGAATTTTTAGGGTTTTGACGCCTTTGTGCAAGCTATCGCAGTTACCCGACTGTGTTTGCATCGCTGTTCGTCCGTTTCAGCTGCCAGTTTCATTTTTTTTTTTTTCCTTGAGTGGTTTAGCCACTATTTTTTATTTTATTTTATTTTATTTTTCCGAATCTACTAGTTTTTGGGTTTGGGTCTTTATCTCTTGAACAATATGTTAGACACTAAGGCACTTGCCGCTAAAGTCTTCAACAATCGTATCCATTCCAACACTCCCACTGTCCAAATAACCACCGTTCGACTTAACGGGGATAACTTTCTTCGTTGGTTCCAAAGTATTCGGATGTATATTCATGGACAAGGAAACATTGGTTATATCACTGGAGAAAAAACTGCTCCCAACCCAAATGACCCTTCATTTGCTGGGTGGGATGCTGAAAACTCCCTAAGCTTGGCTTGCCAATTCCATGGTGGAAGACATCAACTCTAACTACATGTGCTACTCTACTGCAAAGGAATTATGGGATAGTGTGACTTAG

mRNA sequence

ATGTCAAACCCTTTCGGTTTCCCTCCCAATGAATTCTCCCCTTCGGAAGTTATTGCTACCGGTTCCTTAATCATTGAAAAGGAATTTAATGCTCATTTAAATAACCTCTCTCTCGGAATTCCAAAGGTCAGTAGCCCCTCTTTTTCAGCAGCCCCTCCCCTTTTGGTCCTTTCAAAGAATAACCCTGATTCCTCTCCTCCAGCAATCGATTCTAACCCTTTGAAGCCAAAGAAGCGCCCTAACTTGCTCAAGCCGTACCCCAAGCACTTTGTTAGGAAAAAAACTTCATTTCTCAATTCTTGGTCCATGATGGTGAATTCGGATTTGCTTGAGAATTGTTGCGTTAAAGTGCAAATCCCAGGTTTGCTTCCAGAAAAACCGGGTATCACTTCCTCTGCTCAAGCCTCATTCTCCCATTCAGACTTCAAATTTCCAGGGCATTTGAGCTATAAATTTGAGATGTTGTCAGACTCAAGAATATGCAAAGGCTTAAAGATCTCTGTGGATGTTGAGCATGCAAAATGCAGTGTTTGCTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTTCACAACTTTTGCAATGGATGTTTCTCGGAGTGGTTAAAAAGATCCCAAGAGAAGCATACAAGTGTACTTTGTCCCCAGTGTAGAGCAGTTGTGCAGTTTGTTGGAAGAAACCACTACTTGCTAAACATTGCGGAGGATATATTGCGAGCTGATTCTTCCCTACAACGTTCGATTGAAGAAATTGCTATTTTGGATTCTTGTTCATTAATACAATCAAATCTGGCTTGGCTTGCCAATTCCATGGTGGAAGACATCAACTCTAACTACATGTGCTACTCTACTGCAAAGGAATTATGGGATAGTGTGACTTAG

Coding sequence (CDS)

ATGTCAAACCCTTTCGGTTTCCCTCCCAATGAATTCTCCCCTTCGGAAGTTATTGCTACCGGTTCCTTAATCATTGAAAAGGAATTTAATGCTCATTTAAATAACCTCTCTCTCGGAATTCCAAAGGTCAGTAGCCCCTCTTTTTCAGCAGCCCCTCCCCTTTTGGTCCTTTCAAAGAATAACCCTGATTCCTCTCCTCCAGCAATCGATTCTAACCCTTTGAAGCCAAAGAAGCGCCCTAACTTGCTCAAGCCGTACCCCAAGCACTTTGTTAGGAAAAAAACTTCATTTCTCAATTCTTGGTCCATGATGGTGAATTCGGATTTGCTTGAGAATTGTTGCGTTAAAGTGCAAATCCCAGGTTTGCTTCCAGAAAAACCGGGTATCACTTCCTCTGCTCAAGCCTCATTCTCCCATTCAGACTTCAAATTTCCAGGGCATTTGAGCTATAAATTTGAGATGTTGTCAGACTCAAGAATATGCAAAGGCTTAAAGATCTCTGTGGATGTTGAGCATGCAAAATGCAGTGTTTGCTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTTCACAACTTTTGCAATGGATGTTTCTCGGAGTGGTTAAAAAGATCCCAAGAGAAGCATACAAGTGTACTTTGTCCCCAGTGTAGAGCAGTTGTGCAGTTTGTTGGAAGAAACCACTACTTGCTAAACATTGCGGAGGATATATTGCGAGCTGATTCTTCCCTACAACGTTCGATTGAAGAAATTGCTATTTTGGATTCTTGTTCATTAATACAATCAAATCTGGCTTGGCTTGCCAATTCCATGGTGGAAGACATCAACTCTAACTACATGTGCTACTCTACTGCAAAGGAATTATGGGATAGTGTGACTTAG

Protein sequence

MSNPFGFPPNEFSPSEVIATGSLIIEKEFNAHLNNLSLGIPKVSSPSFSAAPPLLVLSKNNPDSSPPAIDSNPLKPKKRPNLLKPYPKHFVRKKTSFLNSWSMMVNSDLLENCCVKVQIPGLLPEKPGITSSAQASFSHSDFKFPGHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNLAWLANSMVEDINSNYMCYSTAKELWDSVT

Homology

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BLAST of Cla003014 vs. Swiss-Prot
Match: CHFR_MOUSE (E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-11
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 171 EHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNH 230
           E   C +C ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH
Sbjct: 299 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 358

Query: 231 YLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNL 267
            L N+ E  L       RS E++  +D+ + I  ++
Sbjct: 359 ILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQDM 388

[Close]

BLAST of Cla003014 vs. Swiss-Prot
Match: CHFR_PONAB (E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-11
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 171 EHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNH 230
           E   C +C ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH
Sbjct: 208 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 267

Query: 231 YLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNL 267
            L N+ E  L       RS E++  +D+ + I  ++
Sbjct: 268 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDM 297

[Close]

BLAST of Cla003014 vs. Swiss-Prot
Match: CHFR_HUMAN (E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-11
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 171 EHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNH 230
           E   C +C ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH
Sbjct: 300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 359

Query: 231 YLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNL 267
            L N+ E  L       RS E++  +D+ + I  ++
Sbjct: 360 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDM 389

[Close]

BLAST of Cla003014 vs. Swiss-Prot
Match: CHFR_XENLA (E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-10
Identity = 36/111 (32.43%), Postives = 51/111 (45.95%), Query Frame = 1


Query: 156 SDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVL 215
           SD      +K     E   C +C  + HD V+  PC H FC  C+S W++RS       L
Sbjct: 247 SDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------L 306

Query: 216 CPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNL 267
           CP CR  V+ + +NH L N+ E  L       RS E+   +D+ + I  ++
Sbjct: 307 CPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDM 351

[Close]

BLAST of Cla003014 vs. Swiss-Prot
Match: CHFR_XENTR (E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-10
Identity = 36/111 (32.43%), Postives = 51/111 (45.95%), Query Frame = 1


Query: 156 SDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVL 215
           SD      +K     E   C +C  + HD V+  PC H FC  C+S W++RS       L
Sbjct: 248 SDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------L 307

Query: 216 CPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSNL 267
           CP CR  V+ + +NH L N+ E  L       RS E+   +D+ + I  ++
Sbjct: 308 CPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDM 352

[Close]

BLAST of Cla003014 vs. TrEMBL
Match: A0A0A0KYR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508530 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.7e-60
Identity = 111/121 (91.74%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLK 205
           G+LS+KFEMLSDS++CKGLKISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCNGCFSEWLK
Sbjct: 104 GNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK 163

Query: 206 RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSN 265
           RSQEKHT+VLCPQCRAVVQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LDSCSLIQSN
Sbjct: 164 RSQEKHTNVLCPQCRAVVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLDSCSLIQSN 223

Query: 266 L 267
           L
Sbjct: 224 L 224

[Close]

BLAST of Cla003014 vs. TrEMBL
Match: A0A061DVR2_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_003224 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47
Identity = 91/122 (74.59%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKG-LKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWL 205
           G+LSYKF+++   + CK  LKI VDVEHAKCS+CLNIWHDVVT APC HNFCNGCFSEWL
Sbjct: 112 GYLSYKFKLMPGPKTCKRQLKICVDVEHAKCSICLNIWHDVVTIAPCLHNFCNGCFSEWL 171

Query: 206 KRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQS 265
           KRSQ+KH+SVLCPQCRAVVQF GRNH+L NI EDILRAD SL+RS EE+A++DS + I+S
Sbjct: 172 KRSQKKHSSVLCPQCRAVVQFAGRNHFLRNIEEDILRADPSLRRSNEEVALIDSYATIRS 231

Query: 266 NL 267
           NL
Sbjct: 232 NL 233

[Close]

BLAST of Cla003014 vs. TrEMBL
Match: M5WHB6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005407mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.1e-47
Identity = 90/122 (73.77%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRIC-KGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWL 205
           G+LSY+F +L     C K LKIS+DVEHAKC +CLNIWH+VVT +PCFHNFCNGCFSEWL
Sbjct: 104 GYLSYRFNVLPGPETCQKQLKISMDVEHAKCCICLNIWHEVVTVSPCFHNFCNGCFSEWL 163

Query: 206 KRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQS 265
           +RSQEK +SVLCPQCRA+VQFVGRNH+LLNIAE+IL+ADSSL+RS EE+AIL+S + I+S
Sbjct: 164 RRSQEKRSSVLCPQCRAIVQFVGRNHFLLNIAEEILKADSSLKRSDEEVAILNSYATIRS 223

Query: 266 NL 267
           NL
Sbjct: 224 NL 225

[Close]

BLAST of Cla003014 vs. TrEMBL
Match: A0A151S2D8_CAJCA (E3 ubiquitin-protein ligase CHFR OS=Cajanus cajan GN=KK1_029273 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 86/122 (70.49%), Postives = 107/122 (87.70%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRIC-KGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWL 205
           G +SYKF ++S   IC + LKI VDV+HAKCS+CLNIWHDVVT APC HNFCNGCFSEWL
Sbjct: 105 GFVSYKFHIMSSPNICQRQLKICVDVDHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWL 164

Query: 206 KRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQS 265
           +RS+E+H++VLCPQCRA+VQFVGRNH+L  IAED+LRADSSL RS +E+A+LD+ +L++S
Sbjct: 165 RRSKERHSAVLCPQCRALVQFVGRNHFLRTIAEDMLRADSSLGRSHDEVALLDTYALVRS 224

Query: 266 NL 267
           NL
Sbjct: 225 NL 226

[Close]

BLAST of Cla003014 vs. TrEMBL
Match: B9N5A6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s14500g PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.5e-45
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLK 205
           G+LSY+F+++      + LK+S+D EHAKCS+CLN+WHDVVT APC HNFCNGCFSEWL+
Sbjct: 106 GYLSYRFKLMPRESFTRWLKVSIDAEHAKCSICLNVWHDVVTVAPCLHNFCNGCFSEWLR 165

Query: 206 RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSN 265
           RSQE+H SVLCPQCRAVVQFVGRNH+L +I ED+L+ADSSL++S EEI +LDS + I+SN
Sbjct: 166 RSQERHASVLCPQCRAVVQFVGRNHFLHSIEEDVLQADSSLKQSDEEIILLDSYASIKSN 225

Query: 266 L 267
           L
Sbjct: 226 L 226

[Close]

BLAST of Cla003014 vs. NCBI nr
Match: gi|778695009|ref|XP_004146401.2| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 111/121 (91.74%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLK 205
           G+LS+KFEMLSDS++CKGLKISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCNGCFSEWLK
Sbjct: 104 GNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK 163

Query: 206 RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSN 265
           RSQEKHT+VLCPQCRAVVQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LDSCSLIQSN
Sbjct: 164 RSQEKHTNVLCPQCRAVVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLDSCSLIQSN 223

Query: 266 L 267
           L
Sbjct: 224 L 224

[Close]

BLAST of Cla003014 vs. NCBI nr
Match: gi|700199667|gb|KGN54825.1| (hypothetical protein Csa_4G508530 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 111/121 (91.74%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLK 205
           G+LS+KFEMLSDS++CKGLKISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCNGCFSEWLK
Sbjct: 104 GNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK 163

Query: 206 RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSN 265
           RSQEKHT+VLCPQCRAVVQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LDSCSLIQSN
Sbjct: 164 RSQEKHTNVLCPQCRAVVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLDSCSLIQSN 223

Query: 266 L 267
           L
Sbjct: 224 L 224

[Close]

BLAST of Cla003014 vs. NCBI nr
Match: gi|659082894|ref|XP_008442086.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 111/121 (91.74%), Postives = 118/121 (97.52%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLKISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCNGCFSEWLK 205
           GHLS+KFEM SDS++CKGLKISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCNGCFSEWLK
Sbjct: 104 GHLSFKFEMSSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK 163

Query: 206 RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILDSCSLIQSN 265
           RSQEKHTSVLCPQCRA VQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LDSCSLIQSN
Sbjct: 164 RSQEKHTSVLCPQCRAAVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLDSCSLIQSN 223

Query: 266 L 267
           L
Sbjct: 224 L 224

[Close]

BLAST of Cla003014 vs. NCBI nr
Match: gi|778695005|ref|XP_011653909.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 3.9e-58
Identity = 111/129 (86.05%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLK--------ISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCN 205
           G+LS+KFEMLSDS++CKGLK        ISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCN
Sbjct: 104 GNLSFKFEMLSDSKLCKGLKVIGNCHVLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCN 163

Query: 206 GCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILD 265
           GCFSEWLKRSQEKHT+VLCPQCRAVVQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LD
Sbjct: 164 GCFSEWLKRSQEKHTNVLCPQCRAVVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLD 223

Query: 266 SCSLIQSNL 267
           SCSLIQSNL
Sbjct: 224 SCSLIQSNL 232

[Close]

BLAST of Cla003014 vs. NCBI nr
Match: gi|659082892|ref|XP_008442085.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 3.9e-58
Identity = 111/129 (86.05%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 146 GHLSYKFEMLSDSRICKGLK--------ISVDVEHAKCSVCLNIWHDVVTAAPCFHNFCN 205
           GHLS+KFEM SDS++CKGLK        ISVDVEHAKCS+CLNIWHDVVTAAPCFHNFCN
Sbjct: 104 GHLSFKFEMSSDSKLCKGLKVIGNCHVLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCN 163

Query: 206 GCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEDILRADSSLQRSIEEIAILD 265
           GCFSEWLKRSQEKHTSVLCPQCRA VQFVGRNHYLLNIAEDIL+ADSSL+RS+EEIA LD
Sbjct: 164 GCFSEWLKRSQEKHTSVLCPQCRAAVQFVGRNHYLLNIAEDILQADSSLRRSVEEIATLD 223

Query: 266 SCSLIQSNL 267
           SCSLIQSNL
Sbjct: 224 SCSLIQSNL 232

The following BLAST results are available for this feature:

BLAST of Cla003014 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CHFR_MOUSE	2.7e-11	34.38	E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1	[more]
CHFR_PONAB	2.7e-11	34.38	E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1	[more]
CHFR_HUMAN	2.7e-11	34.38	E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2	[more]
CHFR_XENLA	2.3e-10	32.43	E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1	[more]
CHFR_XENTR	2.3e-10	32.43	E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1	[more]

BLAST of Cla003014 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYR0_CUCSA	1.7e-60	91.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508530 PE=4 SV=1	[more]
A0A061DVR2_THECC	2.8e-47	74.59	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_003224 PE=4 SV=1	[more]
M5WHB6_PRUPE	8.1e-47	73.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005407mg PE=4 SV=1	[more]
A0A151S2D8_CAJCA	1.2e-45	70.49	E3 ubiquitin-protein ligase CHFR OS=Cajanus cajan GN=KK1_029273 PE=4 SV=1	[more]
B9N5A6_POPTR	4.5e-45	68.60	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s14500g PE=4 SV=1	[more]

BLAST of Cla003014 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695009\|ref\|XP_004146401.2\|	2.4e-60	91.74	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]	[more]
gi\|700199667\|gb\|KGN54825.1\|	2.4e-60	91.74	hypothetical protein Csa_4G508530 [Cucumis sativus]	[more]
gi\|659082894\|ref\|XP_008442086.1\|	2.4e-60	91.74	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]	[more]
gi\|778695005\|ref\|XP_011653909.1\|	3.9e-58	86.05	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]	[more]
gi\|659082892\|ref\|XP_008442085.1\|	3.9e-58	86.05	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0032204	regulation of telomere maintenance
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0043247	telomere maintenance in response to DNA damage
biological_process	GO:0008150	biological_process
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU67090	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003014	Cla003014.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU67090	WMU67090	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 175..219 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 175..220 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 170..240 score: 3.3
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 175..219 score: 2.
None	No IPR available	PANTHER	PTHR16079	UBIQUITIN LIGASE PROTEIN CHFR	coord: 164..268 score: 8.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 174..226 score: 1.04

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003014	Cla97C04G069990	Watermelon (97103) v2	wmwmbB292
Cla003014	Csa4G508530	Cucumber (Chinese Long) v2	cuwmB333
Cla003014	CSPI04G20110	Wild cucumber (PI 183967)	cpiwmB348
Cla003014	CmaCh03G000160	Cucurbita maxima (Rimu)	cmawmB643
Cla003014	Lsi01G020640	Bottle gourd (USVL1VR-Ls)	lsiwmB155
Cla003014	Cp4.1LG10g12220	Cucurbita pepo (Zucchini)	cpewmB089
Cla003014	CsGy4G018760	Cucumber (Gy14) v2	cgybwmB316
Cla003014	MELO3C033099.2	Melon (DHL92) v3.6.1	medwmB565
Cla003014	Carg26096	Silver-seed gourd	carwmB0513
Cla003014	CsaV3_4G030320	Cucumber (Chinese Long) v3	cucwmB357

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003014	Cucurbita maxima (Rimu)	cmawmB833
Cla003014	Cucurbita moschata (Rifu)	cmowmB629
Cla003014	Cucurbita moschata (Rifu)	cmowmB824
Cla003014	Melon (DHL92) v3.5.1	mewmB576
Cla003014	Watermelon (Charleston Gray)	wcgwmB256
Cla003014	Wax gourd	wgowmB455