CsGy4G018760 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G018760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase CHFR isoform X1
Location	Chr4 : 24615247 .. 24619391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGCAACGGTTAGGCATGATTAAGAAAATCATTCTAGTTGCAATTGATAATTCTAAACTTTTGACACTGGAGAGAAATTCATTAAATTATTTCTTCATTTCGCATTGTTCTTTAATGTTTTCTTTCTGTTCCTTGACTTCTTTCTTTTCAATCAATCAATTTGTTTCTTGTTTACAAAAAAGCATATTTGAATGAAGAAAGTCCTGGTCATCCTTTGTTATTACCACTATGAATTGTTTTTATTAAATGTTACTTATGGGATTTGAGATTGTGCAGTGATGTTTGAAATTATATTTCTTGTCTTTATAGCCTCCCTTTCTTTGTCTCTCTCTCTTCTTTTTTTCTTATAGTATATTTTATCTTGTGTTTTGGGTGTTATAGTTCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATCAAGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGGTTAGTATTTCTTCAAACTCTTTCTTGTTTGTGAAGGAGAGAGTTTAACTGTGGATGATTTAGAATTATTTGGTTTCGCATTGTTGATATCATAGTATGGAAGCCTTCTCTAGTTTGTTATCTGTAAGTATATTATTTACCATATTAGTAATCATTAAATTCTAGACTTAAAGAGCACCAGAAAGATCCAGCTTCTAATCCACATGGTAAGCAACGCATCAGAAAATCCTACCGAATCCACAGAGAACCAGCCAATGACCCTAGAGCTCTGAAATGTTCTATAAAAGCATTATTAAATCTTTTCATTTTAGATTCCTTCAGTGGTGGCAGTAACAAAATTGTGGTGACGGAAATACTTCCTAAATTGCTTTGACCAGAATAATACCACAATCTTTGACAACGGACACCAAGTCCTTTGGAAAATCCAAGGATTTTAGTGGGGAGGACCAAGGGGCATTGTCTAGCGGGACACAATCATCTTCACAAAGAATGTCTAAATCCATCCCTTCAATCTCTGCAACAGCCTTATGATCAGAAGGACACCTCAAGCCCGTTGATTCTTCACTACTAACACTGGAGGGTGAGTCTACCTCCAACTCTGCTTGCTTCTTGGTGGAAACAACAGAATGACAAAGGGGAACCTTGTAATAACGTTACCTTTGTGTTAGGGTCTGTGAAACTCGAATAATTGAAAATTTTTGGAGCAGGAATATCAGTTACTAACCTGCTGAGAGAATCAGAGGCATGGACTTTGGAAGTACACACCTTCAAGAGGTTCGGGTTATCTTCGAAAGGGGAGGGCTTGAGTTTAAGTTTCTGGTGGGGATCCAAAAGAAGGGCTTTGAGAGAACAAGCCCCAATTGATTCAGACTTTAGGAGAGCAGTTCATGTGTTGTTGAAAGACATCTTCTTTTGAATGTCAGACAAAATTTCGGGGAGTTGACTTGTTTTTTCCTTTACTCTGACTCAATCTGTTTAAATTGCTAGTTTCTGGAGAACTTTGGAATGCAGCATCTGACTGAGGTTCTTTGAGAGGGAGATCGTTGGGCCTCTGTTTTTTAAAAGGGGAATCTAACTTGGTGTAGCCCACAAAACCAACTAGACAGCCGTTCTTAATAGGTTTTACAGAATCCAATAAAGATGACTTTTTGAATTCCAGTGCAATTAAAGCAGTTTCGGCCCAACTTCTTGCTTCTTTTGTCTTCTCCGGGGCCGATGAGGGTTCTTGAAGGTGTTCCAGAATTGCAAATGGATTTCTTGCTATGTGAAGATGTGCAAAAGTTGATTTTGGGAGATTTAAAACTGAGGGGAAAAAAGGGAGGTCTGAACCTTCATTTTGCAAGGCCTCCCTAATTCTTAAAAAGTCAATAGAATTTCTAAAATCATTAACCATAATAGTACCAACAGTAGGAACGGGAGGATTCAAACATTTGAAATCACCGAAGTTTAAAAAAATGTTTCCCCTTTTAAGATCAGTAATCTCAATCGTGGAAGGTACAGAACCGCAAAGATTTTGCTTAACTTGAATCCTAATTTGACTGTAATTGGTAAGATTTAAAGTGTCCATGGCAATGCTTTCAAGTTCTCCAAAATGATCCACGATAACCTTGAAGTTTTTCCTGCTCCAGTAATCCAAAGGGAGGTTCTTTATTTTGAGCCATCCTCCATAGTCTTTCATGGTGAGCGGCCGATTGTTTGTGTTTATCCCATCTTTCAAAATTTAGGTGAAAAGAGCCCATTGCCTGCCATTTCCCTTCATTATTGATGAGATCCTTTATCGAGCCTTGGTCAAAACTAATGAGAGCATTCTCATCAATTAAAGGATTAATAACTATCTTTGCTTGGAAATAGTTCTTTAACATCTTTCGAATTCTCTTCCAATCATCGAAGGCAAAGAGCTTAGTAGTGATCCTAAGGTTTTCAAAATTGGTTGGGATAACTTCAAAATTCCTAATTACCCAATTCTTTTGCTTTCCGCTATTCAAACCTGAGAAAGGACAAGGGGAAACCTTTGCTACTTTTGTATCGGCCACCACTACAGGACTATTGCAATCTCTGGAAGCTTTCTTTATGACAGACGCATTGCTCTTTTTCTGTTTGACTTTATCTGTATAACTCAGGTTGCTTTCCATATTATTGGGAATGTGCTTCAAGTAATTTCTAGAAAACCAATTGACATATTCCTCCCTAGAACAAAAATTGTCCAGCATATTTAGAAAGGATCTCCATCCCTATTTGTTTTCCCTCGAGCACACCCTTATATTAGAAAGCCCTCCTAATGAAGGCCAAAAGTCACAGCTTAATACCAATCCAGTCTTTGTTTTAAATTTCAAAGCTTTCAATCTACCTCTATCTACTTCACCTAGCTTTTGAAAGAACTTGTCCCCTGGCCCTCTTAATAATTTTGAGACCGCCGTCAACAACCATTCTAGATGAAATCTGGAGACCGACAAGGTTCTACAAGCTTCCACATCTTCAACGTGAATCTGATTTCCCACTTTCCAAGTACAGTAATGAGACTCGAGGACTTTGCAGTTGACTACTTCCATATTTGGATGAAAATGCCGGCAGCCGAAAGGAAAGAGGATAGAGGGAGGAGAGAGGAGGGAGGAGGGAGAGAACTTACCTTTCTTCCCTTAATGACATCGTATTGTTTTGGACCATCTATACTTCCTCAATGTCATTTAATTTCTCTATTTTCGAATATGATGAGGACGCTAAGGGGGTGTCAGCCTAGTTGAGATGTCCGGGTGCGTCTATTGATCTCTAGTTCTTTAATTGCTCATTGTATAACCCTTTTGTACTTTGAGCTTTCCTCATTTTTTTATAATAAATGAGATTCGTTTCCTCATTGTACTGTTTTGGACCATCTATACTTCCTCAATGTCATTTAATTTCTCTATTTTTCGGATATGATGAGGACGCGAAGGGGGTGTCAGCCTAGTTGAGATGTCCTGGTGCGTCTATTAATCGCTAGTTCTTTATTGCTCATTCTATAACCCTTTTGTATGAGCTTTCCTCATTTTTTATAATAAATGAGATTCGTTTCCTTCTTTTAAACAAATATTAGGTTGTTAATTAATAGATGAGCTAAGTAAATAAATTAATTTTTCTTAGTTTCTTTGACTTCTAACAACACTTGCAAAATCCTTCTGTATTTTTGTCAACTCTTTTTTATAAGAACTAATCAATTCTTGTTTAATTTAAGCCAATTGGAGAGTATCTTATGCTTACCTTTGGTTTTGGCTTTGAATATTTTCAGGAATCTTTTCTTATTCAATTTTTCTTATAGCGAAATCCGAAAGCTAACTGCACAGATATTTTTTATGGTTTGATTGAAAATGTAGAACTGCTTGTCTTATGGAGCTTTTCGATTGTAATTTCCAGGGAATTTGAGCTTTAAATTTGAAATGTTGTCAGATTCAAAATTATGCAAAGGCTTAAAGGTGATTGGTAATTGTCATGTTTTGGTAATTTGGTTATCAGAATGTGATATTAGGTTCTAACCATCCTTTTAGAAATACTCAATTCTAGGGGTTGTTTGAATTTGTCCAGATTTCTGTGGATGTTGAGCACGCAAAATGCAGTATTTGTTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTCCACAACTTTTGGTGGGCCTGTTAG

mRNA sequence

ATGAACCAGCAACGTTCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATCAAGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGGTTATATGGAAGCCTTCTCTAGTTTGTTATCTTTTCTGGAGAACTTTGGAATGCAGCATCTGACTGAGGGGTTGTTTGAATTTGTCCAGATTTCTGTGGATGTTGAGCACGCAAAATGCAGTATTTGTTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTCCACAACTTTTGGTGGGCCTGTTAG

Coding sequence (CDS)

ATGAACCAGCAACGTTCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATCAAGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGGTTATATGGAAGCCTTCTCTAGTTTGTTATCTTTTCTGGAGAACTTTGGAATGCAGCATCTGACTGAGGGGTTGTTTGAATTTGTCCAGATTTCTGTGGATGTTGAGCACGCAAAATGCAGTATTTGTTTAAACATATGGCATGATGTTGTCACAGCCGCTCCTTGCTTCCACAACTTTTGGTGGGCCTGTTAG

Protein sequence

MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTEGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC

Homology

[Close]

BLAST of CsGy4G018760 vs. NCBI nr
Match: XP_008442085.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGY------MEAFSSLLSFLENFG 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+      M + S L   L+  G
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGHLSFKFEMSSDSKLCKGLKVIG 126

Query: 61  MQHLTEGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
             H        V ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 NCH--------VLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 165

[Close]

BLAST of CsGy4G018760 vs. NCBI nr
Match: XP_016899584.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGY------MEAFSSLLSFLENFG 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+      M + S L   L+  G
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGHLSFKFEMSSDSKLCKGLKVIG 126

Query: 61  MQHLTEGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
             H        V ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 NCH--------VLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 165

[Close]

BLAST of CsGy4G018760 vs. NCBI nr
Match: KGN54825.1 (hypothetical protein Csa_4G508530 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 69/101 (68.32%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTE 60
           +  + SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDG +     +LS         L +
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLS------DSKLCK 126

Query: 61  GLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
           GL    +ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 GL----KISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 157

[Close]

BLAST of CsGy4G018760 vs. NCBI nr
Match: XP_004146401.2 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 69/101 (68.32%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTE 60
           +  + SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDG +     +LS         L +
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLS------DSKLCK 126

Query: 61  GLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
           GL    +ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 GL----KISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 157

[Close]

BLAST of CsGy4G018760 vs. NCBI nr
Match: XP_008442086.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 8.9e-27
Identity = 70/102 (68.63%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSF-LENFGMQHLT 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+       LSF  E      L 
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGH-------LSFKFEMSSDSKLC 126

Query: 61  EGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
           +GL    +ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 KGL----KISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 157

[Close]

BLAST of CsGy4G018760 vs. TAIR10
Match: AT1G47570.1 (RING/U-box superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-20
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTE 60
           ++ + S+AI+VD+ +V KD    I  GSEIV GP   GY++           F +    E
Sbjct: 71  IHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQ---------YRFTIMPAPE 130

Query: 61  GLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
              + +QIS+D EHAKCSICLNIWHDVVTAAPC HNF   C
Sbjct: 131 SRTQLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGC 162

[Close]

BLAST of CsGy4G018760 vs. TrEMBL
Match: tr|A0A1S4DUC8|A0A1S4DUC8_CUCME (E3 ubiquitin-protein ligase CHFR isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-27
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGY------MEAFSSLLSFLENFG 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+      M + S L   L+  G
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGHLSFKFEMSSDSKLCKGLKVIG 126

Query: 61  MQHLTEGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
             H        V ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 NCH--------VLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 165

[Close]

BLAST of CsGy4G018760 vs. TrEMBL
Match: tr|A0A1S3B4G1|A0A1S3B4G1_CUCME (E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-27
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGY------MEAFSSLLSFLENFG 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+      M + S L   L+  G
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGHLSFKFEMSSDSKLCKGLKVIG 126

Query: 61  MQHLTEGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
             H        V ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 NCH--------VLISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 165

[Close]

BLAST of CsGy4G018760 vs. TrEMBL
Match: tr|A0A0A0KYR0|A0A0A0KYR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508530 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.5e-27
Identity = 69/101 (68.32%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTE 60
           +  + SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDG +     +LS         L +
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLS------DSKLCK 126

Query: 61  GLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
           GL    +ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 GL----KISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 157

[Close]

BLAST of CsGy4G018760 vs. TrEMBL
Match: tr|A0A1S3B4V7|A0A1S3B4V7_CUCME (E3 ubiquitin-protein ligase CHFR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.9e-27
Identity = 70/102 (68.63%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSF-LENFGMQHLT 60
           +  + SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+       LSF  E      L 
Sbjct: 67  LQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDGH-------LSFKFEMSSDSKLC 126

Query: 61  EGLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
           +GL    +ISVDVEHAKCSICLNIWHDVVTAAPCFHNF   C
Sbjct: 127 KGL----KISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGC 157

[Close]

BLAST of CsGy4G018760 vs. TrEMBL
Match: tr|A0A1Q3C163|A0A1Q3C163_CEPFO (Zf-C3HC4_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_17483 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 1   MNQQRSNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGYMEAFSSLLSFLENFGMQHLTE 60
           M  + SNA++VDE +VQ D+   I+CGSEI+ GP  +GYM         +  F +    E
Sbjct: 67  MQNKSSNALLVDEAIVQNDDVIDIQCGSEIILGPAGEGYM---------IYRFKVMPSRE 126

Query: 61  GLFEFVQISVDVEHAKCSICLNIWHDVVTAAPCFHNFWWAC 102
              + +QI +DVEHA+CSICLNIWHD+VT APCFHNF   C
Sbjct: 127 SCKQQLQIGIDVEHARCSICLNIWHDIVTVAPCFHNFCNGC 158

The following BLAST results are available for this feature:

BLAST of CsGy4G018760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442085.1	4.0e-27	65.42	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]	[more]
XP_016899584.1	4.0e-27	65.42	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo]	[more]
KGN54825.1	5.2e-27	68.32	hypothetical protein Csa_4G508530 [Cucumis sativus]	[more]
XP_004146401.2	5.2e-27	68.32	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]	[more]
XP_008442086.1	8.9e-27	68.63	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]	[more]

BLAST of CsGy4G018760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47570.1	1.2e-20	48.51	RING/U-box superfamily protein	[more]

BLAST of CsGy4G018760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G018760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUC8\|A0A1S4DUC8_CUCME	2.6e-27	65.42	E3 ubiquitin-protein ligase CHFR isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A1S3B4G1\|A0A1S3B4G1_CUCME	2.6e-27	65.42	E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A0A0KYR0\|A0A0A0KYR0_CUCSA	3.5e-27	68.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508530 PE=4 SV=1	[more]
tr\|A0A1S3B4V7\|A0A1S3B4V7_CUCME	5.9e-27	68.63	E3 ubiquitin-protein ligase CHFR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A1Q3C163\|A0A1Q3C163_CEPFO	2.4e-20	49.50	Zf-C3HC4_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018760.1	CsGy4G018760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 67..101 e-value: 5.3E-6 score: 27.8
None	No IPR available	PANTHER	PTHR16079	UBIQUITIN LIGASE PROTEIN CHFR	coord: 6..101
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 73..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G018760	Cla003014	Watermelon (97103) v1	cgybwmB316
CsGy4G018760	ClCG04G002460	Watermelon (Charleston Gray)	cgybwcgB283
CsGy4G018760	CSPI04G20110	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G018760	Lsi01G020640	Bottle gourd (USVL1VR-Ls)	cgyblsiB238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G018760	Cucurbita maxima (Rimu)	cgybcmaB530
CsGy4G018760	Cucurbita maxima (Rimu)	cgybcmaB564
CsGy4G018760	Cucurbita maxima (Rimu)	cgybcmaB570
CsGy4G018760	Cucurbita moschata (Rifu)	cgybcmoB504
CsGy4G018760	Cucurbita moschata (Rifu)	cgybcmoB539
CsGy4G018760	Cucurbita moschata (Rifu)	cgybcmoB544
CsGy4G018760	Cucurbita pepo (Zucchini)	cgybcpeB465
CsGy4G018760	Cucurbita pepo (Zucchini)	cgybcpeB525
CsGy4G018760	Cucumber (Chinese Long) v2	cgybcuB173
CsGy4G018760	Melon (DHL92) v3.5.1	cgybmeB285
CsGy4G018760	Melon (DHL92) v3.6.1	cgybmedB285
CsGy4G018760	Silver-seed gourd	carcgybB0482
CsGy4G018760	Silver-seed gourd	carcgybB0521
CsGy4G018760	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G018760	Watermelon (97103) v2	cgybwmbB283
CsGy4G018760	Watermelon (97103) v2	cgybwmbB288
CsGy4G018760	Wax gourd	cgybwgoB375