Cla002702 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002702
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 212993 .. 214693 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGTAAGTTCATTTGCTATCACAGCTTATTTCTCGTTATTCCAATAATGTTTGTATGTCATTGACTCATTGATGCCTTCGTCTACGTGCTAACTTCGCTTATGGAAATCCGAGTGTTCTTCTTGTGGATGTTGTATAACTACAATGTTTCATGTTCTTTTTAATCCTTTTTTTTTTTCCTTGGAAAGGATTAATATCTTCTACTTGACTTCAATAACAATGGACGATGATATGCTTTAGTATTCTAAGCTGTGTTGGCTTTTCTTCCTCAGATATTGATTTATGAGAATCTTTTACTATCATTTGCCGAGCATTTTTGACACTGTATTATGGTGTATGTGGCAGGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGTATGTTGCATTTCTTCTATTCTTATTACCTCTAGTTATGCCTTTTGTTTAGAAAGTCGCTAATTTCAACATAGATAAGTGGATAAGATACCAGTTGTCATCTAAAAGGTCAATGACTCAATCCTTTACCATGCAATTGTTGAACTAAAACAGAAATGTAAATTCTCCCCCTAGCATTATTATCACATAGCTACAAGGTTGAACTGATTACCACTCTAAAGGTTGATGATTCAATCTACCACTCTAACATTGTTGAACTAGAGAAAAAAATTGTCTAGAAAGTCGGTGTAAATTCTCTCTACCATCATTATCATACAGGCACCTCATTAGCTATCTACCATATTAGTTGCTGAACTAATTTTGGATTTATGGCACTATATATGTAGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGTTGGTACGATCTACAAAATCTCATATTAATTATTGCCTTGTCCTTGTTATTTTGGTATTCATAAAGCCTTCTATTTATATGAACTTTCATGATAGCACTTATGCATTAGATAGATATGTAGTAAATCAGTTAGATCATGTATTTTCTTAATGTTTTTGCTCAGTACTCCCAAATGGATGTTCTTTCCATTATGTGTTTTCAAATTACTAACACTAGATAGGTGTTGAGGATCACATTGTGATGGAAGATCTCACAGGTTTTATAAGATATATTGATAACTCCTCTCATAGCCAATCGATTTTGAGATGAAACCTAGAAGAACTTACTTTCTCACCGCCTACATTTTCTCTCTTTTTCTTCCTTCCTTGAGTCATCAGATTCATTCTATGTAGATTTACTAATTCAAATGCATGCTATCACTTGAACAAAGACTGCTTATAGGGGATTCTTATGTTCTACATGACTTGCATATTATGCTTCAAGTTAGTGTGTTTTTCCCAATTTGTATTGCCAACTCATTATATTTCTCTCATCTTCTTTTCCCCATCTTCTATCTCCTTCTAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

mRNA sequence

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

Coding sequence (CDS)

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

Protein sequence

MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGKRPREKVDSRQKNDKL

Homology

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A0A0KW48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 300 RPQEKVDSRYKKNDKL 314

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A0A0LBP9_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.2e-51
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDL+TLRA
Sbjct: 59  MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 118

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LR SDV DLSQS   N CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 119 IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 178

Query: 121 RPREKVD-SRQKNDK 135
           R REKVD S +KN K
Sbjct: 179 RSREKVDLSYKKNGK 192

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A061GD22_THECC (Gamma-tubulin complex component (Fragment) OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 73/135 (54.07%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 2   EEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAI 61
           E+ +E+L NN IED+SWLCSLSESELD+LIS+KML ++RA+VIGH  LAK FDLK LRA+
Sbjct: 30  EKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARVIGHVQLAKNFDLKMLRAL 89

Query: 62  GFVLMEHLKGELR-ASDVPDLSQSAA-LNGCNLLDSSLEEILSIDEIMASICSDRRKKPG 121
           GF+LME+LK +++ +S V  +++SAA ++  NLL S L++++SI+E+   I    RK+  
Sbjct: 90  GFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDDMMSIEELKEGIAIKTRKEFC 149

Query: 122 KRPREKVDSRQKNDK 135
           KRPREK D+  ++ K
Sbjct: 150 KRPREK-DAANRSSK 163

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A061GK54_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 73/135 (54.07%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 2   EEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAI 61
           E+ +E+L NN IED+SWLCSLSESELD+LIS+KML ++RA+VIGH  LAK FDLK LRA+
Sbjct: 3   EKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARVIGHVQLAKNFDLKMLRAL 62

Query: 62  GFVLMEHLKGELR-ASDVPDLSQSAA-LNGCNLLDSSLEEILSIDEIMASICSDRRKKPG 121
           GF+LME+LK +++ +S V  +++SAA ++  NLL S L++++SI+E+   I    RK+  
Sbjct: 63  GFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDDMMSIEELKEGIAIKTRKEFC 122

Query: 122 KRPREKVDSRQKNDK 135
           KRPREK D+  ++ K
Sbjct: 123 KRPREK-DAANRSSK 136

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: D7TVM0_VITVI (Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.6e-29
Identity = 67/130 (51.54%), Postives = 100/130 (76.92%), Query Frame = 1


Query: 7   ILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAIGFVLM 66
           +L +NR+ED++WLCSLS+SELDMLIS+KM+VL+RAKVIGH DLA+KFDLK LRA+GF+LM
Sbjct: 6   VLGSNRLEDVNWLCSLSDSELDMLISLKMMVLRRAKVIGHEDLAEKFDLKMLRALGFILM 65

Query: 67  EHLKGELR-ASDVPDLS-QSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGKRPRE 126
           E+L+G+++  S +P L+     LN CNLL  SL++ +S +E+ A IC++ ++   +R  +
Sbjct: 66  EYLRGQVKDLSAIPGLAGLDKFLNECNLLKCSLKDTISTEELKACICTNSKRGTAERSSK 125

Query: 127 KVDSRQKNDK 135
           ++   +K  K
Sbjct: 126 ELAPNRKKQK 135

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|778692248|ref|XP_011653427.1| (PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 121 RPQEKVDSRYKKNDKL 135

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|700198692|gb|KGN53850.1| (hypothetical protein Csa_4G166940 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 300 RPQEKVDSRYKKNDKL 314

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|659100239|ref|XP_008450997.1| (PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+NNR+EDISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDLKTLRA
Sbjct: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQSA LN CNLLDS++E+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPRE 125
           RPR+
Sbjct: 121 RPRK 124

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|659120858|ref|XP_008460383.1| (PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.7e-51
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+NNRIEDISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDLKTLR 
Sbjct: 1   MEEANEILKNNRIEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRT 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ L IDEIM SIC DRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVTDLSQS-ALNACNLLDSNLEKSLPIDEIMTSICLDRRKKPGK 120

Query: 121 RPREKVD 128
           RPREKVD
Sbjct: 121 RPREKVD 126

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|778682197|ref|XP_011651668.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-50
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDL+TLRA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LR SDV DLSQS   N CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPREKVD-SRQKNDK 135
           R REKVD S +KN K
Sbjct: 121 RSREKVDLSYKKNGK 134

The following BLAST results are available for this feature:

BLAST of Cla002702 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW48_CUCSA	1.2e-53	84.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1	[more]
A0A0A0LBP9_CUCSA	7.2e-51	82.22	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1	[more]
A0A061GD22_THECC	1.6e-29	54.07	Gamma-tubulin complex component (Fragment) OS=Theobroma cacao GN=TCM_029316 PE=3...	[more]
A0A061GK54_THECC	1.6e-29	54.07	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1	[more]
D7TVM0_VITVI	4.6e-29	51.54	Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1	[more]

BLAST of Cla002702 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692248\|ref\|XP_011653427.1\|	1.7e-53	84.56	PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus]	[more]
gi\|700198692\|gb\|KGN53850.1\|	1.7e-53	84.56	hypothetical protein Csa_4G166940 [Cucumis sativus]	[more]
gi\|659100239\|ref\|XP_008450997.1\|	6.5e-53	87.10	PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]	[more]
gi\|659120858\|ref\|XP_008460383.1\|	2.7e-51	85.83	PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo]	[more]
gi\|778682197\|ref\|XP_011651668.1\|	1.0e-50	82.22	PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0008150	biological_process
biological_process	GO:0090307	mitotic spindle assembly
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0051415	interphase microtubule nucleation by interphase microtubule organizing center
biological_process	GO:0031122	cytoplasmic microtubule organization
biological_process	GO:0051298	centrosome duplication
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0006412	translation
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0005813	centrosome
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005816	spindle pole body
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0051011	microtubule minus-end binding
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU16117	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU32079	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002702	Cla002702.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32079	WMU32079	transcribed_cluster
WMU16117	WMU16117	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 26..116 score: 2.5
None	No IPR available	PANTHER	PTHR19302:SF39	SUBFAMILY NOT NAMED	coord: 26..116 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002702	Cla97C07G130420	Watermelon (97103) v2	wmwmbB176
Cla002702	Csa3G633280	Cucumber (Chinese Long) v2	cuwmB227
Cla002702	MELO3C022720	Melon (DHL92) v3.5.1	mewmB364
Cla002702	ClCG07G002120	Watermelon (Charleston Gray)	wcgwmB374
Cla002702	CSPI03G27700	Wild cucumber (PI 183967)	cpiwmB225
Cla002702	Cucsa.150080	Cucumber (Gy14) v1	cgywmB266
Cla002702	CmaCh02G016690	Cucurbita maxima (Rimu)	cmawmB559
Cla002702	CmoCh02G017130	Cucurbita moschata (Rifu)	cmowmB552
Cla002702	Lsi05G011350	Bottle gourd (USVL1VR-Ls)	lsiwmB357
Cla002702	Cp4.1LG05g00640	Cucurbita pepo (Zucchini)	cpewmB701
Cla002702	CsGy3G025710	Cucumber (Gy14) v2	cgybwmB212
Cla002702	MELO3C022720.2	Melon (DHL92) v3.6.1	medwmB362
Cla002702	Carg08891	Silver-seed gourd	carwmB0779
Cla002702	CsaV3_3G030060	Cucumber (Chinese Long) v3	cucwmB234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002702	Silver-seed gourd	carwmB0285
Cla002702	Wax gourd	wgowmB266
Cla002702	Cucumber (Gy14) v1	cgywmB084
Cla002702	Cucurbita maxima (Rimu)	cmawmB492
Cla002702	Cucurbita moschata (Rifu)	cmowmB486
Cla002702	Watermelon (Charleston Gray)	wcgwmB026
Cla002702	Cucumber (Chinese Long) v2	cuwmB587
Cla002702	Cucurbita pepo (Zucchini)	cpewmB258
Cla002702	Bottle gourd (USVL1VR-Ls)	lsiwmB194
Cla002702	Cucumber (Gy14) v2	cgybwmB549