CSPI03G27700 (gene) Wild cucumber (PI 183967)

NameCSPI03G27700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionGamma-tubulin complex component
LocationChr3 : 25222523 .. 25224791 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTCTTCTTATTTTGATGTATGAGAAATTTTTACTATCATTTTTATTGACACAGTATTATGATGTATTTGGCAGGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGTATGTTGCATTTATTCCAATTTTATTACCTCTAGTTATGCCTTTTGTCTATTAAGTCATTATCTTAAGCATAGCTAGGTGGACAAGACACACATTGTCATCTCAAAAGTCAACAATTCAATTCTTCACCCACCCTATTGAGCTAAAACAAAAATATGAATCTCGCTCACTATTTTGGTGTTTTCTACTATATTAGTTGTTGAACCAGTTACCATTCAATCCAAATGTCAATATATTTGATCTCCCACTCTTACACTGTTGAACTAGGGAAAATAAGTGTCTAGAAAGCAGGTGTAAATTCTCTCTTGGCATCATTATCATACATCCACTCTGTTAGCTATCTTTCATATTAGTTACTGAACTAATTTTGTATTTCTCACACTATAAATCTAGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTTGGTACCATTTTCAAGTTGTTGTGTTTGTATTGTTCAAGACCACATTTTGGAAAGAATAGTGAAATGTCATGTTAATTATTGCTTTGTTATTTTAATATTCCATATTAACAGGGAAAAAAAACTTTCGACGACTACATTAACCTTTTGGTATTCGTAAAGCCTTCTATTCATATGAATTTTCACGATAGCGCTTATGCATTGGATAGATAAGTAGTAGATTAGTTTGATCATTTCCGTTCCTAGTATTTTTGCTCAGTACTCTGGAGTGGTGGTTGTTTCCATTGTGTTTTCTTATAATGGCACTAGATAGGTGTTTAGAATCACGTTGGAAAGATGTGAGGCCTCATGATCATAAGATACATGAGTTACTTCTCTCGTAGTCAATTGGTATAGAGATGAAGGTATTCATGTTTATCTTATATGATATCAAATATATGAAGTCCCCTCAAGTATTTGTTCCAAAAAAGAAAAAAGAAAGACAAAATTTGACCCAAGAAAGGTGAACCCAAAGAGATCTTGAGAGAGGAGGTATACAGAGGATCTTGCATTAGAAAAACTTACCATGATACTCTACTCGTTATCAACTATTTAGATGGATACCATTTTTATCTATTAATTGGAAGTTTGGAGAAGTACTTTCTTTCTCACCCCCTACATTCTCTCGTTTTCTGCCTTCCTCGAGTGGTCAGATTCGTTCGTTCTATTTACATTTGTAGATTTACTAATTCAAATGAATGGTATCATTGGAGATCGTCTCAATAAATAATGGTTAAGAGGTCAAAGTTTCAATTGATGGTGTCTACCTACCTATAAATTAGTTTCCTACGAGTTTTCTTGACATTCAAATGTTGTAGGCTAGACAAGTTGTTTGGTGAGATTAGTCGAGCTGCGCGTAGGCTAGTCTAGACACTCACAGATATAAAAAAAACGCATAGTATCATTTGAATTGAACCTTATTATAATTTCGTGTAGGGAACTGTTCTTAATGACTTGCACATAATGTTGTGCTTCTGAATTTGCATTCCCAACTTTTGAACTTATATTTCTCGTCTTCTTTTCCCTCTCTCCTTTGTCTTTCTAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGAATACTAGAAGTTCATCTGATTCATGGAAGTTGTCTTTGCCAACCTGTCGGCATCATGCACAGCTTCCCACATTGCAAAACTTGGCAGGAATCATTCTAACAGCCATGGTGGTCGCCAACATTTTTGTTAGTTATAAATATAATAGTGCAGGAAGCGAAAGGAATATGTATTAATGGTTTGAGCTATATCTTATTGAGCCATATCAGATGACAGGGAAAATTTTGTAGTTCCACTCCATTCATTTATTGTCACAAAACGAAGCATTTGAGAACAAATTCTCAAGTTTAGTCTTTATTCTTCTATTTGGTAAAATATAGTCTAATCTGTCATGATTAATTTTGTATCATACCTCTCTTTATAATATAAATTAATTTAAATTAGATGTTAA

mRNA sequence

ATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGA

Coding sequence (CDS)

ATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGA
BLAST of CSPI03G27700 vs. TrEMBL
Match: A0A0A0LBP9_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 8.2e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 93  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 152

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 102
           NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS
Sbjct: 153 NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 193

BLAST of CSPI03G27700 vs. TrEMBL
Match: A0A0A0KW48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 214 MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 273

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 274 NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 313

BLAST of CSPI03G27700 vs. TrEMBL
Match: A0A067KW09_JATCU (Gamma-tubulin complex component OS=Jatropha curcas GN=JCGZ_08590 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.5e-16
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKL-RTSDVSDLSQST--FNACNL 60
           MLV+QRAK IG+E LA KFDL+ LRA+  VLMEHLKG + ++S +SDL  ST   + C+L
Sbjct: 71  MLVIQRAKVIGYEELATKFDLKMLRALALVLMEHLKGNVEKSSHISDLDNSTSFMHGCSL 130

Query: 61  LDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK 98
           L S L  ILSI ++   I  D RKKP KR RE   +  KK
Sbjct: 131 LQSKLMDILSIQDLKTRIGIDERKKPVKRPREDDAVKQKK 170

BLAST of CSPI03G27700 vs. TrEMBL
Match: M1BX27_SOLTU (Gamma-tubulin complex component OS=Solanum tuberosum GN=PGSC0003DMG400021318 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLR----TSDVSDLSQSTFNACN 60
           +L+ QRAK IGH++LA KFDL+TLRA+ FVLME+LKGKLR    T D ++ S ST +ACN
Sbjct: 35  VLIQQRAKKIGHKSLANKFDLKTLRALSFVLMENLKGKLRDLSGTPDTAE-SSSTLDACN 94

Query: 61  LLDSNLEKI---LSIDEIMASICSDRRKK 83
           LL+ +L+K    + ++++ + IC+D+RK+
Sbjct: 95  LLNYDLDKTFANMGVEQLSSYICNDKRKR 122

BLAST of CSPI03G27700 vs. TrEMBL
Match: A0A0V0HHC0_SOLCH (Gamma-tubulin complex component OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-14
Identity = 45/89 (50.56%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLR----TSDVSDLSQSTFNACN 60
           +L+ QRAK IGH++LA KFDL+TLRA+ FVLME+LKGKLR    T D ++ S S+ +ACN
Sbjct: 35  VLIQQRAKKIGHKSLANKFDLKTLRALSFVLMENLKGKLRDLSGTPDTAE-SSSSLDACN 94

Query: 61  LLDSNLEKI---LSIDEIMASICSDRRKK 83
           LL+ +L+K    + ++++ + IC+D+RK+
Sbjct: 95  LLNYDLDKTFANMGVEQLSSYICNDKRKR 122

BLAST of CSPI03G27700 vs. TAIR10
Match: AT1G80245.1 (AT1G80245.1 Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1

Query: 2   LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNAC 61
           L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + C
Sbjct: 36  LAIQRAKISGHQELADKFDLKLLRSLGLVLMEH--ARKRVQNDTSLAPSVVHQLRLLDNC 95

Query: 62  NLLDSNLEKILSIDEIMASICSDRRKKPGKRSR 89
           NLL ++++  + I+EI+  IC ++ KK  ++ R
Sbjct: 96  NLLKTHVDDAVDIEEILTQICDNKSKKKARKRR 126

BLAST of CSPI03G27700 vs. TAIR10
Match: AT4G00695.3 (AT4G00695.3 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 1

Query: 2   LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGKLR--TSDVSDLSQ--STFNACN 61
           LV++RAK  G E+L A+KFDL+ LR++G VLME+++ ++   TS    + Q  S  ++CN
Sbjct: 36  LVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVRKRVEDDTSLAPSVVQELSLLDSCN 95

Query: 62  LLDSNLEKILSIDEIMASICSDRRKKPGKR 87
           LL ++++  + I+EI+  IC+      G R
Sbjct: 96  LLKTHVDDTVDIEEILTDICNKNWATKGTR 125

BLAST of CSPI03G27700 vs. NCBI nr
Match: gi|778682197|ref|XP_011651668.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 102
           NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS
Sbjct: 95  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 135

BLAST of CSPI03G27700 vs. NCBI nr
Match: gi|700203241|gb|KGN58374.1| (hypothetical protein Csa_3G633280 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 93  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 152

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 102
           NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS
Sbjct: 153 NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 193

BLAST of CSPI03G27700 vs. NCBI nr
Match: gi|778692248|ref|XP_011653427.1| (PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 35  MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 95  NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 134

BLAST of CSPI03G27700 vs. NCBI nr
Match: gi|700198692|gb|KGN53850.1| (hypothetical protein Csa_4G166940 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 214 MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 273

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 274 NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 313

BLAST of CSPI03G27700 vs. NCBI nr
Match: gi|778682178|ref|XP_011651660.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X1 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1

Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKR 87
           NLEKILSIDEIMASICSDRRKKPGKR
Sbjct: 95  NLEKILSIDEIMASICSDRRKKPGKR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBP9_CUCSA8.2e-47100.00Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1[more]
A0A0A0KW48_CUCSA1.3e-3988.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1[more]
A0A067KW09_JATCU7.5e-1654.00Gamma-tubulin complex component OS=Jatropha curcas GN=JCGZ_08590 PE=3 SV=1[more]
M1BX27_SOLTU3.1e-1451.69Gamma-tubulin complex component OS=Solanum tuberosum GN=PGSC0003DMG400021318 PE=... [more]
A0A0V0HHC0_SOLCH9.1e-1450.56Gamma-tubulin complex component OS=Solanum chacoense PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G80245.13.4e-1238.71 Spc97 / Spc98 family of spindle pole body (SBP) component[more]
AT4G00695.37.9e-0938.89 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|778682197|ref|XP_011651668.1|1.2e-46100.00PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus][more]
gi|700203241|gb|KGN58374.1|1.2e-46100.00hypothetical protein Csa_3G633280 [Cucumis sativus][more]
gi|778692248|ref|XP_011653427.1|1.8e-3988.00PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus][more]
gi|700198692|gb|KGN53850.1|1.8e-3988.00hypothetical protein Csa_4G166940 [Cucumis sativus][more]
gi|778682178|ref|XP_011651660.1|1.5e-38100.00PREDICTED: uncharacterized protein LOC101210446 isoform X1 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0007020 microtubule nucleation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
cellular_component GO:0045298 tubulin complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0043015 gamma-tubulin binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G27700.1CSPI03G27700.1mRNA