Cla002702.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002702
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 212993 .. 214693 (-)
Sequence length	408

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGTAAGTTCATTTGCTATCACAGCTTATTTCTCGTTATTCCAATAATGTTTGTATGTCATTGACTCATTGATGCCTTCGTCTACGTGCTAACTTCGCTTATGGAAATCCGAGTGTTCTTCTTGTGGATGTTGTATAACTACAATGTTTCATGTTCTTTTTAATCCTTTTTTTTTTTCCTTGGAAAGGATTAATATCTTCTACTTGACTTCAATAACAATGGACGATGATATGCTTTAGTATTCTAAGCTGTGTTGGCTTTTCTTCCTCAGATATTGATTTATGAGAATCTTTTACTATCATTTGCCGAGCATTTTTGACACTGTATTATGGTGTATGTGGCAGGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGTATGTTGCATTTCTTCTATTCTTATTACCTCTAGTTATGCCTTTTGTTTAGAAAGTCGCTAATTTCAACATAGATAAGTGGATAAGATACCAGTTGTCATCTAAAAGGTCAATGACTCAATCCTTTACCATGCAATTGTTGAACTAAAACAGAAATGTAAATTCTCCCCCTAGCATTATTATCACATAGCTACAAGGTTGAACTGATTACCACTCTAAAGGTTGATGATTCAATCTACCACTCTAACATTGTTGAACTAGAGAAAAAAATTGTCTAGAAAGTCGGTGTAAATTCTCTCTACCATCATTATCATACAGGCACCTCATTAGCTATCTACCATATTAGTTGCTGAACTAATTTTGGATTTATGGCACTATATATGTAGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGTTGGTACGATCTACAAAATCTCATATTAATTATTGCCTTGTCCTTGTTATTTTGGTATTCATAAAGCCTTCTATTTATATGAACTTTCATGATAGCACTTATGCATTAGATAGATATGTAGTAAATCAGTTAGATCATGTATTTTCTTAATGTTTTTGCTCAGTACTCCCAAATGGATGTTCTTTCCATTATGTGTTTTCAAATTACTAACACTAGATAGGTGTTGAGGATCACATTGTGATGGAAGATCTCACAGGTTTTATAAGATATATTGATAACTCCTCTCATAGCCAATCGATTTTGAGATGAAACCTAGAAGAACTTACTTTCTCACCGCCTACATTTTCTCTCTTTTTCTTCCTTCCTTGAGTCATCAGATTCATTCTATGTAGATTTACTAATTCAAATGCATGCTATCACTTGAACAAAGACTGCTTATAGGGGATTCTTATGTTCTACATGACTTGCATATTATGCTTCAAGTTAGTGTGTTTTTCCCAATTTGTATTGCCAACTCATTATATTTCTCTCATCTTCTTTTCCCCATCTTCTATCTCCTTCTAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

mRNA sequence

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

Coding sequence (CDS)

ATGGAAGAGGCAAAAGAAATTTTGGAGAATAATAGAATTGAAGATATCAGTTGGCTCTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATACAGATTTAGCTAAGAAATTTGATTTGAAGACGCTACGTGCGATTGGGTTTGTTTTGATGGAACATCTTAAAGGTGAACTTAGGGCGTCGGATGTTCCGGATCTGTCTCAATCTGCTGCCTTAAATGGGTGCAACTTATTAGACAGCAGTCTTGAGGAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGTTCAGACAGAAGGAAGAAACCTGGAAAAAGGCCACGGGAAAAGGTTGATTCCAGACAGAAGAACGACAAGTTGTGA

Protein sequence

MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGKRPREKVDSRQKNDKL

Homology

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A0A0KW48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 300 RPQEKVDSRYKKNDKL 314

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A0A0LBP9_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.2e-51
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDL+TLRA
Sbjct: 59  MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 118

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LR SDV DLSQS   N CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 119 IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 178

Query: 121 RPREKVD-SRQKNDK 135
           R REKVD S +KN K
Sbjct: 179 RSREKVDLSYKKNGK 192

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A061GD22_THECC (Gamma-tubulin complex component (Fragment) OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 73/135 (54.07%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 2   EEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAI 61
           E+ +E+L NN IED+SWLCSLSESELD+LIS+KML ++RA+VIGH  LAK FDLK LRA+
Sbjct: 30  EKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARVIGHVQLAKNFDLKMLRAL 89

Query: 62  GFVLMEHLKGELR-ASDVPDLSQSAA-LNGCNLLDSSLEEILSIDEIMASICSDRRKKPG 121
           GF+LME+LK +++ +S V  +++SAA ++  NLL S L++++SI+E+   I    RK+  
Sbjct: 90  GFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDDMMSIEELKEGIAIKTRKEFC 149

Query: 122 KRPREKVDSRQKNDK 135
           KRPREK D+  ++ K
Sbjct: 150 KRPREK-DAANRSSK 163

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: A0A061GK54_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 73/135 (54.07%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 2   EEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAI 61
           E+ +E+L NN IED+SWLCSLSESELD+LIS+KML ++RA+VIGH  LAK FDLK LRA+
Sbjct: 3   EKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARVIGHVQLAKNFDLKMLRAL 62

Query: 62  GFVLMEHLKGELR-ASDVPDLSQSAA-LNGCNLLDSSLEEILSIDEIMASICSDRRKKPG 121
           GF+LME+LK +++ +S V  +++SAA ++  NLL S L++++SI+E+   I    RK+  
Sbjct: 63  GFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDDMMSIEELKEGIAIKTRKEFC 122

Query: 122 KRPREKVDSRQKNDK 135
           KRPREK D+  ++ K
Sbjct: 123 KRPREK-DAANRSSK 136

[Close]

BLAST of Cla002702 vs. TrEMBL
Match: D7TVM0_VITVI (Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.6e-29
Identity = 67/130 (51.54%), Postives = 100/130 (76.92%), Query Frame = 1


Query: 7   ILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRAIGFVLM 66
           +L +NR+ED++WLCSLS+SELDMLIS+KM+VL+RAKVIGH DLA+KFDLK LRA+GF+LM
Sbjct: 6   VLGSNRLEDVNWLCSLSDSELDMLISLKMMVLRRAKVIGHEDLAEKFDLKMLRALGFILM 65

Query: 67  EHLKGELR-ASDVPDLS-QSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGKRPRE 126
           E+L+G+++  S +P L+     LN CNLL  SL++ +S +E+ A IC++ ++   +R  +
Sbjct: 66  EYLRGQVKDLSAIPGLAGLDKFLNECNLLKCSLKDTISTEELKACICTNSKRGTAERSSK 125

Query: 127 KVDSRQKNDK 135
           ++   +K  K
Sbjct: 126 ELAPNRKKQK 135

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|778692248|ref|XP_011653427.1| (PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 121 RPQEKVDSRYKKNDKL 135

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|700198692|gb|KGN53850.1| (hypothetical protein Csa_4G166940 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK +GH +LA+KFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQS-ALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPREKVDSR-QKNDKL 136
           RP+EKVDSR +KNDKL
Sbjct: 300 RPQEKVDSRYKKNDKL 314

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|659100239|ref|XP_008450997.1| (PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+NNR+EDISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDLKTLRA
Sbjct: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQSA LN CNLLDS++E+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPRE 125
           RPR+
Sbjct: 121 RPRK 124

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|659120858|ref|XP_008460383.1| (PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.7e-51
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+NNRIEDISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDLKTLR 
Sbjct: 1   MEEANEILKNNRIEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRT 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELR SDV DLSQS ALN CNLLDS+LE+ L IDEIM SIC DRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVTDLSQS-ALNACNLLDSNLEKSLPIDEIMTSICLDRRKKPGK 120

Query: 121 RPREKVD 128
           RPREKVD
Sbjct: 121 RPREKVD 126

[Close]

BLAST of Cla002702 vs. NCBI nr
Match: gi|778682197|ref|XP_011651668.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-50
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 1   MEEAKEILENNRIEDISWLCSLSESELDMLISIKMLVLQRAKVIGHTDLAKKFDLKTLRA 60
           MEEA EIL+N RIE ISWLCSLSESELD+LISIKMLVLQRAK IGH +LA+KFDL+TLRA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 60

Query: 61  IGFVLMEHLKGELRASDVPDLSQSAALNGCNLLDSSLEEILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LR SDV DLSQS   N CNLLDS+LE+ILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPREKVD-SRQKNDK 135
           R REKVD S +KN K
Sbjct: 121 RSREKVDLSYKKNGK 134

The following BLAST results are available for this feature:

BLAST of Cla002702 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW48_CUCSA	1.2e-53	84.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1	[more]
A0A0A0LBP9_CUCSA	7.2e-51	82.22	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1	[more]
A0A061GD22_THECC	1.6e-29	54.07	Gamma-tubulin complex component (Fragment) OS=Theobroma cacao GN=TCM_029316 PE=3...	[more]
A0A061GK54_THECC	1.6e-29	54.07	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_029316 PE=3 SV=1	[more]
D7TVM0_VITVI	4.6e-29	51.54	Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1	[more]

BLAST of Cla002702 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692248\|ref\|XP_011653427.1\|	1.7e-53	84.56	PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus]	[more]
gi\|700198692\|gb\|KGN53850.1\|	1.7e-53	84.56	hypothetical protein Csa_4G166940 [Cucumis sativus]	[more]
gi\|659100239\|ref\|XP_008450997.1\|	6.5e-53	87.10	PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]	[more]
gi\|659120858\|ref\|XP_008460383.1\|	2.7e-51	85.83	PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo]	[more]
gi\|778682197\|ref\|XP_011651668.1\|	1.0e-50	82.22	PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0005840	ribosome
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla002702	Cla002702	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla002702	Cla002702.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla002702.1.cds4	Cla002702.1.cds4	CDS
Cla002702.1.cds3	Cla002702.1.cds3	CDS
Cla002702.1.cds2	Cla002702.1.cds2	CDS
Cla002702.1.cds1	Cla002702.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 26..116 score: 2.5
None	No IPR available	PANTHER	PTHR19302:SF39	SUBFAMILY NOT NAMED	coord: 26..116 score: 2.5