Cla002670 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002670
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Atozi1 (Fragment) (AHRD V1 **-- A6N1R6_ORYSI); contains Interpro domain(s) IPR009515 Protein of unknown function DUF1138
Location	Chr3 : 13666041 .. 13666380 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAACTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGTAATTACCAATCATCATTTAGTTTTGCTGTTTCTTTGATGTGCTACCATTGCTCTATTGTCCTGATTTCTCATTCTTTTTAATGGATTTTGTTCAGGAACAACCCCAAGTACTGTTTCCAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCATAA

mRNA sequence

ATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAACTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCCAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCATAA

Coding sequence (CDS)

ATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAACTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCCAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCATAA

Protein sequence

MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

Homology

[Close]

BLAST of Cla002670 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Cla002670 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-30
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA KYI+ ++LG+ A+AY+ D L+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK   E+
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

[Close]

BLAST of Cla002670 vs. TrEMBL
Match: A0A0B0MGC6_GOSAR (Monopolar spindle 2 OS=Gossypium arboreum GN=F383_19537 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYI+GS++ + AVAY+ D LVAD+KIFGGTTP TVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIGSVVASFAVAYVIDKLVADEKIFGGTTPHTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPE 80
          PVVMNPISRQNFIVK+  E
Sbjct: 61 PVVMNPISRQNFIVKSGSE 79

[Close]

BLAST of Cla002670 vs. TrEMBL
Match: A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-30
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYI+ SL G+ A+AY+SD LV+D KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

[Close]

BLAST of Cla002670 vs. TrEMBL
Match: A0A068VCS9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004124001 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.3e-30
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          M+AKYI+  L+G+ A+AY+ DHL+ADKKIFGG TP TV N EWWEETDKKFQAWPRTAGP
Sbjct: 1  MSAKYILSGLVGSFAIAYVCDHLIADKKIFGGKTPPTVENKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK R
Sbjct: 61 PVVMNPISRQNFIVKNR 77

[Close]

BLAST of Cla002670 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-35
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGATAVAYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK+R
Sbjct: 61 PVVMNPISRQNFIVKSR 77

[Close]

BLAST of Cla002670 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Cla002670 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-30
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA KYI+ ++LG+ A+AY+ D L+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK   E+
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

[Close]

BLAST of Cla002670 vs. NCBI nr
Match: gi|728810096|gb|KHF99441.1| (Monopolar spindle 2 [Gossypium arboreum])

HSP 1 Score: 137.9 bits (346), Expect = 7.8e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYI+GS++ + AVAY+ D LVAD+KIFGGTTP TVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIGSVVASFAVAYVIDKLVADEKIFGGTTPHTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPE 80
          PVVMNPISRQNFIVK+  E
Sbjct: 61 PVVMNPISRQNFIVKSGSE 79

[Close]

BLAST of Cla002670 vs. NCBI nr
Match: gi|823136581|ref|XP_012468054.1| (PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MAAKYIVGSLLGATAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKYI+ SL G+ A+AY+SD LV+D KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

The following BLAST results are available for this feature:

BLAST of Cla002670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYC7_CUCSA	1.3e-34	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1	[more]
A0A061EWV8_THECC	2.4e-30	78.75	Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1	[more]
A0A0B0MGC6_GOSAR	5.4e-30	81.01	Monopolar spindle 2 OS=Gossypium arboreum GN=F383_19537 PE=4 SV=1	[more]
A0A0D2NRU0_GOSRA	7.1e-30	80.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1	[more]
A0A068VCS9_COFCA	9.3e-30	79.22	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004124001 PE=4 SV=1	[more]

BLAST of Cla002670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134221\|ref\|XP_008467091.1\|	2.8e-35	94.81	PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo]	[more]
gi\|449463344\|ref\|XP_004149394.1\|	1.8e-34	91.25	PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus]	[more]
gi\|590636108\|ref\|XP_007028779.1\|	3.5e-30	78.75	Uncharacterized protein TCM_024708 [Theobroma cacao]	[more]
gi\|728810096\|gb\|KHF99441.1\|	7.8e-30	81.01	Monopolar spindle 2 [Gossypium arboreum]	[more]
gi\|823136581\|ref\|XP_012468054.1\|	1.0e-29	80.00	PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009515	DUF1138

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15193	watermelon EST collection version 2.0	transcribed_cluster
WMU19202	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU22051	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU46454	watermelon EST collection version 2.0	transcribed_cluster
WMU56638	watermelon EST collection version 2.0	transcribed_cluster
WMU68997	watermelon EST collection version 2.0	transcribed_cluster
WMU77992	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002670	Cla002670.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU22051	WMU22051	transcribed_cluster
WMU19202	WMU19202	transcribed_cluster
WMU77992	WMU77992	transcribed_cluster
WMU68997	WMU68997	transcribed_cluster
WMU15193	WMU15193	transcribed_cluster
WMU56638	WMU56638	transcribed_cluster
WMU46454	WMU46454	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 3..75 score: 1.6
None	No IPR available	PANTHER	PTHR34267	FAMILY NOT NAMED	coord: 2..79 score: 3.2
None	No IPR available	PANTHER	PTHR34267:SF1	AT0ZI1 PROTEIN	coord: 2..79 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002670	Melon (DHL92) v3.5.1	mewmB270
Cla002670	Watermelon (Charleston Gray)	wcgwmB225
Cla002670	Cucumber (Chinese Long) v2	cuwmB018
Cla002670	Cucumber (Gy14) v2	cgybwmB021
Cla002670	Melon (DHL92) v3.6.1	medwmB261
Cla002670	Watermelon (97103) v2	wmwmbB126
Cla002670	Cucumber (Gy14) v1	cgywmB713