Cla002535 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002535
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Xyloglucan endotransglucosylase/hydrolase protein 1 (AHRD V1 ***- B6TQ18_MAIZE); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16
Location	Chr3 : 17568809 .. 17570646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTTATGGAATCAATAGCTACTTCCCTGTCTTTATTGTTTTTCTGATTATAAATTTTGTGAAGATTAATGTTGTTTGTCAAGAAGTTAAGTTTGATCAGAACTATGTTGTTACTTACGGCCAAGATCATTTCTTCCGGTTAGGAGGTGGAACAGAAGTTCAACTTTCACTTGATCGAGCTTCAGGTTCTTCTCTAAAACTTTTAATTCTCTCATTTTAAAATTAGGTTAGCATTTAGTTATTATAATTTAGTTAGCTAGTCTTCTATCCAAACATCTAACGTAATATAATTATGGGTTAAAATACTATTTTGGTTCTAATACTTTTAAATTTATTCAATTTTAGTCTCCGTACTTTCTCTTAAAATTAGTCTCTACTGTTGATTTTTTTTTTTTTTTAAAGAAAAAGAACTTTTTGTTTTCTATTAGTATTTTTACGAAAAATTTTAAAAGTATATTCACATATTGTATTTATTTACATCAAAATTATTATTATTATTAAATAATTTTAGTAAAAATTCACTTTGACAACTAAATTTACCATTTATTAAAAGTATATTAACTCTAGGTTGAAAAGTGATATTTTAACCCATAACTATTTTACTTTGTAAAATGTTTTTATTGCCAACAGTTACAATTGAGAAAACATGGCAAACAATTCGTGTCAAATTACTAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAACTTTTACTTCCTTTTGATTCCTCAAAAAGTTTCTTATAGTTTGATGGATCATTATTATAGCTAAATGATATGTATTATTTTTGGTTAAACAAATAAAGGAACTGGGTTCAAGTCGAAGATTGGGTATGGTTCAGGATATTTTCACATGAAATTAAAGCTACCTTCCAGACATTCTCCTGGAGTTGTCACAACTTATTATGTAAGATCATTTATTTATTTACTTTTCCAATTCATTTCTTCTTTTGCCTCTTTATATCTGATTATTTAAATGCATGTTTAGATTTTTTTAATTTCTTTTTCTATTTATAAATATAAGAAAATGAACAAAAATTTTTATAAATACAACAAAATTTTACTATCGATCCATATTTATACACTTTTTGAACCACCTTTGCGTAATTAATAATAGGTTAAATTATAATTTAGTCTTTTTAGTTCTTTATAATTTGATAAAATTTCAGTAGGATTATTTGTTAAGTTTCATCAAACCATAAAGATTGAATTCTAATTATAAAATCATAACAACTAAATTCTAACTTTCTCCGAATTACAAGGATCAAATTTGAAATTTACACTTTTTTGAAAAGAAAAAAAAAAAAATCAATGTTTATGTTGGGACCACGATAAGGACATGCAACAATTAAGACCATACATTAGAAATTATTTATGAGGATTTTACTATTTGAACAATAAACAAGTAACAAATAACAAGTGATCAATAGGTATACTTGAATATATCAACTAGGTAATCATCCTCATCATACTCATTTACGAAGATTTTATCAAACGTCAAAAAACTAAATTCTAACTTTTTCGTAACTATATGGACTAAATTTATTATTTAACAAACTAAAATTATATGGAAGAGAGAATATTATTGTGTGATTTGAAATAACTATATGGTACACCATGATGTTTACAGTTACATTCAAGCCCAGACAACAATGGTGGAGTTCATGATGAGGTTGATTTTGAGTTCTTGGGGACAGATGGGCCATTATATATTCTCCAAACAAATGTTTTTGCAGATGACAATGGAGGAAGAGAGCAAAGATTACGTTTATGGTTTGATCCCACCTTAGCATTTCATGACTATGCAATTCTTTGGAATTCCCATCAAATTGTGTAA

mRNA sequence

ATGGGATTTTATGGAATCAATAGCTACTTCCCTGTCTTTATTGTTTTTCTGATTATAAATTTTGTGAAGATTAATGTTGTTTGTCAAGAAGTTAAGTTTGATCAGAACTATGTTGTTACTTACGGCCAAGATCATTTCTTCCGGTTAGGAGGTGGAACAGAAGTTCAACTTTCACTTGATCGAGCTTCAGGAACTGGGTTCAAGTCGAAGATTGGGTATGGTTCAGGATATTTTCACATGAAATTAAAGCTACCTTCCAGACATTCTCCTGGAGTTGTCACAACTTATTATTTACATTCAAGCCCAGACAACAATGGTGGAGTTCATGATGAGGTTGATTTTGAGTTCTTGGGGACAGATGGGCCATTATATATTCTCCAAACAAATGTTTTTGCAGATGACAATGGAGGAAGAGAGCAAAGATTACGTTTATGGTTTGATCCCACCTTAGCATTTCATGACTATGCAATTCTTTGGAATTCCCATCAAATTGTGTAA

Coding sequence (CDS)

ATGGGATTTTATGGAATCAATAGCTACTTCCCTGTCTTTATTGTTTTTCTGATTATAAATTTTGTGAAGATTAATGTTGTTTGTCAAGAAGTTAAGTTTGATCAGAACTATGTTGTTACTTACGGCCAAGATCATTTCTTCCGGTTAGGAGGTGGAACAGAAGTTCAACTTTCACTTGATCGAGCTTCAGGAACTGGGTTCAAGTCGAAGATTGGGTATGGTTCAGGATATTTTCACATGAAATTAAAGCTACCTTCCAGACATTCTCCTGGAGTTGTCACAACTTATTATTTACATTCAAGCCCAGACAACAATGGTGGAGTTCATGATGAGGTTGATTTTGAGTTCTTGGGGACAGATGGGCCATTATATATTCTCCAAACAAATGTTTTTGCAGATGACAATGGAGGAAGAGAGCAAAGATTACGTTTATGGTTTGATCCCACCTTAGCATTTCATGACTATGCAATTCTTTGGAATTCCCATCAAATTGTGTAA

Protein sequence

MGFYGINSYFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV

Homology

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BLAST of Cla002535 vs. Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.8e-39
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 31  VKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGYGSGYFHMKLKLPSRHSP 90
           + FD NYVVT+GQDH  +L  G EVQLS+D +SG+GF+SK  YGSG+F M++KLP R S 
Sbjct: 30  IDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSA 89

Query: 91  GVVTTYYLHSSPDNNGGVHDEVDFEFLGT-DGPLYILQTNVFADDNGGREQRLRLWFDPT 150
           GVVT +YL S     G  HDEVDFEFLG   G    +QTNVF++  GGREQ+   WFDPT
Sbjct: 90  GVVTAFYLTS----KGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPT 149

Query: 151 LAFHDYAILWNSHQIV 166
            +FH Y ILWN +QIV
Sbjct: 150 TSFHTYGILWNPYQIV 161

[Close]

BLAST of Cla002535 vs. Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-37
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 1


Query: 12  VFIVFLIINF----VKINVVCQ-EVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTG 71
           V +++LII       ++N + Q +V FD NYVVT+GQ++  +L  G EVQLSLD +SG+G
Sbjct: 10  VSVLYLIIRVDARAYEVNGIDQSKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSG 69

Query: 72  FKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYIL 131
           F+SK  Y SG+F +++K+P + + GVVT +YL S     G  HDEVDFEFLG       +
Sbjct: 70  FESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTS----KGNTHDEVDFEFLGNKEGKLAV 129

Query: 132 QTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           QTNVF +  G REQ+L LWFDP+  FH YAILWN +QIV
Sbjct: 130 QTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIV 164

[Close]

BLAST of Cla002535 vs. Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 79/162 (48.77%), Postives = 102/162 (62.96%), Query Frame = 1


Query: 10  FPVFIVFLIINFVKINV-----VCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASG 69
           F VF+V L I  V   V     + + V F QNY+VT+GQ H   L  G EV L +D++SG
Sbjct: 7   FSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSG 66

Query: 70  TGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLG-TDGPL 129
            GF+SK  YGSG F M++K+PS ++ G+VT +YL S     GG HDE+DFEFLG  +G  
Sbjct: 67  GGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTS----KGGGHDEIDFEFLGNNNGKP 126

Query: 130 YILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
             LQTN+F +  G RE+R  LWF+PT  +H Y +LWN +QIV
Sbjct: 127 VTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIV 164

[Close]

BLAST of Cla002535 vs. Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-33
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 30  EVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGYGSGYFHMKLKLPSRHS 89
           +V FD+NYV T+ QDH   + GG EVQLSLD+ +GTGF+++  Y  G+F M +KL    S
Sbjct: 29  DVPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDS 88

Query: 90  PGVVTTYYLHSSPDNNGGVHDEVDFEFLGT-DGPLYILQTNVFADDNGGREQRLRLWFDP 149
            G VT +YL S        HDE+DFEFLG   G  YILQTNVF+   G REQR+ LWFDP
Sbjct: 89  AGTVTAFYLSS----QNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDP 148

Query: 150 TLAFHDYAILWNSHQI 165
           T  +H Y++LWN + I
Sbjct: 149 TKDYHSYSVLWNLYMI 160

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BLAST of Cla002535 vs. Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-33
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 30  EVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGYGSGYFHMKLKLPSRHS 89
           +V F +NYV T+  DH  +L GG+E+QL LD+ +GTGF+SK  Y  G+F M +KLP+  +
Sbjct: 31  DVPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDT 90

Query: 90  PGVVTTYYLHSSPDNNGGVHDEVDFEFLGT-DGPLYILQTNVFADDNGGREQRLRLWFDP 149
            GVVT +YL S+  NN   HDE+DFEFLG   G   ILQTNVF    G REQR+ LWFDP
Sbjct: 91  AGVVTAFYLSST--NN--EHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDP 150

Query: 150 TLAFHDYAILWNSHQIV 166
           + A+H Y++LWN +QIV
Sbjct: 151 SKAYHTYSVLWNLYQIV 163

[Close]

BLAST of Cla002535 vs. TrEMBL
Match: A0A0A0M3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G662750 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-67
Identity = 126/166 (75.90%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MGFYGINS-YFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSL 60
           MGFYGI+S YFP+FIV +IIN ++  VVC+E  FDQNY+VTYGQDHF R  GG +VQLSL
Sbjct: 1   MGFYGISSTYFPLFIVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSL 60

Query: 61  DRASGTGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGT 120
           D ASGTGFKSKIGYGSG+FH+KLKLPSRHSPG      LHSSPD N G HDEVDFEFLGT
Sbjct: 61  DLASGTGFKSKIGYGSGHFHIKLKLPSRHSPG------LHSSPDKNVGAHDEVDFEFLGT 120

Query: 121 DGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
            GP+Y+LQTN+FA+DNGGREQ++RLWFDP+L+FHDYAILWNSHQIV
Sbjct: 121 -GPVYVLQTNIFANDNGGREQKIRLWFDPSLSFHDYAILWNSHQIV 159

[Close]

BLAST of Cla002535 vs. TrEMBL
Match: N0DX90_CUCSA (Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth30 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-60
Identity = 119/170 (70.00%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 1   MGFYGINS-YFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSL 60
           MGFYGI+S YFP+FIV +IIN ++  VVC+E  FDQNY+VTYGQDHF R  GG +VQLSL
Sbjct: 1   MGFYGISSTYFPLFIVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSL 60

Query: 61  DRASG----TGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFE 120
           D ASG       +  I + +  F  K KLPSRHSPGVVTTYYLHSSPD N G HDEVDFE
Sbjct: 61  DLASGPLNWVQVEDWIWFRT--FSHKTKLPSRHSPGVVTTYYLHSSPDKNVGAHDEVDFE 120

Query: 121 FLGTDGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           FLGT GP+Y+LQTN+FA+DNGGREQ++RLWFDP+L+FHDYAILWNSHQIV
Sbjct: 121 FLGT-GPVYVLQTNIFANDNGGREQKIRLWFDPSLSFHDYAILWNSHQIV 167

[Close]

BLAST of Cla002535 vs. TrEMBL
Match: N0DX41_CUCSA (Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth26 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-52
Identity = 103/153 (67.32%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 14  IVFLIINFVKINVVCQE-VKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIG 73
           +V + I+ +K +VV Q+ + FD+NYVVT  QDH  RL GGTE QL+LD+A G  F+S + 
Sbjct: 9   LVLVFISCLKKDVVSQKYLNFDKNYVVTSSQDHVLRLNGGTEAQLTLDQAGGGAFQSLLK 68

Query: 74  YGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFA 133
           YGSGYF M++KLPS HSPGVVTT+Y+ S       VHDE+DFEFLGTDGP YILQTNVFA
Sbjct: 69  YGSGYFEMQIKLPSNHSPGVVTTFYVRSHFLTCDNVHDEIDFEFLGTDGPSYILQTNVFA 128

Query: 134 DDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           DD GGRE+RL LWFDPTLAFHDY ILWNSHQIV
Sbjct: 129 DDVGGREERLHLWFDPTLAFHDYGILWNSHQIV 161

[Close]

BLAST of Cla002535 vs. TrEMBL
Match: A0A0A0KXI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308600 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 14  IVFLIINFVKINVVCQE-VKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIG 73
           +V + I+ +K +VV Q+ + FD+NYVV   QDH  RL GGTE QL+LD+A G  F+S + 
Sbjct: 9   LVLVFISCLKKDVVSQKYLNFDKNYVVMSSQDHVLRLNGGTEAQLTLDQAGGGAFQSLLK 68

Query: 74  YGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFA 133
           YGSGYF M++KLPS HSPGV     LHS   ++  VHDE+DFEFLGTDGP YILQTNVFA
Sbjct: 69  YGSGYFEMQIKLPSNHSPGV-----LHSDIGSDN-VHDEIDFEFLGTDGPSYILQTNVFA 128

Query: 134 DDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           DD GGRE+RL LWFDPTLAFH+Y ILWNSHQIV
Sbjct: 129 DDVGGREERLHLWFDPTLAFHNYGILWNSHQIV 155

[Close]

BLAST of Cla002535 vs. TrEMBL
Match: A0A0D2QTI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155700 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-42
Identity = 80/135 (59.26%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 31  VKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGYGSGYFHMKLKLPSRHSP 90
           V FD+NY VT+G  H   +  GTEV L +D+ASG GF+S +GY SG+F +K+KLP++   
Sbjct: 16  VSFDKNYHVTWGNSHVTSVNQGTEVHLRMDKASGAGFESNVGYASGFFQIKIKLPNKDFS 75

Query: 91  GVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFADDNGGREQRLRLWFDPTL 150
           GVV  +YL S PD  GG HDE+DFEFLG++GP + LQTNVFA+D GGREQR  LWFDPT 
Sbjct: 76  GVVVAFYLTSDPDGKGGNHDELDFEFLGSNGPPFTLQTNVFANDEGGREQRFHLWFDPTS 135

Query: 151 AFHDYAILWNSHQIV 166
            FH Y I+WN HQ+V
Sbjct: 136 DFHTYGIVWNQHQVV 150

[Close]

BLAST of Cla002535 vs. NCBI nr
Match: gi|449449697|ref|XP_004142601.1| (PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.1e-73
Identity = 132/166 (79.52%), Postives = 150/166 (90.36%), Query Frame = 1


Query: 1   MGFYGINS-YFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSL 60
           MGFYGI+S YFP+FIV +IIN ++  VVC+E  FDQNY+VTYGQDHF R  GG +VQLSL
Sbjct: 1   MGFYGISSTYFPLFIVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSL 60

Query: 61  DRASGTGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGT 120
           D ASGTGFKSKIGYGSG+FH+KLKLPSRHSPGVVTTYYLHSSPD N G HDEVDFEFLGT
Sbjct: 61  DLASGTGFKSKIGYGSGHFHIKLKLPSRHSPGVVTTYYLHSSPDKNVGAHDEVDFEFLGT 120

Query: 121 DGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
            GP+Y+LQTN+FA+DNGGREQ++RLWFDP+L+FHDYAILWNSHQIV
Sbjct: 121 -GPVYVLQTNIFANDNGGREQKIRLWFDPSLSFHDYAILWNSHQIV 165

[Close]

BLAST of Cla002535 vs. NCBI nr
Match: gi|700211615|gb|KGN66711.1| (hypothetical protein Csa_1G662750 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-67
Identity = 126/166 (75.90%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MGFYGINS-YFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSL 60
           MGFYGI+S YFP+FIV +IIN ++  VVC+E  FDQNY+VTYGQDHF R  GG +VQLSL
Sbjct: 1   MGFYGISSTYFPLFIVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSL 60

Query: 61  DRASGTGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGT 120
           D ASGTGFKSKIGYGSG+FH+KLKLPSRHSPG      LHSSPD N G HDEVDFEFLGT
Sbjct: 61  DLASGTGFKSKIGYGSGHFHIKLKLPSRHSPG------LHSSPDKNVGAHDEVDFEFLGT 120

Query: 121 DGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
            GP+Y+LQTN+FA+DNGGREQ++RLWFDP+L+FHDYAILWNSHQIV
Sbjct: 121 -GPVYVLQTNIFANDNGGREQKIRLWFDPSLSFHDYAILWNSHQIV 159

[Close]

BLAST of Cla002535 vs. NCBI nr
Match: gi|481023344|emb|CCH26640.1| (putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 3.9e-60
Identity = 119/170 (70.00%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 1   MGFYGINS-YFPVFIVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSL 60
           MGFYGI+S YFP+FIV +IIN ++  VVC+E  FDQNY+VTYGQDHF R  GG +VQLSL
Sbjct: 1   MGFYGISSTYFPLFIVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSL 60

Query: 61  DRASG----TGFKSKIGYGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFE 120
           D ASG       +  I + +  F  K KLPSRHSPGVVTTYYLHSSPD N G HDEVDFE
Sbjct: 61  DLASGPLNWVQVEDWIWFRT--FSHKTKLPSRHSPGVVTTYYLHSSPDKNVGAHDEVDFE 120

Query: 121 FLGTDGPLYILQTNVFADDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           FLGT GP+Y+LQTN+FA+DNGGREQ++RLWFDP+L+FHDYAILWNSHQIV
Sbjct: 121 FLGT-GPVYVLQTNIFANDNGGREQKIRLWFDPSLSFHDYAILWNSHQIV 167

[Close]

BLAST of Cla002535 vs. NCBI nr
Match: gi|481023336|emb|CCH26636.1| (putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.9e-52
Identity = 103/153 (67.32%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 14  IVFLIINFVKINVVCQE-VKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIG 73
           +V + I+ +K +VV Q+ + FD+NYVVT  QDH  RL GGTE QL+LD+A G  F+S + 
Sbjct: 9   LVLVFISCLKKDVVSQKYLNFDKNYVVTSSQDHVLRLNGGTEAQLTLDQAGGGAFQSLLK 68

Query: 74  YGSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFA 133
           YGSGYF M++KLPS HSPGVVTT+Y+ S       VHDE+DFEFLGTDGP YILQTNVFA
Sbjct: 69  YGSGYFEMQIKLPSNHSPGVVTTFYVRSHFLTCDNVHDEIDFEFLGTDGPSYILQTNVFA 128

Query: 134 DDNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           DD GGRE+RL LWFDPTLAFHDY ILWNSHQIV
Sbjct: 129 DDVGGREERLHLWFDPTLAFHDYGILWNSHQIV 161

[Close]

BLAST of Cla002535 vs. NCBI nr
Match: gi|764529133|ref|XP_004292365.2| (PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 209.5 bits (532), Expect = 4.4e-51
Identity = 98/152 (64.47%), Postives = 119/152 (78.29%), Query Frame = 1


Query: 14  IVFLIINFVKINVVCQEVKFDQNYVVTYGQDHFFRLGGGTEVQLSLDRASGTGFKSKIGY 73
           I FL+++ +  +    +V+FD+NYVV YG DH  +L  G EVQLSLD ASG+GF SK GY
Sbjct: 2   IFFLVLSVM--SEAFDDVRFDENYVVRYGNDHISKLDQGREVQLSLDLASGSGFNSKRGY 61

Query: 74  GSGYFHMKLKLPSRHSPGVVTTYYLHSSPDNNGGVHDEVDFEFLGTDGPLYILQTNVFAD 133
           GSG+F M++KLP+RHSPGVVTT+YL S PDN  G HDE+DFEFLGT+GP++ LQTN+FA+
Sbjct: 62  GSGFFEMRIKLPARHSPGVVTTFYLSSHPDNKPGNHDELDFEFLGTEGPVFSLQTNIFAN 121

Query: 134 DNGGREQRLRLWFDPTLAFHDYAILWNSHQIV 166
           DNG REQRL LWFDPT  FH Y ILWN  QIV
Sbjct: 122 DNGNREQRLHLWFDPTKDFHKYGILWNHRQIV 151

The following BLAST results are available for this feature:

BLAST of Cla002535 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XTH2_ARATH	3.8e-39	58.82	Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=X...	[more]
XTH1_ARATH	6.1e-37	50.94	Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thal...	[more]
XTH3_ARATH	1.3e-34	48.77	Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=X...	[more]
XTH_WHEAT	3.1e-33	52.21	Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH P...	[more]
XTH_BRAOB	5.4e-33	54.01	Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=...	[more]

BLAST of Cla002535 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3A1_CUCSA	1.4e-67	75.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G662750 PE=4 SV=1	[more]
N0DX90_CUCSA	2.7e-60	70.00	Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth30 P...	[more]
N0DX41_CUCSA	2.7e-52	67.32	Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth26 P...	[more]
A0A0A0KXI7_CUCSA	1.6e-47	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308600 PE=4 SV=1	[more]
A0A0D2QTI4_GOSRA	1.2e-42	59.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155700 PE=4 SV=1	[more]

BLAST of Cla002535 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449697\|ref\|XP_004142601.1\|	4.1e-73	79.52	PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucumis sat...	[more]
gi\|700211615\|gb\|KGN66711.1\|	1.9e-67	75.90	hypothetical protein Csa_1G662750 [Cucumis sativus]	[more]
gi\|481023344\|emb\|CCH26640.1\|	3.9e-60	70.00	putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus]	[more]
gi\|481023336\|emb\|CCH26636.1\|	3.9e-52	67.32	putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus]	[more]
gi\|764529133\|ref\|XP_004292365.2\|	4.4e-51	64.47	PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Fragaria ve...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000757	GH16
IPR013320	ConA-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042546	cell wall biogenesis
biological_process	GO:0010411	xyloglucan metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0016762	xyloglucan:xyloglucosyl transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002535	Cla002535.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000757	Glycoside hydrolase family 16	PFAM	PF00722	Glyco_hydro_16	coord: 34..164 score: 6.5
IPR000757	Glycoside hydrolase family 16	PROFILE	PS51762	GH16_2	coord: 2..165 score: 15
IPR013320	Concanavalin A-like lectin/glucanase domain	GENE3D	G3DSA:2.60.120.200		coord: 26..165 score: 8.9
IPR013320	Concanavalin A-like lectin/glucanase domain	unknown	SSF49899	Concanavalin A-like lectins/glucanases	coord: 33..165 score: 1.32
None	No IPR available	PANTHER	PTHR31062	FAMILY NOT NAMED	coord: 3..165 score: 1.4
None	No IPR available	PANTHER	PTHR31062:SF43	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 2-RELATED	coord: 3..165 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002535	Cla97C03G061640	Watermelon (97103) v2	wmwmbB126
Cla002535	Csa1G662750	Cucumber (Chinese Long) v2	cuwmB011
Cla002535	ClCG03G011190	Watermelon (Charleston Gray)	wcgwmB225
Cla002535	CSPI01G32700	Wild cucumber (PI 183967)	cpiwmB013
Cla002535	Cp4.1LG18g02650	Cucurbita pepo (Zucchini)	cpewmB350
Cla002535	CsGy1G031520	Cucumber (Gy14) v2	cgybwmB013
Cla002535	CsaV3_1G044870	Cucumber (Chinese Long) v3	cucwmB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002535	Cucumber (Chinese Long) v3	cucwmB022
Cla002535	Wax gourd	wgowmB655
Cla002535	Cucumber (Gy14) v1	cgywmB638
Cla002535	Cucumber (Gy14) v1	cgywmB641
Cla002535	Cucurbita maxima (Rimu)	cmawmB051
Cla002535	Cucurbita maxima (Rimu)	cmawmB093
Cla002535	Cucurbita moschata (Rifu)	cmowmB043
Cla002535	Cucurbita moschata (Rifu)	cmowmB084
Cla002535	Melon (DHL92) v3.5.1	mewmB266
Cla002535	Cucumber (Chinese Long) v2	cuwmB017
Cla002535	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla002535	Melon (DHL92) v3.6.1	medwmB254
Cla002535	Melon (DHL92) v3.6.1	medwmB257