Cla002275 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002275
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 1332896 .. 1333227 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGTAAAAATTCACTCAAATTCTCATTTCTCAAACAAACCCATTTACAAAACAAACAAATACCAAACCAATTAATTTATTCTTGGGTATTTCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGA

mRNA sequence

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGA

Coding sequence (CDS)

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGA

Protein sequence

MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Cla002275 vs. TrEMBL
Match: A0A0A0K2C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP +S G LKT FS QEK+TRDEESTTP+RRSPPST ADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Cla002275 vs. TrEMBL
Match: E0CTD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-14
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFL---KTTFSHQEKLTRDEESTTPSRRSPPSTT 60
          MKK+G FAASVAAASATA+SAP SS+GFL   K   S  E +   +   + S+RS   ++
Sbjct: 1  MKKSGFFAASVAAASATAISAP-SSSGFLCNSKIQLSRDEAVAGKDIENSESQRS---SS 60

Query: 61 ADQFAPRFDGLRFIETLVTAHR 80
          AD+FAPRFDGLRFIETLVTAHR
Sbjct: 61 ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Cla002275 vs. TrEMBL
Match: A0A067JMU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKK+G+FAASVAAASATA+SA   S+    ++FS   K+    E    S+    S++ ++
Sbjct: 1  MKKSGIFAASVAAASATAVSASSPSSN---SSFSFSSKMQLSHEEARSSKDQERSSSTEK 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGL+FIETLVTAHR
Sbjct: 61 FAPRFDGLKFIETLVTAHR 76

[Close]

BLAST of Cla002275 vs. TrEMBL
Match: A0A059DGL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 1   MKKTGLFAASVAAASATALSAPLSSAGFLKTT---FSHQEKLTRDEESTTPSRRSPPSTT 60
           MKK+GLFA S AAASATA+++  SS  F  T+   F +QE ++  E++ +    S  S +
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSSTEQAAS----SQNSGS 110

Query: 61  ADQFAPRFDGLRFIETLVTAHR 80
           AD+FAPRFDGLRFIETLVTAHR
Sbjct: 111 ADKFAPRFDGLRFIETLVTAHR 128

[Close]

BLAST of Cla002275 vs. TrEMBL
Match: A0A061EAV9_THECC (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-11
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSA---PLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTT 60
          MKK+GLFAASVAAASATA+SA   P S      + F    +  ++ ES+   +    S +
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHESSAIKK----SPS 60

Query: 61 ADQFAPRFDGLRFIETLVTAHR 80
           D+FAPRFDGLRFIETL+TAHR
Sbjct: 61 KDKFAPRFDGLRFIETLITAHR 78

[Close]

BLAST of Cla002275 vs. NCBI nr
Match: gi|700188380|gb|KGN43613.1| (hypothetical protein Csa_7G047970 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-30
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP +S G LKT FS QEK+TRDEESTTP+RRSPPST ADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Cla002275 vs. NCBI nr
Match: gi|659110624|ref|XP_008455325.1| (PREDICTED: uncharacterized protein LOC103495516 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEK-LTRDEESTTPSRRSPPSTTAD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEK + RDEE TTP+RRSPPST +D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Cla002275 vs. NCBI nr
Match: gi|225446347|ref|XP_002272559.1| (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-14
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFL---KTTFSHQEKLTRDEESTTPSRRSPPSTT 60
          MKK+G FAASVAAASATA+SAP SS+GFL   K   S  E +   +   + S+RS   ++
Sbjct: 1  MKKSGFFAASVAAASATAISAP-SSSGFLCNSKIQLSRDEAVAGKDIENSESQRS---SS 60

Query: 61 ADQFAPRFDGLRFIETLVTAHR 80
          AD+FAPRFDGLRFIETLVTAHR
Sbjct: 61 ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Cla002275 vs. NCBI nr
Match: gi|802752590|ref|XP_012088290.1| (PREDICTED: uncharacterized protein LOC105646941 [Jatropha curcas])

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKK+G+FAASVAAASATA+SA   S+    ++FS   K+    E    S+    S++ ++
Sbjct: 1  MKKSGIFAASVAAASATAVSASSPSSN---SSFSFSSKMQLSHEEARSSKDQERSSSTEK 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGL+FIETLVTAHR
Sbjct: 61 FAPRFDGLKFIETLVTAHR 76

[Close]

BLAST of Cla002275 vs. NCBI nr
Match: gi|702244837|ref|XP_010051926.1| (PREDICTED: uncharacterized protein LOC104440686 [Eucalyptus grandis])

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-12
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 1   MKKTGLFAASVAAASATALSAPLSSAGFLKTT---FSHQEKLTRDEESTTPSRRSPPSTT 60
           MKK+GLFA S AAASATA+++  SS  F  T+   F +QE ++  E++ +    S  S +
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSSTEQAAS----SQNSGS 110

Query: 61  ADQFAPRFDGLRFIETLVTAHR 80
           AD+FAPRFDGLRFIETLVTAHR
Sbjct: 111 ADKFAPRFDGLRFIETLVTAHR 128

The following BLAST results are available for this feature:

BLAST of Cla002275 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C1_CUCSA	5.4e-30	88.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047970 PE=4 SV=1	[more]
E0CTD2_VITVI	4.1e-14	62.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A067JMU1_JATCU	1.7e-12	54.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25790 PE=4 SV=1	[more]
A0A059DGL2_EUCGR	3.0e-12	56.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1	[more]
A0A061EAV9_THECC	7.3e-11	53.66	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao G...	[more]

BLAST of Cla002275 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188380\|gb\|KGN43613.1\|	7.7e-30	88.61	hypothetical protein Csa_7G047970 [Cucumis sativus]	[more]
gi\|659110624\|ref\|XP_008455325.1\|	2.7e-27	85.00	PREDICTED: uncharacterized protein LOC103495516 [Cucumis melo]	[more]
gi\|225446347\|ref\|XP_002272559.1\|	5.9e-14	62.20	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera]	[more]
gi\|802752590\|ref\|XP_012088290.1\|	2.5e-12	54.43	PREDICTED: uncharacterized protein LOC105646941 [Jatropha curcas]	[more]
gi\|702244837\|ref\|XP_010051926.1\|	4.3e-12	56.10	PREDICTED: uncharacterized protein LOC104440686 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002275	Cla002275.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 1..79 score: 6.6
None	No IPR available	PANTHER	PTHR34683:SF2	SUBFAMILY NOT NAMED	coord: 1..79 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002275	Cla97C07G131270	Watermelon (97103) v2	wmwmbB169
Cla002275	Csa7G047970	Cucumber (Chinese Long) v2	cuwmB584
Cla002275	MELO3C018738	Melon (DHL92) v3.5.1	mewmB226
Cla002275	ClCG07G002930	Watermelon (Charleston Gray)	wcgwmB367
Cla002275	CSPI07G04610	Wild cucumber (PI 183967)	cpiwmB604
Cla002275	CmaCh11G018760	Cucurbita maxima (Rimu)	cmawmB105
Cla002275	CmoCh19G010210	Cucurbita moschata (Rifu)	cmowmB487
Cla002275	Lsi11G015500	Bottle gourd (USVL1VR-Ls)	lsiwmB097
Cla002275	Cp4.1LG15g07990	Cucurbita pepo (Zucchini)	cpewmB259
Cla002275	CsGy7G004200	Cucumber (Gy14) v2	cgybwmB546
Cla002275	MELO3C018738.2	Melon (DHL92) v3.6.1	medwmB221
Cla002275	Carg19121	Silver-seed gourd	carwmB0717
Cla002275	Carg19235	Silver-seed gourd	carwmB0878
Cla002275	CsaV3_7G004410	Cucumber (Chinese Long) v3	cucwmB614
Cla002275	Bhi05G001617	Wax gourd	wgowmB268

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002275	Watermelon (97103) v2	wmwmbB156
Cla002275	Watermelon (97103) v1	wmwmB109
Cla002275	Cucumber (Gy14) v1	cgywmB258
Cla002275	Cucurbita maxima (Rimu)	cmawmB493
Cla002275	Cucurbita moschata (Rifu)	cmowmB094
Cla002275	Watermelon (Charleston Gray)	wcgwmB188
Cla002275	Cucurbita pepo (Zucchini)	cpewmB651