Carg19235 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19235
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_099 : 382069 .. 382454 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAGAAAAAACCACCTCATGCCTATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCGTCGTCCTCCGCCGGCGTCCTCAAAACCACCTTTTCCCATCAGGTAAAATACCCAAATTCTCATTTCAATTCAAAGTTCATATGAAAACAAAATTCTTGGGAATTTCAGGAAAAGGTCATCAGCAGAGATGAAGAAACTAGTCCGTCGAGAATATCGCCGCCGTCGACGGCGCCGGATCAATTCGCTCCGAGATTCGATGGGCTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGATAAGCTTGGGAACTGGCGATAAATGGCCCATGTCTTTTTTTTTTTTCTTTTTC

mRNA sequence

AAAAGAAGAAAAAACCACCTCATGCCTATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCGTCGTCCTCCGCCGGCGTCCTCAAAACCACCTTTTCCCATCAGGAAAAGGTCATCAGCAGAGATGAAGAAACTAGTCCGTCGAGAATATCGCCGCCGTCGACGGCGCCGGATCAATTCGCTCCGAGATTCGATGGGCTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGATAAGCTTGGGAACTGGCGATAAATGGCCCATGTCTTTTTTTTTTTTCTTTTTC

Coding sequence (CDS)

ATGCCTATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCGTCGTCCTCCGCCGGCGTCCTCAAAACCACCTTTTCCCATCAGGAAAAGGTCATCAGCAGAGATGAAGAAACTAGTCCGTCGAGAATATCGCCGCCGTCGACGGCGCCGGATCAATTCGCTCCGAGATTCGATGGGCTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGA

Protein sequence

MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Carg19235 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAP 60
          MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAP
Sbjct: 1  MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAP 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 82
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19235 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-32
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAP 60
          MPMKKTGLFAASVAAASATALSAPSSS GVLKTTFSHQEKVISRDEETSPSRISPPSTA 
Sbjct: 1  MPMKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAA 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 82
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19235 vs. NCBI nr
Match: XP_022969313.1 (uncharacterized protein LOC111468357 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAP 60
          MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVI RDEE+SPSRISPPSTA 
Sbjct: 1  MPMKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAA 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 82
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19235 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_7G047970 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E T+P+R SPPSTA DQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 63 FAPRFDGLRFIETLVTAHR 82
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Carg19235 vs. NCBI nr
Match: XP_002272559.1 (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera] >CBI21847.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVL--KTTFSHQEKVISRDEETSPSRISPPSTAP 62
          MKK+G FAASVAAASATA+SAPSSS  +   K   S  E V  +D E S S+    S++ 
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQ---RSSSA 60

Query: 63 DQFAPRFDGLRFIETLVTAHR 82
          D+FAPRFDGLRFIETLVTAHR
Sbjct: 61 DRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg19235 vs. TAIR10
Match: AT4G28290.1 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 0


Query: 61 DQFAPRFDGLRFIETLVTAHR 82
          ++FAPRFDGLRFIETLVTAHR
Sbjct: 60 EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Carg19235 vs. TrEMBL
Match: tr|A0A0A0K2C1|A0A0A0K2C1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.3e-24
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E T+P+R SPPSTA DQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 63 FAPRFDGLRFIETLVTAHR 82
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Carg19235 vs. TrEMBL
Match: tr|E0CTD2|E0CTD2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVL--KTTFSHQEKVISRDEETSPSRISPPSTAP 62
          MKK+G FAASVAAASATA+SAPSSS  +   K   S  E V  +D E S S+    S++ 
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQ---RSSSA 60

Query: 63 DQFAPRFDGLRFIETLVTAHR 82
          D+FAPRFDGLRFIETLVTAHR
Sbjct: 61 DRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg19235 vs. TrEMBL
Match: tr|V4UE88|V4UE88_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017361mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTF--SHQEKVISRDEETSPSRISPPSTAP 62
          MKK GLFAASVAAASATA+S  S++     + F  SH++    +D E S  R    S++ 
Sbjct: 1  MKKCGLFAASVAAASATAISDSSTTNLACNSNFQASHEDVSSKKDHENSTKR----SSST 60

Query: 63 DQFAPRFDGLRFIETLVTAHR 82
          ++FAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 77

[Close]

BLAST of Carg19235 vs. TrEMBL
Match: tr|A0A2G9G3F2|A0A2G9G3F2_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27644 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62
          M K+GL AASVAAASATA+ A S S   +KT F  ++       +TS +  S  S++PD+
Sbjct: 1  MSKSGLVAASVAAASATAILASSPS---IKTHFPRED---DSSRKTSENSGSQGSSSPDK 60

Query: 63 FAPRFDGLRFIETLVTAHR 82
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 73

[Close]

BLAST of Carg19235 vs. TrEMBL
Match: tr|A0A2H5QH51|A0A2H5QH51_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_229820 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTF--SHQEKVISRDEETSPSRISPPSTAP 62
          MKK GLFAASVAAASATA+S  S++     + F  SH++    +D E S    +  S++ 
Sbjct: 1  MKKCGLFAASVAAASATAISDSSTTNLACNSNFQASHEDVSSKKDHENS----TKGSSST 60

Query: 63 DQFAPRFDGLRFIETLVTAHR 82
          ++FAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 77

The following BLAST results are available for this feature:

BLAST of Carg19235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952670.1	1.0e-33	100.00	uncharacterized protein LOC111455296 [Cucurbita moschata]	[more]
XP_023554654.1	2.5e-32	97.53	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022969313.1	1.3e-31	96.30	uncharacterized protein LOC111468357 [Cucurbita maxima]	[more]
KGN43613.1	1.3e-23	81.01	hypothetical protein Csa_7G047970 [Cucumis sativus]	[more]
XP_002272559.1	3.8e-12	62.96	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera] >CBI21847.3 unn...	[more]

BLAST of Carg19235 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28290.1	3.2e-05	90.48	unknown protein	[more]

BLAST of Carg19235 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19235 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2C1\|A0A0A0K2C1_CUCSA	8.3e-24	81.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
tr\|E0CTD2\|E0CTD2_VITVI	2.5e-12	62.96	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
tr\|V4UE88\|V4UE88_9ROSI	4.0e-10	56.79	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017361mg PE=4 ...	[more]
tr\|A0A2G9G3F2\|A0A2G9G3F2_9LAMI	1.2e-09	58.23	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27644 P...	[more]
tr\|A0A2H5QH51\|A0A2H5QH51_CITUN	2.0e-09	55.56	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_229820 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19235-RA	Carg19235-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..64
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 3..81
None	No IPR available	PANTHER	PTHR34683:SF2	SUBFAMILY NOT NAMED	coord: 3..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19235	Cla002275	Watermelon (97103) v1	carwmB0878
Carg19235	Csa7G047970	Cucumber (Chinese Long) v2	carcuB0891
Carg19235	MELO3C018738	Melon (DHL92) v3.5.1	carmeB0865
Carg19235	ClCG07G002930	Watermelon (Charleston Gray)	carwcgB0855
Carg19235	CSPI07G04610	Wild cucumber (PI 183967)	carcpiB0911
Carg19235	CmaCh11G018760	Cucurbita maxima (Rimu)	carcmaB1211
Carg19235	CmoCh11G019530	Cucurbita moschata (Rifu)	carcmoB1179
Carg19235	CmoCh19G010210	Cucurbita moschata (Rifu)	carcmoB1183
Carg19235	Lsi11G015500	Bottle gourd (USVL1VR-Ls)	carlsiB795
Carg19235	Cp4.1LG15g07990	Cucurbita pepo (Zucchini)	carcpeB1220
Carg19235	CsGy7G004200	Cucumber (Gy14) v2	carcgybB0864
Carg19235	MELO3C018738.2	Melon (DHL92) v3.6.1	carmedB0874
Carg19235	CsaV3_7G004410	Cucumber (Chinese Long) v3	carcucB0915
Carg19235	Cla97C07G131270	Watermelon (97103) v2	carwmbB0918
Carg19235	Bhi05G001617	Wax gourd	carwgoB1021

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19235	Carg19121	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19235	Bottle gourd (USVL1VR-Ls)	carlsiB794
Carg19235	Watermelon (Charleston Gray)	carwcgB0850
Carg19235	Watermelon (97103) v1	carwmB0882
Carg19235	Watermelon (97103) v2	carwmbB0912
Carg19235	Watermelon (97103) v2	carwmbB0913
Carg19235	Wax gourd	carwgoB1025
Carg19235	Silver-seed gourd	carcarB178
Carg19235	Cucumber (Gy14) v1	carcgyB0997
Carg19235	Cucurbita maxima (Rimu)	carcmaB1213
Carg19235	Cucurbita maxima (Rimu)	carcmaB1214
Carg19235	Cucurbita moschata (Rifu)	carcmoB1181
Carg19235	Cucurbita moschata (Rifu)	carcmoB1182
Carg19235	Cucurbita pepo (Zucchini)	carcpeB1218
Carg19235	Cucurbita pepo (Zucchini)	carcpeB1222
Carg19235	Cucurbita pepo (Zucchini)	carcpeB1223