Cla001975 (gene) Watermelon (97103) v1

Overview
NameCla001975
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHarpin-induced protein (AHRD V1 ***- B4FP99_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1
LocationChr9 : 25862035 .. 25862382 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCACCGCCGTTAACCCTAACAAAGTCGGAATCAAGTACGGCGAGTCCCGCTTCACGGTTATGTACCGAGGAATTCCGCTTGGGAGAGCCTCCGTTCCTGGATTCTTTCAAGACCCTCACAGCCAGCGCCAGGTCGATGCTACCATCGCCGTCGATCGCGTTAATCTCCTTCAGGCTGACGCTGCCGATTTGATCCGTGATGCCTCGTTGAACGACCGCGTCGAGCTTAGAATACTCGGCGATGTTGCTGCTAAGATCCGCCTCTTGTCCTTCAATTCCCCCGGCGTTCAGGTACTACTACTCTCTCTACGTCGCCTCTCTGCTTTAGGGATATCCTTGTAA

mRNA sequence

ATGATTTTCACCGCCGTTAACCCTAACAAAGTCGGAATCAAGTACGGCGAGTCCCGCTTCACGGTTATGTACCGAGGAATTCCGCTTGGGAGAGCCTCCGTTCCTGGATTCTTTCAAGACCCTCACAGCCAGCGCCAGGTCGATGCTACCATCGCCGTCGATCGCGTTAATCTCCTTCAGGCTGACGCTGCCGATTTGATCCGTGATGCCTCGTTGAACGACCGCGTCGAGCTTAGAATACTCGGCGATGTTGCTGCTAAGATCCGCCTCTTGTCCTTCAATTCCCCCGGCGTTCAGGTACTACTACTCTCTCTACGTCGCCTCTCTGCTTTAGGGATATCCTTGTAA

Coding sequence (CDS)

ATGATTTTCACCGCCGTTAACCCTAACAAAGTCGGAATCAAGTACGGCGAGTCCCGCTTCACGGTTATGTACCGAGGAATTCCGCTTGGGAGAGCCTCCGTTCCTGGATTCTTTCAAGACCCTCACAGCCAGCGCCAGGTCGATGCTACCATCGCCGTCGATCGCGTTAATCTCCTTCAGGCTGACGCTGCCGATTTGATCCGTGATGCCTCGTTGAACGACCGCGTCGAGCTTAGAATACTCGGCGATGTTGCTGCTAAGATCCGCCTCTTGTCCTTCAATTCCCCCGGCGTTCAGGTACTACTACTCTCTCTACGTCGCCTCTCTGCTTTAGGGATATCCTTGTAA

Protein sequence

MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQVLLLSLRRLSALGISL
Homology
[Close]
BLAST of Cla001975 vs. TrEMBL
Match: A0A0A0K5H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G223380 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           MIFTAVNPNKVGIKY ESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ
Sbjct: 91  MIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 150

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV
Sbjct: 151 ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 190

[Close]
BLAST of Cla001975 vs. TrEMBL
Match: W9RV36_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024155 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.4e-41
Identity = 87/100 (87.00%), Postives = 96/100 (96.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+FTAVNPNKVGIKYGESRF+VMYRGIPLG+ASVPGF+Q+ HS RQV ATIAVDRVNLLQ
Sbjct: 124 MLFTAVNPNKVGIKYGESRFSVMYRGIPLGKASVPGFYQEAHSVRQVVATIAVDRVNLLQ 183

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELR+LGDV AKIR+L+F+SPGVQV
Sbjct: 184 ADAADLIRDASLNDRVELRVLGDVGAKIRVLNFDSPGVQV 223

[Close]
BLAST of Cla001975 vs. TrEMBL
Match: M5Y567_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010161mg PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 86/100 (86.00%), Postives = 96/100 (96.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+F+AVNPNKVGI+YGESRFTVMYRGIPLG+ASVPGFFQD H+ RQV ATI+VDRVNLLQ
Sbjct: 135 MLFSAVNPNKVGIRYGESRFTVMYRGIPLGKASVPGFFQDAHTVRQVVATISVDRVNLLQ 194

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELR+LGDV AKIR+L+F+SPGVQV
Sbjct: 195 ADAADLIRDASLNDRVELRVLGDVGAKIRVLNFDSPGVQV 234

[Close]
BLAST of Cla001975 vs. TrEMBL
Match: A0A061DZ99_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 OS=Theobroma cacao GN=TCM_006430 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+FTAVNPNKVGIKYGESRFTVMYRGIPLG+A+VPGFFQ+ HS R V+ATIAVDR NL+Q
Sbjct: 132 MLFTAVNPNKVGIKYGESRFTVMYRGIPLGKAAVPGFFQEAHSTRNVEATIAVDRANLMQ 191

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELR+LGDV AKIR+L F+SPGVQV
Sbjct: 192 ADAADLIRDASLNDRVELRVLGDVGAKIRVLDFDSPGVQV 231

[Close]
BLAST of Cla001975 vs. TrEMBL
Match: A0A061DYB0_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006430 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+FTAVNPNKVGIKYGESRFTVMYRGIPLG+A+VPGFFQ+ HS R V+ATIAVDR NL+Q
Sbjct: 191 MLFTAVNPNKVGIKYGESRFTVMYRGIPLGKAAVPGFFQEAHSTRNVEATIAVDRANLMQ 250

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQ 100
           ADAADLIRDASLNDRVELR+LGDV AKIR+L F+SPGVQ
Sbjct: 251 ADAADLIRDASLNDRVELRVLGDVGAKIRVLDFDSPGVQ 289

[Close]
BLAST of Cla001975 vs. NCBI nr
Match: gi|659092733|ref|XP_008447190.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 4.1e-48
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           MIFTAVNPNKVGIKY ESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ
Sbjct: 144 MIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 203

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQVLLLS 105
           ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQVLL+S
Sbjct: 204 ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQVLLIS 247

[Close]
BLAST of Cla001975 vs. NCBI nr
Match: gi|449444084|ref|XP_004139805.1| (PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-46
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           MIFTAVNPNKVGIKY ESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ
Sbjct: 91  MIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 150

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV
Sbjct: 151 ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 190

[Close]
BLAST of Cla001975 vs. NCBI nr
Match: gi|659092735|ref|XP_008447191.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-46
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           MIFTAVNPNKVGIKY ESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ
Sbjct: 144 MIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 203

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV
Sbjct: 204 ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 243

[Close]
BLAST of Cla001975 vs. NCBI nr
Match: gi|703127528|ref|XP_010103853.1| (hypothetical protein L484_024155 [Morus notabilis])

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-41
Identity = 87/100 (87.00%), Postives = 96/100 (96.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+FTAVNPNKVGIKYGESRF+VMYRGIPLG+ASVPGF+Q+ HS RQV ATIAVDRVNLLQ
Sbjct: 124 MLFTAVNPNKVGIKYGESRFSVMYRGIPLGKASVPGFYQEAHSVRQVVATIAVDRVNLLQ 183

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELR+LGDV AKIR+L+F+SPGVQV
Sbjct: 184 ADAADLIRDASLNDRVELRVLGDVGAKIRVLNFDSPGVQV 223

[Close]
BLAST of Cla001975 vs. NCBI nr
Match: gi|645223834|ref|XP_008218823.1| (PREDICTED: uncharacterized protein LOC103319102 [Prunus mume])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 86/100 (86.00%), Postives = 96/100 (96.00%), Query Frame = 1 

Query: 1   MIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASVPGFFQDPHSQRQVDATIAVDRVNLLQ 60
           M+F+AVNPNKVGI+YGESRFTVMYRGIPLG+ASVPGFFQD H+ RQV ATI+VDRVNLLQ
Sbjct: 135 MLFSAVNPNKVGIRYGESRFTVMYRGIPLGKASVPGFFQDAHTVRQVVATISVDRVNLLQ 194

Query: 61  ADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV 101
           ADAADLIRDASLNDRVELR+LGDV AKIR+L+F+SPGVQV
Sbjct: 195 ADAADLIRDASLNDRVELRVLGDVGAKIRVLNFDSPGVQV 234

The following BLAST results are available for this feature:
BLAST of Cla001975 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5H7_CUCSA1.2e-4699.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G223380 PE=4 SV=1[more]
W9RV36_9ROSA4.4e-4187.00Uncharacterized protein OS=Morus notabilis GN=L484_024155 PE=4 SV=1[more]
M5Y567_PRUPE7.5e-4186.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010161mg PE=4 SV=1[more]
A0A061DZ99_THECC7.5e-4185.00Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 OS... [more]
A0A061DYB0_THECC2.2e-4084.85Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 2 (F... [more]
BLAST of Cla001975 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092733|ref|XP_008447190.1|4.1e-4898.08PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo][more]
gi|449444084|ref|XP_004139805.1|1.7e-4699.00PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus][more]
gi|659092735|ref|XP_008447191.1|1.7e-4699.00PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo][more]
gi|703127528|ref|XP_010103853.1|6.4e-4187.00hypothetical protein L484_024155 [Morus notabilis][more]
gi|645223834|ref|XP_008218823.1|1.1e-4086.00PREDICTED: uncharacterized protein LOC103319102 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU59215watermelon EST collection version 2.0transcribed_cluster
WMU67245watermelon EST collection version 2.0transcribed_cluster
WMU73087watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001975Cla001975.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU73087WMU73087transcribed_cluster
WMU59215WMU59215transcribed_cluster
WMU67245WMU67245transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 6..88
score: 1.9
NoneNo IPR availablePANTHERPTHR31234FAMILY NOT NAMEDcoord: 1..100
score: 1.4
NoneNo IPR availablePANTHERPTHR31234:SF8EXPRESSED PROTEINcoord: 1..100
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001975Cla97C09G176790Watermelon (97103) v2wmwmbB045
Cla001975ClCG09G014530Watermelon (Charleston Gray)wcgwmB012
Cla001975Lsi03G008920Bottle gourd (USVL1VR-Ls)lsiwmB229
Cla001975Bhi05G000529Wax gourdwgowmB257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001975Wax gourdwgowmB246
Cla001975Cucurbita maxima (Rimu)cmawmB080