WMU67245 (transcribed_cluster) Watermelon (97103) v1

NameWMU67245
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
LocationChr9 : 25862216 .. 25864709 (+)
Sequence length451
The following sequences are available for this feature:

transcribed_cluster sequence

CTGACGCTGCCGATTTGATCCGTGATGCCTCGTTGAACGACCGCGTCGAGCTTAGAATACTCGGCGATGTTGCTGCTAAGATCCGCCTCTTGTCCTTCAATTCCCCCCGGCGTTCAGGTTTCAGTAGATTGTGCAATTGTGATTAGTCCAAGAAAGCAGTCTCTCACATACAAGCAATGTGGTTTTGATGGCTTAAAATGTATGACTCTCATCCCTTCATTCAGCTTCTATCTCTCTCCCCTCTTAGATTCAAAATCATTATTCATTCATTAGTTTCGTCTTTCGATTATTTTCATTTGGTCCCTAACTAATTAATCTAGTCCTTAAGATGAGGATTGAAATGGTTGTGGAATTGGGGATTAAATTGAATTCATCAAAATTTTTTGGGTAAGACGAAATTAGTAAATGGATAACAATTTGTAGAGAGTGTAATTTCTTGAGAGAGATTAGA
BLAST of WMU67245 vs. TAIR10
Match: AT2G01080.1 (AT2G01080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-08
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 1

Query: 106 PGVQVSVDCAIVISPRKQSLTYKQCGFDGL 165
           PGVQVSV+C I ISPRKQ+L YKQCGFDGL
Sbjct: 200 PGVQVSVNCGIGISPRKQALIYKQCGFDGL 229

Query: 166 196
           
Sbjct: 260 229


HSP 2 Score: 54.7 bits (130), Expect = 5.7e-08
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 3

Query: 6   AADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 65
           AADL+RDASLNDRVEL + GDV AKIR+++F+SP
Sbjct: 167 AADLVRDASLNDRVELTVRGDVGAKIRVMNFDSP 200

Query: 66  108
           
Sbjct: 227 200

BLAST of WMU67245 vs. NCBI nr
Match: gi|659092735|ref|XP_008447191.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3

Query: 3   DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 62
           DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP
Sbjct: 205 DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 239

Query: 63  108
           
Sbjct: 265 239

BLAST of WMU67245 vs. NCBI nr
Match: gi|449444084|ref|XP_004139805.1| (PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3

Query: 3   DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 62
           DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP
Sbjct: 152 DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 186

Query: 63  108
           
Sbjct: 212 186

BLAST of WMU67245 vs. NCBI nr
Match: gi|659092733|ref|XP_008447190.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3

Query: 3   DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 62
           DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP
Sbjct: 205 DAADLIRDASLNDRVELRILGDVAAKIRLLSFNSP 239

Query: 63  108
           
Sbjct: 265 239

BLAST of WMU67245 vs. NCBI nr
Match: gi|1012351947|gb|KYP63136.1| (hypothetical protein KK1_017702 [Cajanus cajan])

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query: 106 PGVQVSVDCAIVISPRKQSLTYKQCGFDGL 165
           PGVQVSVDCAIVISPRKQSLTYKQCGFDGL
Sbjct: 114 PGVQVSVDCAIVISPRKQSLTYKQCGFDGL 143

Query: 166 196
           
Sbjct: 174 143

BLAST of WMU67245 vs. NCBI nr
Match: gi|356557519|ref|XP_003547063.1| (PREDICTED: uncharacterized protein LOC100807434 [Glycine max])

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query: 106 PGVQVSVDCAIVISPRKQSLTYKQCGFDGL 165
           PGVQVSVDCAIVISPRKQSLTYKQCGFDGL
Sbjct: 229 PGVQVSVDCAIVISPRKQSLTYKQCGFDGL 258

Query: 166 196
           
Sbjct: 289 258

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT2G01080.12.6e-0883.33 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
Match NameE-valueIdentityDescription
gi|659092735|ref|XP_008447191.1|6.4e-09100.00PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo][more]
gi|449444084|ref|XP_004139805.1|6.4e-09100.00PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus][more]
gi|659092733|ref|XP_008447190.1|6.4e-09100.00PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo][more]
gi|1012351947|gb|KYP63136.1|5.4e-08100.00hypothetical protein KK1_017702 [Cajanus cajan][more]
gi|356557519|ref|XP_003547063.1|5.4e-08100.00PREDICTED: uncharacterized protein LOC100807434 [Glycine max][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla001975Cla001975gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0161263S2_0161263EST