Cla001098 (gene) Watermelon (97103) v1

Overview
NameCla001098
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosomal protein (AHRD V1 **** C6SVL1_SOYBN); contains Interpro domain(s) IPR002143 Ribosomal protein L1
LocationChr1 : 13597037 .. 13598589 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTATTTTTTACAGAATTCTCTTAGTTTTGGATAATTGTTTTGGATTCAGATTCATGCTCGCATTTGGGTTTTACTAGTTACGATGCTTGCGCTCCCTTGATTTCTTTTCTTTGATTCTTCTGTTTTGAGTTTTGTGGTTGCTAGAATATTGGGTTATGAATGATTTAATCTACTGTTCGAGTAATGTGAGCTTTTGAGAAAGTGGATTGATGATCTTTAGGAAGTAAGCATCTTTACTTCGATTCTGCTTTTTTAAGTTTAATGGATTAGAATAATGGGTTTTGAATAGTTTAATCTACTGTTTGAGTAATGTGAACTTATGAGAAAGTGGATTGATGATCTTTAGGAAGTAGGCTTCTTCTTCTTCTTCTTTATTTTTATCCATTCTACTGTTTGAGTTTTATGGTTGCTAGAATAATGGGTTCTGAATGTTTTAATACAATGTTCGAGGTGTGTGAACTTTTGCGAGAGTGGATTGATGATCTTTAGGAATTTGGCTTGTATTCCCGTGCTTCTCCATGAAGTTCAGCGTGATATCGTTTTAGTTTACCTTGTGTGTGTGTGTGGCCTTATTGTCTTCTCATTTCTTTATACAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTAGGGGATGCCTCGCACGTTGAAGAGGTAATTTTACTCACCTCTAGTTACACTATAATGTTAATTGGTGTGAATAAGCTAAATATTATTAGCTGATGATCATTTTGGAGATGGATCATTTGGTGTGAATCAATGCATTGATTTAATTTGATTTTAGGACTACCATATGCCTCTTCTTATCTATAACTTCAGCTTTCCACATGCTTCGAGGATGTCTCTTTAATGGGGTTTCATGAAATAAATTTTAGGCCGAGAAAATTGGCTTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAATAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAAAAATACCATGCCTTTTTGGCATCTGAAGCTATAATCAAGCAGATCCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGTTAGAATATTTTGTGGAGATGTAGTTCTTCTGTTTTTCTTCACCAAATATGATTAATCCTTGTTATGTTTTACATTTATCCTTGTTATGTTCAACTGTCAGTTTGATCTTTGGTTTTTTCATGCTTCAGGAAAGTTCCCAACATTGGTGACACACCAAGAAACGCTTGAATCCAAAGTTAACGAGACCAAGGCAATGGTCAAGTTTCAACTGAAGAAGGTCCTTTGTATGGGAGTTGCCGTTGGAAATGTTGCCATGGATGAGAAGCAAGTCTTCCAGAATGTTCAAATGAGTGTCAATTTCCTGGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTAAGTTAG

mRNA sequence

ATGAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTAGGGGATGCCTCGCACGTTGAAGAGGCCGAGAAAATTGGCTTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAATAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAAAAATACCATGCCTTTTTGGCATCTGAAGCTATAATCAAGCAGATCCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGAAAGTTCCCAACATTGGTGACACACCAAGAAACGCTTGAATCCAAAGTTAACGAGACCAAGGCAATGGTCAAGTTTCAACTGAAGAAGGTCCTTTGTATGGGAGTTGCCGTTGGAAATGTTGCCATGGATGAGAAGCAAGTCTTCCAGAATGTTCAAATGAGTGTCAATTTCCTGGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTAAGTTAG

Coding sequence (CDS)

ATGAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTAGGGGATGCCTCGCACGTTGAAGAGGCCGAGAAAATTGGCTTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAATAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAAAAATACCATGCCTTTTTGGCATCTGAAGCTATAATCAAGCAGATCCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGAAAGTTCCCAACATTGGTGACACACCAAGAAACGCTTGAATCCAAAGTTAACGAGACCAAGGCAATGGTCAAGTTTCAACTGAAGAAGGTCCTTTGTATGGGAGTTGCCGTTGGAAATGTTGCCATGGATGAGAAGCAAGTCTTCCAGAATGTTCAAATGAGTGTCAATTTCCTGGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTAAGTTAG

Protein sequence

MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQNVQMSVNFLVSLLKKNWQNVS
Homology
[Close]
BLAST of Cla001098 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.4e-98
Identity = 177/200 (88.50%), Postives = 189/200 (94.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           N+QMSVNFLVSLLKKNWQNV
Sbjct: 181 NIQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.4e-98
Identity = 177/200 (88.50%), Postives = 189/200 (94.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           N+QMSVNFLVSLLKKNWQNV
Sbjct: 181 NIQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.1e-96
Identity = 177/201 (88.06%), Postives = 189/201 (94.03%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKK-RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REAISSI T   E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQI 120
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE++IKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVF 180
           PRLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNV 201
           QNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNV 201

[Close]
BLAST of Cla001098 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 9.2e-96
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 7.8e-95
Identity = 173/200 (86.50%), Postives = 186/200 (93.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LE+KVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.0e-105
Identity = 196/200 (98.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDASH+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNV+MDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-104
Identity = 195/200 (97.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGN+AM+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TrEMBL
Match: A0A0D2TII7_GOSRA (Ribosomal protein OS=Gossypium raimondii GN=B456_009G085600 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 5.1e-101
Identity = 188/200 (94.00%), Postives = 195/200 (97.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I T S EK+RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVTQSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEKIGLDYMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVAM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TrEMBL
Match: A0A0D2VIP6_GOSRA (Ribosomal protein OS=Gossypium raimondii GN=B456_013G258200 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.7e-101
Identity = 188/201 (93.53%), Postives = 195/201 (97.01%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I  +S EK RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVANSKEKSRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEKIGLDYMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVAM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVS 202
           NVQMSVNFLVSLLKKNWQNVS
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVS 201

[Close]
BLAST of Cla001098 vs. TrEMBL
Match: A0A059D9G4_EUCGR (Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 8.7e-101
Identity = 186/200 (93.00%), Postives = 195/200 (97.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS IF+D NEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMK+CMLGDA HVEEAEKIGL YMDVE LKKLNKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLAYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVA+GN++M+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAIGNLSMEEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQ+SVNFLVSLLKKNWQNV
Sbjct: 181 NVQLSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 351.3 bits (900), Expect = 4.0e-97
Identity = 177/201 (88.06%), Postives = 189/201 (94.03%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKK-RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REAISSI T   E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQI 120
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE++IKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVF 180
           PRLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNV 201
           QNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNV 201

[Close]
BLAST of Cla001098 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 350.9 bits (899), Expect = 5.2e-97
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 347.8 bits (891), Expect = 4.4e-96
Identity = 173/200 (86.50%), Postives = 186/200 (93.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LE+KVNETKA VKFQLKKVLCMGVAVGN++M+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. TAIR10
Match: AT3G58660.1 (AT3G58660.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 51.2 bits (121), Expect = 8.5e-07
Identity = 47/189 (24.87%), Postives = 82/189 (43.39%), Query Frame = 1 

Query: 29  ETIELQIGLKNYDPQKDKRFSGSVKLPH-IPRPKM---KICMLGD------ASHVEEAEK 88
           E + L + LK   PQK +  +  + LPH +  P +   +IC++ D       +  +  +K
Sbjct: 56  ELVYLFVTLKKI-PQKTRTNAYRIPLPHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKK 115

Query: 89  IGLDYMDVEGLKKLNKNKKLVK------KLAKKYHAFLASEAIIKQIPRLLGPGLNKAGK 148
           I  + + +  + KL+K K   K      KL   Y  F     II  +PR++G     + K
Sbjct: 116 IKSENIPITKVIKLSKLKSDYKAFEAKRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKK 175

Query: 149 FPT-LVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQNVQMSVNFLVS 201
            P  L       + ++ +      F ++   C  + VG ++MD  ++ +NV  ++N LV 
Sbjct: 176 IPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVE 235

[Close]
BLAST of Cla001098 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 2.9e-105
Identity = 196/200 (98.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDASH+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNV+MDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. NCBI nr
Match: gi|659071695|ref|XP_008461453.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-104
Identity = 195/200 (97.50%), Postives = 199/200 (99.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDASH+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKA VKFQLKKVLCMGVAVGNV+MDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKATVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 386.3 bits (991), Expect = 3.2e-104
Identity = 195/200 (97.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGN+AM+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. NCBI nr
Match: gi|823220803|ref|XP_012443106.1| (PREDICTED: 60S ribosomal protein L10a-3 [Gossypium raimondii])

HSP 1 Score: 375.2 bits (962), Expect = 7.3e-101
Identity = 188/200 (94.00%), Postives = 195/200 (97.50%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I T S EK+RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVTQSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEKIGLDYMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVAM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNV 201
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]
BLAST of Cla001098 vs. NCBI nr
Match: gi|823220787|ref|XP_012443098.1| (PREDICTED: 60S ribosomal protein L10a isoform X1 [Gossypium raimondii])

HSP 1 Score: 374.8 bits (961), Expect = 9.5e-101
Identity = 188/201 (93.53%), Postives = 195/201 (97.01%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I   S EK+RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVAQSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
           KMKICMLGDA HVEEAEKIGLDYMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVAMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVAM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVS 202
           NVQMSVNFLVSLLKKNWQNVS
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVS 201

The following BLAST results are available for this feature:
BLAST of Cla001098 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R10A_ORYSJ4.4e-9888.5060S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1[more]
R10A_ORYSI4.4e-9888.5060S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1[more]
R10A3_ARATH7.1e-9688.0660S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1[more]
R10A1_ARATH9.2e-9687.5060S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1[more]
R10A2_ARATH7.8e-9586.5060S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1[more]
BLAST of Cla001098 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE6_CUCSA2.0e-10598.00Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1[more]
A0A0A0KEW8_CUCSA2.2e-10497.50Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1[more]
A0A0D2TII7_GOSRA5.1e-10194.00Ribosomal protein OS=Gossypium raimondii GN=B456_009G085600 PE=3 SV=1[more]
A0A0D2VIP6_GOSRA6.7e-10193.53Ribosomal protein OS=Gossypium raimondii GN=B456_013G258200 PE=3 SV=1[more]
A0A059D9G4_EUCGR8.7e-10193.00Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1[more]
BLAST of Cla001098 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22440.14.0e-9788.06 Ribosomal protein L1p/L10e family[more]
AT1G08360.15.2e-9787.50 Ribosomal protein L1p/L10e family[more]
AT2G27530.14.4e-9686.50 Ribosomal protein L1p/L10e family[more]
AT3G58660.18.5e-0724.87 Ribosomal protein L1p/L10e family[more]
BLAST of Cla001098 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443440|ref|XP_004139485.1|2.9e-10598.00PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus][more]
gi|659071695|ref|XP_008461453.1|1.4e-10497.50PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo][more]
gi|659117410|ref|XP_008458587.1|3.2e-10497.50PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo][more]
gi|823220803|ref|XP_012443106.1|7.3e-10194.00PREDICTED: 60S ribosomal protein L10a-3 [Gossypium raimondii][more]
gi|823220787|ref|XP_012443098.1|9.5e-10193.53PREDICTED: 60S ribosomal protein L10a isoform X1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002143Ribosomal_L1
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016095Ribosomal_L1_3-a/b-sand
IPR023673Ribosomal_L1_CS
IPR023674Ribosomal_L1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
biological_process GO:0000470 maturation of LSU-rRNA
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU07584watermelon EST collection version 2.0transcribed_cluster
WMU32635watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU48367watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001098Cla001098.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU32635WMU32635transcribed_cluster
WMU48367WMU48367transcribed_cluster
WMU07584WMU07584transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002143Ribosomal protein L1PIRPIRSF002155RPL1p_RPL1a_RPL10e_RPL1ocoord: 1..201
score: 1.0
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3DG3DSA:3.30.190.20coord: 6..60
score: 5.2E-40coord: 152..200
score: 5.2
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3DG3DSA:3.40.50.790coord: 62..151
score: 2.4
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 116..135
scor
IPR023674Ribosomal protein L1-likeunknownSSF56808Ribosomal protein L1coord: 21..200
score: 4.06
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 1..199
score: 7.4E
NoneNo IPR availablePANTHERPTHR23105:SF55SUBFAMILY NOT NAMEDcoord: 1..199
score: 7.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001098Cla97C01G011580Watermelon (97103) v2wmwmbB243
Cla001098ClCG01G012240Watermelon (Charleston Gray)wcgwmB149
Cla001098CmoCh18G006640Cucurbita moschata (Rifu)cmowmB382
Cla001098Cp4.1LG09g05610Cucurbita pepo (Zucchini)cpewmB045
Cla001098CsGy1G014580Cucumber (Gy14) v2cgybwmB060
Cla001098Carg26274Silver-seed gourdcarwmB0000
Cla001098Bhi08G000049Wax gourdwgowmB506
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001098Cucurbita pepo (Zucchini)cpewmB518