Cla001020 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001020
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ras-related protein Rab-18 (AHRD V1 ***- B6UBP4_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type
Location	Chr8 : 11853693 .. 11857508 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTACTCCCAATCTCTCTCATCCCTTACAAAATTAAGGGATTTAGTTTCATTGTTTGTGTTGCATTATGCTTCTTCTAGTAGGTTTCCTTTGGTGTTTAGTTGATTGTTATCCATTAACTTCACTTTAATAGACAAAGTAAGGGAGTCGGAAGTATTTATTGGATTGAGGAAAGTTGAGGCGATTTGTGGAATTGACTTTATTCTGATTAGTTGTTTAAAGGGGGTATTTGTGTTTATTGTCATCTATAGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGGTAATGAATTGAATGTGATGGATCTCTGTTTTACATTTTTTTTTTAATGATTTCTATTTTGGAGTTGAACATTGAATTTTTGGATCGTTTTGAAGTTTTAAATATAGGCCAAAACATATTTTCAGTTCATCTGTCTTTCTTAACTATTTTGTCTCTATACTTGACAAATATTAGGATCGAACATCTGGGGTTACATATATTTTTGGGATCTAGGCATTTTGATAGATAGGTAACTGAATCACTTTTAATTTTTGATAAGTTATTTTCTATGAAAAAATGAAATTTCATTGTGATACTTTTTGAAAGGGCTAAATAATATATTGTAATAGAAAATTATTATAAATAGAAAAAATATCAAACTATTTACCAATATAGCAAAATTTTATTTTCTATATGTGATAGACTACGATAGACCCACATGTCTATCTGGGTCTATCGTCGTCTATCACAGATAGAAATTAAAATTTTGCTATATTTGTAATTATTTTCAACCGTCTTTTTATTTTTGAAAATATCCCTATTTTAATAGATTGTGAGCAGGGAGGAAAAGGTTTCCTTTATTTATTATTATTATTTCCTAGAAGAAGGTAACTGGAGCAGTGGGATTTTGACTCTTGGAGGAATTTTGCAACCAACTGTCGTTGCCAGTTGGGAACCGCTTTTTGGTCTTTGATCTGTTAATTTAAGTTGCAAGTACACTTTCTTGCCCTTAATGACTTAATTACTGGAGATATTTGTGTTCTCCATGGATGTAAAGCTTGCTTGACTATAAATATAAACTACAAAACTATTCTCTCAAAAGACGGATGACTTTCTAAAGCATTTAAATTGTCTATTCAAAATTTTTTGGAAGAATTGAACTAATAATTTAATTTTACTTAAAGAAAGGTGGCTGACTTTCTAAAGATTTAACATGGTGCAGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGGTAAGCTATCAAATGGCACTCTTCTGCTTTGACTTAAATGCATTCTGTGATTTACTGTCAGCTCTCGAGTCCATTGAATGTGCTAAACATATCAAACGATGTTATTAATGAAGCTTAGTTTCTTTGGAAAGTGCTAGTAGTGTTTTGATTGAGCCTGATAATACCATTGAATTAGGAGAAGGATGTCAAAATATAGTTCGTTATTTTTCTTCTTGTGCTCGAATCCTCTTTTGCAATTAACTGAAGTGGAAACTCTGTATTGATTCCTTTTGTTGAATTCTCCCTGAACAAGTTCTTTCAGCCATTTGATGAGCACTCATGGAGGCACTGAAGTTGCACAGTCTAGCTTGACATACTGCTTTTCTGAAGTTGCTTGATTAGGAATTGAAATATCTGATTGATTGGTTTTTTATTTTTTTCTTTTTTTCTTTTTTTTGGGGGGGGGGGGGGGGATAGAACTTTACTTTTTATGTTTTATTTTACCTTTTCCTTTCTTTTCCATTTCCTCTTCTTATAGCAGTGTACATTATTACTAATTGAATCAAAGCGGAGCACATCAAATTCTCTTCAAATTCTAGAGTGACAGTTAGTTGTCAAATATGTTAGTTCTCGTCAGATTCTTTAGATCCTAAAGTATGAGCTCATGAAGAATTCTAGGGTGGCACTTTTTCATACTACACTATCTTTGGTCTACTGACATTGTATTTTCGTTTGTCTTAGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGTGAGTCCTTTGTATCTCTTAAGTCTTACCACACTCGTAGTCAATCCAGTTTATAAATGTATTAACTAGAGTTTCTACATTAATAATGGATGAAAAATGATGGATCAGACACTAATGATTTTGGCCAAAATTGCATGATAATCTGATACGATTTCAGACCATTTAATATAGACGACGTTTTGTTTTGTTATTTCCCCTCCCTGCAATAATCTGCAAAGTAGAAATAATCTATACTGCAGATTTAAGGTCCATCTAAAAGAAAAATGTCAGTGCACACAATTTTTCATTTTTATGTGTTGCAATAATCTTAGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGGTACTTTTTAACGCGACAGTTATCATCTAATTACATTAGAAAGAAACCCGATGACATTTACTGGTGAATGTGATAAGTAGAGACATAGCAGACTAGCTGGTGGTGGATGCAGAAAATAGTTTTAAAAGTTGAGTTTGAAAATGGTTGCTTCATTCTTCCTTTTTAATATTACAAATGCGTAACTGTTTAACGAAACTTTTAGCCAATAATAATAGCAATCAGTTCTAGGGGCGGAGCCACAGGGAGGGGCAAGATTCTGTATTTTACTTCTTGATACGTATAATTTTTCAGTTATGAGCAATTAGGAGGGTGGATATAAGTGAAAATGCGTAAAAATGTTAAGGTTGCGGAAGAACTACCTTTTTAGTCCTTAAGTCATCAATAATAGGTACATTTAGTCCCAAAAGTTTCAAAATATACCCTCCTAATCCCTGAGTTTTTAAGAATAAGCTTAAATGGACCTATTTTATTTTTATTATTTTTAAGGTTGAGATGATATTTTTAAATTAAAAAGAATGATTACAAAATTATCTCTCTTCTCTCCTTCTCCTGCCACCCTCTTCCATTTTCTTATTTAATTATTGTTTCTTTGGTAAAATAACAATAATAAAAATATAAGAAACGTTTTAAGCTTATTCTTAAAAATTTAGGGACTAAAAAGGGTATATTTTAAAATCTTAGGACCCGTTTCTAACTCAGGTACTAAAAAGATAATTTTCCCTAATTTTTTTTATATAATTTTCTCGGTTTAAGACAAGGCAAGAGGGTGCAATTTCCCTCTCCCCTTCCTTCTTTGCTCCTTGGCTCCGCCGTTGATCAATTCTAGATAGCAATTTCGAATGCTTTTCTCTGTAGAAAATTTCGCAAGCAGCACGTTTAGAATTGTCTTCATGTAAAGGGATCTCCCAAGAATCTGAGATATGAAACTATTGTTTAGAAACTTCCCATATGCAAATGTTGTTTGTAATTGTTGTGCAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG

mRNA sequence

ATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG

Coding sequence (CDS)

ATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG

Protein sequence

MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLEERSTVVKRNILRQKQEGQAQQSGGCCS

Homology

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BLAST of Cla001020 vs. Swiss-Prot
Match: RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.9e-89
Identity = 163/211 (77.25%), Postives = 184/211 (87.20%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL+DVW  E+ELY T+Q+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CV+MLVGNKVD+ESER VSRE+GIALA +L  +FLECSA+TR+NVE+CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKRNIL+QK E Q     GCCS
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

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BLAST of Cla001020 vs. Swiss-Prot
Match: RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.3e-78
Identity = 151/211 (71.56%), Postives = 174/211 (82.46%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY T+ D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKR     K + +A Q G CCS
Sbjct: 181 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

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BLAST of Cla001020 vs. Swiss-Prot
Match: RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-74
Identity = 143/212 (67.45%), Postives = 167/212 (78.77%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q   +D  FKVLLIGDSGVGKSSLL +F S + D L+PTIGVDFK+K LTIG K
Sbjct: 1   MGSSSGQPE-FDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           +LKL IWDTAGQERFR+LTSSYYRG QGII+VYDVTRR+TFTNL D+WA E++LY T+QD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVDKESERAVS+++GI  A + G LFLECSAKTR NVE+CFEEL +KI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SFLEERSTVVKRNILRQK-QEGQAQQSGGCCS 212
           S   E S+  K+NI +Q   +  +  S  CCS
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

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BLAST of Cla001020 vs. Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-49
Identity = 108/200 (54.00%), Postives = 135/200 (67.50%), Query Frame = 1


Query: 14  SFKVLLIGDSGVGKSSLLHTFISASLD-HLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQ 73
           + K+L+IG+SGVGKSSLL  F   + D  L  TIGVDFK+K + I G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 74  ERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLVGNKVDK 133
           ERFR+LT SYYRG QG+ILVYDVT+R+TFT  L+ W +E+E Y T  D VKMLVGNK+DK
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTK-LENWLNELETYCTRNDLVKMLVGNKIDK 127

Query: 134 ESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLEERSTVVKR 193
           ++ R V R +G+  A K   LF+E SAKTR+ V+  FEEL  KI++ P   E  S++   
Sbjct: 128 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE--SSIQNH 187

Query: 194 NILRQKQEGQAQQS-GGCCS 212
            +     E Q Q + GG CS
Sbjct: 188 GVQLSDNEPQRQGACGGYCS 203

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BLAST of Cla001020 vs. Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.9e-49
Identity = 100/178 (56.18%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 8   INAYDLSFKVLLIGDSGVGKSSLLHTFISASLDH-LTPTIGVDFKIKQLTIGGKRLKLTI 67
           ++++D +FKVLL+GDSGVGKS +L  F S   +   T TIGVDFK+K LT  GKR KLTI
Sbjct: 3   VDSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTI 62

Query: 68  WDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLV 127
           WDTAGQERFR+LTSSYYRG QGII VYDVTRR+TF +L   W  E ++Y T +  +KM+V
Sbjct: 63  WDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVV 122

Query: 128 GNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLE 185
            NKVD  ++R VS E+G   A + G LF+E SA+    V + FEEL +KI++ P  LE
Sbjct: 123 ANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180

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BLAST of Cla001020 vs. TrEMBL
Match: A0A0A0KAL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016920 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 9.1e-101
Identity = 191/211 (90.52%), Postives = 198/211 (93.84%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+ GK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKRNILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRNILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Cla001020 vs. TrEMBL
Match: W9RGG6_9ROSA (Ras-related protein RABC2a OS=Morus notabilis GN=L484_022582 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.5e-90
Identity = 169/210 (80.48%), Postives = 188/210 (89.52%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q N+YDLSFK+LLIGDSGVGKSSLL +FISAS D L PTIGVDFKIK LT+GGK
Sbjct: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISASTDDLAPTIGVDFKIKLLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           +LKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL DVWA EVELY+T++D
Sbjct: 61  KLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYMTNKD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CV+MLVGNKVD+ESERAVSRE+G+ALA +LGSLFLECSAKTRENVE+CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERAVSREEGMALAKELGSLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCC 211
           S LEE S  VKRNI++QK + QA   G CC
Sbjct: 181 SLLEEGSNAVKRNIIKQKPDHQAPPGGACC 210

[Close]

BLAST of Cla001020 vs. TrEMBL
Match: V4SM34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012751mg PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-90
Identity = 170/211 (80.57%), Postives = 189/211 (89.57%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q N+YDLSFK+LLIGDSGVGKSSLL +FIS+S+D L+PTIGVDFKIK LT+ GK
Sbjct: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL DVWA EV+LY T+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD++SER VSRE+GIALA + GSLFLECSAKTRENVE+CFE+LA+KIMEVP
Sbjct: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S VVKRNIL+QK E Q+   GGCCS
Sbjct: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211

[Close]

BLAST of Cla001020 vs. TrEMBL
Match: A0A067DLS1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028300mg PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-90
Identity = 170/211 (80.57%), Postives = 189/211 (89.57%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q N+YDLSFK+LLIGDSGVGKSSLL +FIS+S+D L+PTIGVDFKIK LT+ GK
Sbjct: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL DVWA EV+LY T+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD++SER VSRE+GIALA + GSLFLECSAKTRENVE+CFE+LA+KIMEVP
Sbjct: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S VVKRNIL+QK E Q+   GGCCS
Sbjct: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211

[Close]

BLAST of Cla001020 vs. TrEMBL
Match: D7TIU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04740 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.8e-89
Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q ++YDLSFK+LLIGDS VGKSSLL +FIS+S++ L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQSSSYDLSFKILLIGDSAVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRE+FTNL DVWA EVELY T+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFTNLSDVWAKEVELYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSRE+GIALA + G LF ECSAKTRENVEKCFEELA+KIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREEGIALAKEHGCLFFECSAKTRENVEKCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE STV KRNIL+ K E Q   +GGCCS
Sbjct: 181 SLLEEGSTVGKRNILKPKPENQPPPTGGCCS 211

[Close]

BLAST of Cla001020 vs. NCBI nr
Match: gi|659126228|ref|XP_008463077.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKR+ILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Cla001020 vs. NCBI nr
Match: gi|449441211|ref|XP_004138376.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 1.3e-100
Identity = 191/211 (90.52%), Postives = 198/211 (93.84%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+ GK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKRNILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRNILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Cla001020 vs. NCBI nr
Match: gi|1009175632|ref|XP_015868992.1| (PREDICTED: ras-related protein RABC2a-like [Ziziphus jujuba])

HSP 1 Score: 342.0 bits (876), Expect = 7.2e-91
Identity = 170/211 (80.57%), Postives = 192/211 (91.00%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q ++YDLSFK+LLIGDSGVGKSSLL +FIS ++D+L PTIGVDFKIKQL++G K
Sbjct: 1   MGSSSGQSSSYDLSFKILLIGDSGVGKSSLLVSFISNTVDNLAPTIGVDFKIKQLSVGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRR+TFTNL DVWA EVELY T+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSDVWAKEVELYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVK+LVGNKVD++SERAV+RE+GIALA +LGSLFLECSAKTRENVE+CFEELA+KIMEVP
Sbjct: 121 CVKILVGNKVDRDSERAVTREEGIALAKELGSLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE ST VKRNI++QKQE QA   GGCCS
Sbjct: 181 SLLEEGSTAVKRNIIKQKQEFQAPPGGGCCS 211

[Close]

BLAST of Cla001020 vs. NCBI nr
Match: gi|703107716|ref|XP_010098817.1| (Ras-related protein RABC2a [Morus notabilis])

HSP 1 Score: 340.5 bits (872), Expect = 2.1e-90
Identity = 169/210 (80.48%), Postives = 188/210 (89.52%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q N+YDLSFK+LLIGDSGVGKSSLL +FISAS D L PTIGVDFKIK LT+GGK
Sbjct: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISASTDDLAPTIGVDFKIKLLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           +LKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL DVWA EVELY+T++D
Sbjct: 61  KLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYMTNKD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CV+MLVGNKVD+ESERAVSRE+G+ALA +LGSLFLECSAKTRENVE+CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERAVSREEGMALAKELGSLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCC 211
           S LEE S  VKRNI++QK + QA   G CC
Sbjct: 181 SLLEEGSNAVKRNIIKQKPDHQAPPGGACC 210

[Close]

BLAST of Cla001020 vs. NCBI nr
Match: gi|567871755|ref|XP_006428467.1| (hypothetical protein CICLE_v10012751mg [Citrus clementina])

HSP 1 Score: 340.1 bits (871), Expect = 2.7e-90
Identity = 170/211 (80.57%), Postives = 189/211 (89.57%), Query Frame = 1


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q N+YDLSFK+LLIGDSGVGKSSLL +FIS+S+D L+PTIGVDFKIK LT+ GK
Sbjct: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL DVWA EV+LY T+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD++SER VSRE+GIALA + GSLFLECSAKTRENVE+CFE+LA+KIMEVP
Sbjct: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S VVKRNIL+QK E Q+   GGCCS
Sbjct: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211

The following BLAST results are available for this feature:

BLAST of Cla001020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAC2A_ARATH	3.9e-89	77.25	Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1	[more]
RAC2B_ARATH	5.3e-78	71.56	Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1	[more]
RABC1_ARATH	1.6e-74	67.45	Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1	[more]
RB18B_DANRE	1.8e-49	54.00	Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1	[more]
YPTV3_VOLCA	8.9e-49	56.18	GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1	[more]

BLAST of Cla001020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAL0_CUCSA	9.1e-101	90.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016920 PE=4 SV=1	[more]
W9RGG6_9ROSA	1.5e-90	80.48	Ras-related protein RABC2a OS=Morus notabilis GN=L484_022582 PE=4 SV=1	[more]
V4SM34_9ROSI	1.9e-90	80.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012751mg PE=4 SV=1	[more]
A0A067DLS1_CITSI	1.9e-90	80.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028300mg PE=4 SV=1	[more]
D7TIU1_VITVI	2.8e-89	80.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04740 PE=4 SV=...	[more]

BLAST of Cla001020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126228\|ref\|XP_008463077.1\|	1.0e-100	90.52	PREDICTED: ras-related protein RABC2a-like [Cucumis melo]	[more]
gi\|449441211\|ref\|XP_004138376.1\|	1.3e-100	90.52	PREDICTED: ras-related protein RABC2a-like [Cucumis sativus]	[more]
gi\|1009175632\|ref\|XP_015868992.1\|	7.2e-91	80.57	PREDICTED: ras-related protein RABC2a-like [Ziziphus jujuba]	[more]
gi\|703107716\|ref\|XP_010098817.1\|	2.1e-90	80.48	Ras-related protein RABC2a [Morus notabilis]	[more]
gi\|567871755\|ref\|XP_006428467.1\|	2.7e-90	80.57	hypothetical protein CICLE_v10012751mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008150	biological_process
biological_process	GO:0032482	Rab protein signal transduction
cellular_component	GO:0016020	membrane
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0030742	GTP-dependent protein binding
molecular_function	GO:0080115	myosin XI tail binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14711	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU31178	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU72987	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001020	Cla001020.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31178	WMU31178	transcribed_cluster
WMU72987	WMU72987	transcribed_cluster
WMU14711	WMU14711	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 16..177 score: 7.8
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 15..171 score: 1.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 10..210 score: 1.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..197 score: 7.58
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 55..77 score: 4.6E-36coord: 154..176 score: 4.6E-36coord: 119..132 score: 4.6E-36coord: 37..53 score: 4.6E-36coord: 15..36 score: 4.6
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 7..211 score: 4.5E
None	No IPR available	PANTHER	PTHR24073:SF536	RAS-RELATED PROTEIN RABC2A	coord: 7..211 score: 4.5E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..179 score: 1.0
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 17..180 score: 1.9
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..179 score: 6.4
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..211 score: 3.
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..180 score: 0.
None	No IPR available	PROFILE	PS51419	RAB	coord: 10..211 score: 31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001020	Cla97C08G146400	Watermelon (97103) v2	wmwmbB108
Cla001020	Csa6G016920	Cucumber (Chinese Long) v2	cuwmB475
Cla001020	MELO3C011704	Melon (DHL92) v3.5.1	mewmB305
Cla001020	MELO3C025015	Melon (DHL92) v3.5.1	mewmB312
Cla001020	ClCG08G002380	Watermelon (Charleston Gray)	wcgwmB410
Cla001020	CSPI06G02490	Wild cucumber (PI 183967)	cpiwmB490
Cla001020	Cucsa.365960	Cucumber (Gy14) v1	cgywmB656
Cla001020	Lsi08G002830	Bottle gourd (USVL1VR-Ls)	lsiwmB470
Cla001020	Lsi08G002190	Bottle gourd (USVL1VR-Ls)	lsiwmB478
Cla001020	CsGy6G002540	Cucumber (Gy14) v2	cgybwmB446
Cla001020	MELO3C025015.2	Melon (DHL92) v3.6.1	medwmB299
Cla001020	CsaV3_6G002680	Cucumber (Chinese Long) v3	cucwmB501
Cla001020	Bhi04G001774	Wax gourd	wgowmB306

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None