ClCG11G004890 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G004890
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_3
Location	CG_Chr11 : 5195037 .. 5198102 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAACCCTAAATTCTTAGTCTTCCCTTCCTCCTCTCGAGCAGTGAGCAACTCGCATCCCTCACCACCGTGTCTCAGCTCGCCGTCGACCACACCTCAAGTCGAAGCTCTCCTTTCCGCCGGTCAGTTTCAATTTCCAAGCTCTCTGTCTCTGTTAATTTATTTTTTCTTTTCTTTTTCACTCTCCATTGAAATTTCCTTTAGTTTTGGGAGATTATGGTGGTGGTGAACGTGAAAATGCTGTTGATGTTATTAATTTGGTTTAAAAATAAATAAATAAAACCCTAGCTATTTTCCCACCTTCTTCTTTCTTCTCCCTTCCAACTTCGGTGCAGCCCAATATCTGAAGTCTAGTATTTGCAAACAGTAGAAGAAGACGAGCGAAGAATTAGTTAATCGAAGTTGCAGAGCAGCAAGGCAAAGCTCTCAACGCCTCAGAATGAGCAGCAAGCAGGGCCCTCCGAAGCACCAAAACAGATACGCTTGGAAACCCAACGCCGGCCGGAAAATCAACGAAACGGTACTCTGATTTCACCATCTTTCTTTTTTCTTTTCCGTAATCTAAATGTTAACCTCCTTTTTACTTCGAAAATTTTAGCACAGGAGGTTGGAGGTAGATTCCGCCCCTTTTCTGACATCACCGGAGTTTGTCTCCGCTGCAAGGATCAAATTGATTGGAAACGCCGTTACGGAAAGTACAAACCCCTTTCCGAACCTGCCAAATGGTATGCTCCTTTTGCTTTTTCTTCCATTTTTAATTTGTTTCTCTTTCTGATGATGTTGGATTGGTAAATTTGTGTTGAATGTACTGCAGTCAATTGTGTTCCAAGCGGAATGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTTAGTTTAAATTATCAGTAGCTCGCATGTATATGTGAATTCAATTTCTCTTGTTCTGAAGAAATAAATTTCTAGGGGAAAATATGTGATTATGAACAAAGTTCAGCAGTAAAAGCTAAGAGTAACTTTAATATTTATATAGGCTGTGCCAAGGAGCAAGGTGTATGCGCAAAGTGTCGTTGTCGTGTAGATCAAACTGTTGGAAGGTGTGTTTTATATTCATTGCTGAAGATTAATGTGTGAATCTTGTGTTCTAGGAATAAAGAATGAAATTCTAAAAGAAAATGATCTTGTAAGGAGGAATATATTGTGTTACTGTTACAAAAGTTGCGATATGCAAGATGTCATTGGATGATAAGTTTTTGAAATTCTAAGGCCTTTCCATCTGCCCTTTCTAGGGATTTGTCTGAAGTGGAGGCTGAGCAAAAGATGCTTCAAGAGGTATGATTTGCCCTCATGTCATGGTGATAAATATTCAGATGTAGCTTACAGGTTTGGTGATTGCTGCAGGCCATAAAGAATGCTCGAGAAAGGGATCGCAGAACTCTATTACGTGCTGTAAGCTTCTGTTCTTTGTTCTTGTTTATTTTATTTATTTACTTATTATTTTGTTTATTTGTATATTGAATGAAACTATGAAAGGTATTTCGCGAATAAAATAGAATTTTGGAAGTTATAGAGCATTTGTCTAGTACTTTAGAATTCAGAGCATTATGTTTACGTTTTTGCGTCAATTGTTTTCTGTTTGGGGAATTCATTTTTCAACATTACCTACACCTAGCGTTGTTTTTCTGGGTTGATGCGAGGTCTCAATGTAAAGAGCAACAAGCATTTCCATTTCAAGAGTTAGTCATATTTCGTAAATCAGTTTAACCTTAGAAGTTGGGTGAGTTGTGTTGGTTGTAAATAAGCTAAGGAGTAATTACAAAAAGCTCTATGTTGAGCGCATGTTGAGTGCTCCAACTAGAGGTTGTAAGCTACACAATTTCACTAAAAGAATAAAGAGAAGAGGACTTATGAAGGAAAATCCTCAAGTTTCTTTCTGTTCCAAAGGATCTATGGAATGACTCTAATGATGTTTCTCCATAAAACTTTAGTCTTCTCCTTCAAAGGCCAACCCATGAGAGCTTAATCCATTGACAATCGCATAGAGCCCAACAAGCACCCGAAGACCAAAAATCATCCTAAAGCAACTCTAGACTTGAGTAGTGCATTCAGAATGCAGAGCAATGGTTGGTAGATTCACAACTTTTGCAGCACATAACACACATAGTAGGGGAGCAACACAAGGTAGGGAATCTTCTTCGAACCAAACCCCATTGTATTGATACTATTTAGTGCCAACCCAAATCTGTAAGCAAAGGTCTTCATTAGCCATTCTTATTTTCTGAAGAACAACTTCCATAGCTGTTTTGATAGAAAACAATCTAGAACCATCCAACTTTCGTACCAGCATGTCTCGAAGCTAATTGAGCCCTTTGGAAGGAGCTTATGGTGTAGTTTTCCTCTGGGGAGGGTTTTCTCTACCCTGGCGCTTAGGACGTTTTTGTTTTCTTTTGGAATATATTCCTTTTTGTTTCCTATAAAAAAAAAAGCTCTTTCGTCTAAATTCTATGATGGTTTCCCTTGAAGTGTTGAGCTCTATTACATCAGGTCATAGTAAGTATGTGTTGCATTCCAACCATAGGAATTGAATCTTTAGTGACCATGGTTGTGAAATTTCTACACCAGCTGATTAACGAAATGATCGTACTGTATGTTATTTCCTGCTTGATTCATGATTTAAATTTCTTTCATTGAAACAGATGGAGAAGGGGAAAAGTAAGAGTTCAAATAAAAACAAATCAGCAGTTGAAGAAGAAACTAAGGTTAAGGATTCAATCCATTCATCAACTAATGAGAAAGCTGAATTAGGCAGAAATGAGGATGACGATGAAATTACCGATGACACAGATGACGATAATTACGAAGACGAAGATGAATGTGAAAATGAAGAAAATGACGATAGAGAGGAAGATAAAGAGTAGGTAAATTAATCCTGGTTAGGGGCATGTTTTACCCAAAGTTGATTTGTGGTATGAGTCGTATGATGATGCTAACTTCACCATAGAAGTTGTAATACCAATTTTCTTTTCAAGAAGTTAAATTTTGATGAGTTCATGTGTTTGGTTCTTTGGGGTACTTCAATTATTGTGTAATA

mRNA sequence

CCAAACCCTAAATTCTTAGTCTTCCCTTCCTCCTCTCGAGCAGTGAGCAACTCGCATCCCTCACCACCGTGTCTCAGCTCGCCGTCGACCACACCTCAAGTCGAAGCTCTCCTTTCCGCCGCCCAATATCTGAAGTCTAGTATTTGCAAACAGTAGAAGAAGACGAGCGAAGAATTAGTTAATCGAAGTTGCAGAGCAGCAAGGCAAAGCTCTCAACGCCTCAGAATGAGCAGCAAGCAGGGCCCTCCGAAGCACCAAAACAGATACGCTTGGAAACCCAACGCCGGCCGGAAAATCAACGAAACGGAGGTTGGAGGTAGATTCCGCCCCTTTTCTGACATCACCGGAGTTTGTCTCCGCTGCAAGGATCAAATTGATTGGAAACGCCGTTACGGAAAGTACAAACCCCTTTCCGAACCTGCCAAATGGTATGCTCCTTTTGCTTTTTCTTCCATTTTTAATTTGTTTCTCTTTCTGATGATGTTGGATTGGTAAATTTGTGTTGAATGTACTGCAGTCAATTGTGTTCCAAGCGGAATGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTTAGTTTAAATTATCAGCTGTGCCAAGGAGCAAGGTGTATGCGCAAAGTGTCGTTGTCGTGTAGATCAAACTGTTGGAAGATGGAGAAGGGGAAAAGTAAGAGTTCAAATAAAAACAAATCAGCAGTTGAAGAAGAAACTAAGGTTAAGGATTCAATCCATTCATCAACTAATGAGAAAGCTGAATTAGGCAGAAATGAGGATGACGATGAAATTACCGATGACACAGATGACGATAATTACGAAGACGAAGATGAATGTGAAAATGAAGAAAATGACGATAGAGAGGAAGATAAAGAGTAGGTAAATTAATCCTGGTTAGGGGCATGTTTTACCCAAAGTTGATTTGTGGTATGAGTCGTATGATGATGCTAACTTCACCATAGAAGTTGTAATACCAATTTTCTTTTCAAGAAGTTAAATTTTGATGAGTTCATGTGTTTGGTTCTTTGGGGTACTTCAATTATTGTGTAATA

Coding sequence (CDS)

ATGAGCAGCAAGCAGGGCCCTCCGAAGCACCAAAACAGATACGCTTGGAAACCCAACGCCGGCCGGAAAATCAACGAAACGGAGGTTGGAGGTAGATTCCGCCCCTTTTCTGACATCACCGGAGTTTGTCTCCGCTGCAAGGATCAAATTGATTGGAAACGCCGTTACGGAAAGTACAAACCCCTTTCCGAACCTGCCAAATGGTATGCTCCTTTTGCTTTTTCTTCCATTTTTAATTTGTTTCTCTTTCTGATGATGTTGGATTGGTAA

Protein sequence

MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYKPLSEPAKWYAPFAFSSIFNLFLFLMMLDW

Homology

[Close]

BLAST of ClCG11G004890 vs. Swiss-Prot
Match: CI085_HUMAN (Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1


Query: 1  MSSKQG------PPKHQNRYAWKPNAGRKINETE-VGGRFRPFSDITGVCLRCKDQIDWK 60
          MSS++G      P KHQN +++K +   K  +T+ +  +        GVC RCK+ ++W+
Sbjct: 1  MSSQKGNVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWR 60

Query: 61 RRYGKYKPLSEPAK 68
           +Y KYKPLS+P K
Sbjct: 61 VKYSKYKPLSKPKK 69

[Close]

BLAST of ClCG11G004890 vs. Swiss-Prot
Match: CI085_MOUSE (Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 1  MSSKQG------PPKHQNRYAWKPNAGRKINETE-VGGRFRPFSDITGVCLRCKDQIDWK 60
          MSS++G      P KHQN + +K +   K  +T+ +  +        GVC RCK+ ++W+
Sbjct: 1  MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWR 60

Query: 61 RRYGKYKPLSEPAK 68
           +Y KYKPLS+P K
Sbjct: 61 VKYSKYKPLSKPKK 69

[Close]

BLAST of ClCG11G004890 vs. Swiss-Prot
Match: CI085_RAT (Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 1  MSSKQG------PPKHQNRYAWKPNAGRKINETE-VGGRFRPFSDITGVCLRCKDQIDWK 60
          MSS++G      P KHQN + +K +   K  +T+ +  +        GVC RCK+ ++W+
Sbjct: 1  MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWR 60

Query: 61 RRYGKYKPLSEPAK 68
           +Y KYKPLS+P K
Sbjct: 61 VKYSKYKPLSKPKK 69

[Close]

BLAST of ClCG11G004890 vs. TrEMBL
Match: A0A0A0KSJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640570 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS+KQGPPKHQN+YAWKPNAGRKINETEVGGRFRP SDITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1  MSNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61 PLSEPAK 68
          PLSEP K
Sbjct: 61 PLSEPTK 67

[Close]

BLAST of ClCG11G004890 vs. TrEMBL
Match: B9H0H2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11580g PE=4 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-29
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1   MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
           MS+KQGPPKHQN YAWKPNAGRKINETEVGGR +P S+ITGVC RCK+QIDWKRRYGKYK
Sbjct: 47  MSNKQGPPKHQNNYAWKPNAGRKINETEVGGRLKPLSEITGVCQRCKEQIDWKRRYGKYK 106

Query: 61  PLSEPAK 68
           PL+EPAK
Sbjct: 107 PLTEPAK 113

[Close]

BLAST of ClCG11G004890 vs. TrEMBL
Match: I1NRV2_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-29
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS +QGPPKHQNRYAWKPN G+KINETE GGRFRPFS+ITGVC RCKDQIDWKRRYGKYK
Sbjct: 1  MSKRQGPPKHQNRYAWKPNLGQKINETEPGGRFRPFSEITGVCQRCKDQIDWKRRYGKYK 60

Query: 61 PLSEPAK 68
          P+ EPAK
Sbjct: 61 PIVEPAK 67

[Close]

BLAST of ClCG11G004890 vs. TrEMBL
Match: A0A0D3EUB8_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-29
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS +QGPPKHQNRYAWKPN G+KINETE GGRFRPFS+ITGVC RCKDQIDWKRRYGKYK
Sbjct: 1  MSKRQGPPKHQNRYAWKPNLGQKINETEPGGRFRPFSEITGVCQRCKDQIDWKRRYGKYK 60

Query: 61 PLSEPAK 68
          P+ EPAK
Sbjct: 61 PIVEPAK 67

[Close]

BLAST of ClCG11G004890 vs. TrEMBL
Match: W9R9K7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018183 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS+K GPPKHQN++AWKPNAGRKINETEVGGRFRP S++TGVC RCK+QI+WKRRYGKYK
Sbjct: 1  MSNKHGPPKHQNKFAWKPNAGRKINETEVGGRFRPLSEVTGVCHRCKEQIEWKRRYGKYK 60

Query: 61 PLSEPAK 68
          PLSEPAK
Sbjct: 61 PLSEPAK 67

[Close]

BLAST of ClCG11G004890 vs. TAIR10
Match: AT3G02220.1 (AT3G02220.1 unknown protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-26
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          M S+QGPPKHQN++AW P AG KINETEVGGRFRP S+ITGVC RC++QI WKR+YGKYK
Sbjct: 1  MGSRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYK 60

Query: 61 PLSEPAK 68
           L+E  K
Sbjct: 61 TLTEATK 67

[Close]

BLAST of ClCG11G004890 vs. NCBI nr
Match: gi|659118952|ref|XP_008459394.1| (PREDICTED: uncharacterized protein LOC103498541 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS+KQGPPKHQNRYAWKPNAGRKINETEVGGRFRP SDITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1  MSNKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61 PLSEPAK 68
          PLSEPAK
Sbjct: 61 PLSEPAK 67

[Close]

BLAST of ClCG11G004890 vs. NCBI nr
Match: gi|449447428|ref|XP_004141470.1| (PREDICTED: uncharacterized protein LOC101206376 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS+KQGPPKHQN+YAWKPNAGRKINETEVGGRFRP SDITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1  MSNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61 PLSEPAK 68
          PLSEP K
Sbjct: 61 PLSEPTK 67

[Close]

BLAST of ClCG11G004890 vs. NCBI nr
Match: gi|1009126901|ref|XP_015880408.1| (PREDICTED: uncharacterized protein C9orf85 homolog [Ziziphus jujuba])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-29
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS++QGPPKHQN+YAWKPNAG KINETEVGGR RP+S+ITGVCLRCK+QIDWKRRYGKYK
Sbjct: 2  MSNRQGPPKHQNKYAWKPNAGHKINETEVGGRLRPYSEITGVCLRCKEQIDWKRRYGKYK 61

Query: 61 PLSEPAK 68
          PL+EPAK
Sbjct: 62 PLTEPAK 68

[Close]

BLAST of ClCG11G004890 vs. NCBI nr
Match: gi|566166137|ref|XP_002305388.2| (hypothetical protein POPTR_0004s11580g [Populus trichocarpa])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1   MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
           MS+KQGPPKHQN YAWKPNAGRKINETEVGGR +P S+ITGVC RCK+QIDWKRRYGKYK
Sbjct: 47  MSNKQGPPKHQNNYAWKPNAGRKINETEVGGRLKPLSEITGVCQRCKEQIDWKRRYGKYK 106

Query: 61  PLSEPAK 68
           PL+EPAK
Sbjct: 107 PLTEPAK 113

[Close]

BLAST of ClCG11G004890 vs. NCBI nr
Match: gi|703109532|ref|XP_010099320.1| (hypothetical protein L484_018183 [Morus notabilis])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MSSKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPFSDITGVCLRCKDQIDWKRRYGKYK 60
          MS+K GPPKHQN++AWKPNAGRKINETEVGGRFRP S++TGVC RCK+QI+WKRRYGKYK
Sbjct: 1  MSNKHGPPKHQNKFAWKPNAGRKINETEVGGRFRPLSEVTGVCHRCKEQIEWKRRYGKYK 60

Query: 61 PLSEPAK 68
          PLSEPAK
Sbjct: 61 PLSEPAK 67

The following BLAST results are available for this feature:

BLAST of ClCG11G004890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CI085_HUMAN	3.9e-06	37.84	Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1	[more]
CI085_MOUSE	5.1e-06	37.84	Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1	[more]
CI085_RAT	5.1e-06	37.84	Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=1 SV=1	[more]

BLAST of ClCG11G004890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSJ8_CUCSA	1.4e-31	94.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640570 PE=4 SV=1	[more]
B9H0H2_POPTR	8.8e-29	86.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11580g PE=4 SV=2	[more]
I1NRV2_ORYGL	8.8e-29	86.57	Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1	[more]
A0A0D3EUB8_9ORYZ	8.8e-29	86.57	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
W9R9K7_9ROSA	1.1e-28	85.07	Uncharacterized protein OS=Morus notabilis GN=L484_018183 PE=4 SV=1	[more]

BLAST of ClCG11G004890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02220.1	3.6e-26	73.13	unknown protein	[more]

BLAST of ClCG11G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118952\|ref\|XP_008459394.1\|	3.2e-32	97.01	PREDICTED: uncharacterized protein LOC103498541 [Cucumis melo]	[more]
gi\|449447428\|ref\|XP_004141470.1\|	2.1e-31	94.03	PREDICTED: uncharacterized protein LOC101206376 [Cucumis sativus]	[more]
gi\|1009126901\|ref\|XP_015880408.1\|	2.5e-29	86.57	PREDICTED: uncharacterized protein C9orf85 homolog [Ziziphus jujuba]	[more]
gi\|566166137\|ref\|XP_002305388.2\|	1.3e-28	86.57	hypothetical protein POPTR_0004s11580g [Populus trichocarpa]	[more]
gi\|703109532\|ref\|XP_010099320.1\|	1.6e-28	85.07	hypothetical protein L484_018183 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019351	DUF2039

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0001510	RNA methylation
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G004890.1	ClCG11G004890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019351	Protein of unknown function DUF2039	PFAM	PF10217	DUF2039	coord: 8..67 score: 1.8
None	No IPR available	PANTHER	PTHR22876	FAMILY NOT NAMED	coord: 1..68 score: 9.2
None	No IPR available	PANTHER	PTHR22876:SF5	SUBFAMILY NOT NAMED	coord: 1..68 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G004890	Csa5G640570	Cucumber (Chinese Long) v2	cuwcgB353
ClCG11G004890	MELO3C022042	Melon (DHL92) v3.5.1	mewcgB009
ClCG11G004890	Cla016509	Watermelon (97103) v1	wcgwmB107
ClCG11G004890	Cla97C11G211680	Watermelon (97103) v2	wcgwmbB065
ClCG11G004890	Bhi06G000250	Wax gourd	wcgwgoB147
ClCG11G004890	CSPI05G29480	Wild cucumber (PI 183967)	cpiwcgB370
ClCG11G004890	Cucsa.157750	Cucumber (Gy14) v1	cgywcgB267
ClCG11G004890	CmaCh04G028070	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G004890	CmoCh04G029360	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G004890	Cp4.1LG01g22610	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G004890	CsGy5G028930	Cucumber (Gy14) v2	cgybwcgB328
ClCG11G004890	MELO3C022042.2	Melon (DHL92) v3.6.1	medwcgB008
ClCG11G004890	Carg05889	Silver-seed gourd	carwcgB0019
ClCG11G004890	CsaV3_5G038620	Cucumber (Chinese Long) v3	cucwcgB376

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G004890	Cucumber (Chinese Long) v3	cucwcgB380
ClCG11G004890	Watermelon (97103) v2	wcgwmbB074
ClCG11G004890	Wax gourd	wcgwgoB151
ClCG11G004890	Watermelon (Charleston Gray)	wcgwcgB070
ClCG11G004890	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G004890	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G004890	Wild cucumber (PI 183967)	cpiwcgB372
ClCG11G004890	Cucumber (Chinese Long) v2	cuwcgB355
ClCG11G004890	Melon (DHL92) v3.5.1	mewcgB008
ClCG11G004890	Melon (DHL92) v3.5.1	mewcgB049
ClCG11G004890	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G004890	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G004890	Melon (DHL92) v3.6.1	medwcgB049
ClCG11G004890	Silver-seed gourd	carwcgB0255