ClCG10G004130 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G004130
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr10 : 5288473 .. 5289981 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTGCTTTGGAAAGGTCTGCATGCTCTGCACCTGCCTGATTCTGGTGGTTGTGACCATCGGATTTCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCATAAGATTAAAGGTAAGGTCGATTTCTGCGATGGAGATCTCTGCGGCGGCGGTGGAAGGCCTTTCTTCGCGGCTCCTCCTCCTCGGTTTTAGGTTTCCGTTTCTGTGGATCTTCCTTTCGATTTTTTTTATTTTTATTTTTCATTTAGGGATGTTTTGGGCTTGGTTTATTATGCTTGCATATATGATATATTTCACGTAATTTTTTTTTTTAATTACATTTTTTTTGTTTGTTTTTCCTCCTAATATAAGCCATTTTCGTTTCTTTTTACGATAATACATGAGTTTGGATGACATAATGTAAAATTATTGAAGTGAACAAAATGTTTAGTTTCTAATTTGTGGAAATTCATGGCCTTATTTGAGGAAATTGGTTTTAGGTACTGTAAAAAAAAAAATAGTTATAGCTGATGATAAATAATTGATTTTTCGAAGGGTTTTTTCAAATATAAAAAAAAATAAACCAAAATATTTATAAATATAAATATAATAGTAGATAAACTATAATATTTTGATATTATTGGTAAATATTTAAAAATAAAAAAAAAATAGTACTAGCTCTTTTTTTTCTTTTTACCGATCCAAAATTTCGGAGAGATTTAAATGAGTAGCAATAAAATAAAATAAATAGCATAGTAATTAATGCTTCTAGATTTACAATTTTAGCAAATATTTTACATTTCAATACAAATACTCAAATAAGTCTCAATACACTCTAATATATATAAATACTATAACATCGATTGTTATATCAATAATATTTTATATTTGAAATGATATTTTGGAATGAATATCAATATATTGTTGACAAAATAATGATATAATTAAAATACATTATGAGTGAGTAGTAATATACTATTAAAACGCCAATTATATACTTTATATCAATTTTGAATGAATGTTGATAAAGTACTAATGTATTAATGATATACTTAAGATTACATTTTCTAATGAGCTTTGATGTACTATTGGTACGATAATAATATAATTGAAATACATTTTAAATAAGTGTTGATATATATACTATTGATACAATAATGTTATAATTGAAATAAACTATTCACCTTATTATGGAAGAATATGGTTTCTAAAAAACTTAGAACTAAGTTAGGATCAACTAAGTTTAGTTCCCTTTGAACTTGTTTATGATTACTTCAACATTAAAACTACATTTTAGTCACGTTTGAGTTTTGTCGTTTCATCAATGTAAGTGTATTATTTGTTTTTATGCCTTCAAGTCTACAAATAACAAGTGCACGAACACACATTGACTGATAGATTACACCAGTTGATATGCTAATGGGAGTAAAATTAGAATAACCTTAATTTTAGGTATTTTTTATTTTTTATGTCTTCAATATAAGCTTAATTTTTTTAAATCAGATAGTTAACAAACAAGGCCGATAG

mRNA sequence

ATGTGCTGCTTTGGAAAGGTCTGCATGCTCTGCACCTGCCTGATTCTGGTGGTTGTGACCATCGGATTTCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCATAAGATTAAAGGTAAGGTCGATTTCTGCGATGGAGATCTCTGCGGCGGCGGTGGAAGGCCTTTCTTCGCGGCTCCTCCTCCTCGGGATGTTTTGGGCTTGGTTTATTATGCTTGCATATATGATATATTTCACATAGTTAACAAACAAGGCCGATAG

Coding sequence (CDS)

ATGTGCTGCTTTGGAAAGGTCTGCATGCTCTGCACCTGCCTGATTCTGGTGGTTGTGACCATCGGATTTCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCATAAGATTAAAGGTAAGGTCGATTTCTGCGATGGAGATCTCTGCGGCGGCGGTGGAAGGCCTTTCTTCGCGGCTCCTCCTCCTCGGGATGTTTTGGGCTTGGTTTATTATGCTTGCATATATGATATATTTCACATAGTTAACAAACAAGGCCGATAG

Protein sequence

MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFAAPPPRDVLGLVYYACIYDIFHIVNKQGR

Homology

[Close]

BLAST of ClCG10G004130 vs. TrEMBL
Match: A0A0A0L2S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-22
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFA-A 60
          MCC GKVCMLCTCLILVVV IG LFGFGVFKDGFHKIK KVDFCDG  CGGGG   F+ A
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

Query: 61 PPP 63
          PPP
Sbjct: 61 PPP 63

[Close]

BLAST of ClCG10G004130 vs. TrEMBL
Match: I1M6D3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-19
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFA-A 60
          MCC G++CMLCTCL+LVV+ IG +FGFGVFK GFHKIK  V FCD   CGGGGRPF   A
Sbjct: 1  MCCGGRICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCDS--CGGGGRPFIGYA 60

Query: 61 PPP 63
          PPP
Sbjct: 61 PPP 61

[Close]

BLAST of ClCG10G004130 vs. TrEMBL
Match: W9QQT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023747 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-18
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCD----GDLCGGGGRPF 60
          MCC G++CMLCTCLIL+V+ IG LFGFGVFK+GFHK+K  VDFCD    G  C G GRPF
Sbjct: 1  MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFC-GTGRPF 60

Query: 61 FAAPP 62
          FA PP
Sbjct: 61 FAPPP 64

[Close]

BLAST of ClCG10G004130 vs. TrEMBL
Match: A0A151U2Q0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006135 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-18
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGG--GGRPFFA 60
          MCC G+VCMLCTCLILVV+ IG LFGFGVFK GFHKIK  V FCD   CGG  GGRPF  
Sbjct: 1  MCCGGRVCMLCTCLILVVLAIGLLFGFGVFKHGFHKIKDTVSFCDS--CGGAAGGRPFLG 60

Query: 61 -APPP 63
           APPP
Sbjct: 61 HAPPP 63

[Close]

BLAST of ClCG10G004130 vs. TrEMBL
Match: I1JJM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-18
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCD--GDLCGGGGRPFFA 60
          MCC G+VCMLCTCL+LVV+ IG LFGFGVFK GFHKIK  V FCD  G    GGGRPF  
Sbjct: 1  MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIG 60

Query: 61 -APPP 63
           APPP
Sbjct: 61 YAPPP 65

[Close]

BLAST of ClCG10G004130 vs. TAIR10
Match: AT3G13275.1 (AT3G13275.1 unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.3e-16
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDF-CDGDL-CGGG-GRPFF 60
          MCC G++CMLCTCL+LVV+ IGFLFGFGVFKDGFHKI   +   CD    CGGG GR  +
Sbjct: 1  MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGGLGRRGY 60

Query: 61 AAPPP 63
            P P
Sbjct: 61 GFPAP 64

[Close]

BLAST of ClCG10G004130 vs. NCBI nr
Match: gi|659096270|ref|XP_008449006.1| (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFAAP 60
          MCCFGK+CMLCTCLILVVV IG LFGFGVFKDGFHKIK KVDFCDG LC GGGRPFF AP
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLC-GGGRPFFPAP 60

Query: 61 PPR 64
          PPR
Sbjct: 61 PPR 62

[Close]

BLAST of ClCG10G004130 vs. NCBI nr
Match: gi|778675745|ref|XP_011650464.1| (PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-22
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFA-A 60
          MCC GKVCMLCTCLILVVV IG LFGFGVFKDGFHKIK KVDFCDG  CGGGG   F+ A
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

Query: 61 PPP 63
          PPP
Sbjct: 61 PPP 63

[Close]

BLAST of ClCG10G004130 vs. NCBI nr
Match: gi|571506235|ref|XP_006595678.1| (PREDICTED: uncharacterized protein LOC102665099 [Glycine max])

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-19
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFA-A 60
          MCC G++CMLCTCL+LVV+ IG +FGFGVFK GFHKIK  V FCD   CGGGGRPF   A
Sbjct: 1  MCCGGRICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCDS--CGGGGRPFIGYA 60

Query: 61 PPP 63
          PPP
Sbjct: 61 PPP 61

[Close]

BLAST of ClCG10G004130 vs. NCBI nr
Match: gi|502099707|ref|XP_004491542.1| (PREDICTED: uncharacterized protein LOC101495402 [Cicer arietinum])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCDGDLCGGGGRPFFA-A 60
          MCC GK+CMLCTCL+LVV+ IGF+FGFGVFK GFHK+K  V +CD    G GGRPFF  A
Sbjct: 1  MCCGGKICMLCTCLVLVVIVIGFMFGFGVFKHGFHKLKDTVSYCDSCGGGSGGRPFFGYA 60

Query: 61 PPP 63
          PPP
Sbjct: 61 PPP 63

[Close]

BLAST of ClCG10G004130 vs. NCBI nr
Match: gi|703084046|ref|XP_010092369.1| (hypothetical protein L484_023747 [Morus notabilis])

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-18
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 1  MCCFGKVCMLCTCLILVVVTIGFLFGFGVFKDGFHKIKGKVDFCD----GDLCGGGGRPF 60
          MCC G++CMLCTCLIL+V+ IG LFGFGVFK+GFHK+K  VDFCD    G  C G GRPF
Sbjct: 1  MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFC-GTGRPF 60

Query: 61 FAAPP 62
          FA PP
Sbjct: 61 FAPPP 64

The following BLAST results are available for this feature:

BLAST of ClCG10G004130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2S1_CUCSA	2.0e-22	82.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1	[more]
I1M6D3_SOYBN	6.1e-19	71.43	Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1	[more]
W9QQT2_9ROSA	5.1e-18	69.23	Uncharacterized protein OS=Morus notabilis GN=L484_023747 PE=4 SV=1	[more]
A0A151U2Q0_CAJCA	8.8e-18	73.85	Uncharacterized protein OS=Cajanus cajan GN=KK1_006135 PE=4 SV=1	[more]
I1JJM5_SOYBN	8.8e-18	70.77	Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1	[more]

BLAST of ClCG10G004130 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13275.1	3.3e-16	63.08	unknown protein	[more]

BLAST of ClCG10G004130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096270\|ref\|XP_008449006.1\|	9.6e-26	88.89	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
gi\|778675745\|ref\|XP_011650464.1\|	2.9e-22	82.54	PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus]	[more]
gi\|571506235\|ref\|XP_006595678.1\|	8.7e-19	71.43	PREDICTED: uncharacterized protein LOC102665099 [Glycine max]	[more]
gi\|502099707\|ref\|XP_004491542.1\|	1.1e-18	69.84	PREDICTED: uncharacterized protein LOC101495402 [Cicer arietinum]	[more]
gi\|703084046\|ref\|XP_010092369.1\|	7.4e-18	69.23	hypothetical protein L484_023747 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004130.1	ClCG10G004130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	FAMILY NOT NAMED	coord: 1..65 score: 2.5
None	No IPR available	PANTHER	PTHR36753:SF1	SUBFAMILY NOT NAMED	coord: 1..65 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G004130	Csa3G045170	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G004130	MELO3C014083	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G004130	Cla004446	Watermelon (97103) v1	wcgwmB057
ClCG10G004130	Cla97C10G188600	Watermelon (97103) v2	wcgwmbB038
ClCG10G004130	CSPI03G03940	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G004130	Cucsa.041850	Cucumber (Gy14) v1	cgywcgB018
ClCG10G004130	CmaCh16G009750	Cucurbita maxima (Rimu)	cmawcgB285
ClCG10G004130	CmaCh06G006870	Cucurbita maxima (Rimu)	cmawcgB727
ClCG10G004130	CmoCh06G007040	Cucurbita moschata (Rifu)	cmowcgB730
ClCG10G004130	CmoCh16G010160	Cucurbita moschata (Rifu)	cmowcgB277
ClCG10G004130	MELO3C014083.2	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G004130	Carg26831	Silver-seed gourd	carwcgB0004
ClCG10G004130	Carg23537	Silver-seed gourd	carwcgB0008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G004130	Cucumber (Chinese Long) v3	cucwcgB194
ClCG10G004130	Wax gourd	wcgwgoB080
ClCG10G004130	Watermelon (Charleston Gray)	wcgwcgB047
ClCG10G004130	Cucurbita maxima (Rimu)	cmawcgB730
ClCG10G004130	Cucurbita moschata (Rifu)	cmowcgB280
ClCG10G004130	Cucurbita moschata (Rifu)	cmowcgB733
ClCG10G004130	Wild cucumber (PI 183967)	cpiwcgB194
ClCG10G004130	Wild cucumber (PI 183967)	cpiwcgB448
ClCG10G004130	Cucumber (Chinese Long) v2	cuwcgB192
ClCG10G004130	Watermelon (97103) v1	wcgwmB079
ClCG10G004130	Cucurbita pepo (Zucchini)	cpewcgB194
ClCG10G004130	Cucurbita pepo (Zucchini)	cpewcgB766
ClCG10G004130	Bottle gourd (USVL1VR-Ls)	lsiwcgB038
ClCG10G004130	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G004130	Cucumber (Gy14) v2	cgybwcgB174