CmaCh06G006870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G006870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transmembrane protein, putative
Location	Cma_Chr06 : 3433427 .. 3435896 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAATAGAGGTATCGAATCCGGTAATCTTAAGAAACCCAGAAAAAAAGTGAAGAGCGAAGCACCGGCGAGACCCGAATTATATACCTGATGAAGATGGACATGAAAAAATGATAATGAAAATCCCTTACAAATTTATTTATTTTTTAATTATCTAAAAATATTTAATTTTTTTAAGTTCTATTAAATTTATAATTCAAATGTAATTAATCATTTGATTTTTTAAAATTAAATTTATTACATACAAAATTTAAAACTTCTTAAATACTTATTATTTTATTTTGCCCCCAAATAATATTAAAAAAATCGATTCCATTGCTCTTTGGAATCAAAACGGCTCTTCTATAATTAATTATTTTCTCCAAATTAAAATAATATTTATTGACGTATGAACTCTTTTCTATATATATTTATGAACAAATATCAAAATCATGCATGAATTAAGACGTTGGAATTAATTTAATAAGTGGATATTTCCACATAAGTATTTTAATGATATTAATAAGTCGAATTTTTTTTCTCTCCATGATGTGTGTATGTATCAATTTTTTATTATAAATGAAAGACTTTTGTTCTTAATTTAAGATTAATATTTGAAAATTATTTTTTTAAGAACAACATTTTATCCAAGTAAATAATTTAGAAATAAATTTTTAGTTAATTTCAATTTATTTAAATTTAAATAAAATAATTAAAAGTTAAGTAATAATTACTCACAAAAATTTATTGAGATCTACTCTATAAAATATTTATCGTTATAACTCGAACATCTTCCTCGAACAGAGAATACAAAAATTTAAAAGAAATTTATAATTTAGTTTTATACAAACTCGTTGTATGGAATACGTCACACATATGTCTCTATATAAAGAATTTGGATCAAAATATTTATAACTATTATAAAATGGACTGTATCAGTAATATTACTTGAATACAATTGCACTAATAAATTTAAATTTTCATATAAGGAATAATATTAAACTATAAATAAAATTATCAAAATTATTATTAAAAATTGGATAGTTAATCCTCACAGCTTTTGGCATGATTCAAATAATTTATTTTGAATGAAACACTAACCATCAAATTTTAGAAAAGTATTTAAAATATCCTCACATACCATCTCCATCGTTGACAATCATCACCCACCAGTAGCGACTATCGATATCGTTCGTCAATTACTCTGATGACCATCTTTAGCGACCACCACATACCCACCTACAAAGACCATAATACACCCTTCGGTAGTGACCATCTCTAATAACCATCATTTCAATATTCATCGACTGCCACCGTGCACCCACTACTAAAGGTCGTGTGTGAAGATAATTCTGGTGACAACCACGCACCTATCATCGACCATGGCAACCACAATTGTTAAACCATCGTGCACCCATTGCTAATAACCATATTTGATGACCACTACTGGTGACCATCACATACCCACCATTAGTGCCCATCTCCAGCAACCACTAAGGTGACACATTCAATGACATTGTCGACAATAATTCTTGTTACCACCTCCAGTAAGTATCGCTAGGGACAACACCAACCACCATCACGGGTGATGGGCCGTCGTAATAGTTAATTATAGAGTTTTAAATGCAAATTTAAATTTATAATTATAGCCAATCAAACAAAATTTAGTATAAAAAACCTTTGAAATATGTAAAAAAAAAAAAAAAACTAATTTAAGCATTTTAAAAATGATTTATGAGATATAAATAGTTGATTTTCATAAATTAATGGGCTAAAACGATAAAAATATTTTTAAATATTTTAAAAACTTTGAAGGATTTTAATAAAATTTTATAAACTTTATTTTTTATAAAATAAAATACTAATCATTTTCATCTAAAATTAATTATAAATAATTATAAATTATAAAAATTTAAAGATATTATTGAGTCATTTTGGGGTATTTTTATTAATTATAAAAAAAAAAAAAAAAGGAATTTAATTAGAAGAGTTTTTATTTTAGAGGGGAGTTGAATCTGATGGTGCCCTCCCACCAAACAGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

mRNA sequence

ATGGGAGAAATAGAGGTATCGAATCCGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

Coding sequence (CDS)

ATGGGAGAAATAGAGGTATCGAATCCGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

Protein sequence

MGEIEVSNPLHLIQRPRLPPLLLRKNNSFSPFSSPTKTKSLTLSGNCCLHFKPLHSRHRLKNHLHLPSFLPPLSLPRHFQPQIHSNEQDPASATMCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPPRRF

Homology

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BLAST of CmaCh06G006870 vs. TrEMBL
Match: A0A0A0L2S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFAA 154
           MCC GKVCM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F  A
Sbjct: 1   MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

[Close]

BLAST of CmaCh06G006870 vs. TrEMBL
Match: W9QQT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023747 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD----GGLCGGGRPFF 154
           MCC G++CM C+CL+L+ + IGLLFGFGVFK+GFHK+KD VDFCD    G  CG GRPFF
Sbjct: 1   MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFCGTGRPFF 60

[Close]

BLAST of CmaCh06G006870 vs. TrEMBL
Match: I1JJM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.2e-18
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD---GGLCGGGRPFFA 154
           MCC G+VCM C+CLVLV +AIGLLFGFGVFK GFHKIKD V FCD   GG  GGGRPF  
Sbjct: 1   MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIG 60

Query: 155 -APPRRF 158
            APP  F
Sbjct: 61  YAPPPLF 67

[Close]

BLAST of CmaCh06G006870 vs. TrEMBL
Match: A0A059BWY6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03660 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD---GGLCGGGRPF-- 154
           MCC  +VCMFC+CL++V V IGLLFGFGVFK GFHK+KD +  CD   GGLCG GRPF  
Sbjct: 1   MCCGTRVCMFCTCLIMVVVLIGLLFGFGVFKHGFHKLKDTIHDCDPAAGGLCGTGRPFLG 60

[Close]

BLAST of CmaCh06G006870 vs. TrEMBL
Match: I1M6D3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-16
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFA-AP 154
           MCC G++CM C+CLVLV +AIGL+FGFGVFK GFHKIKD V FCD    GGGRPF   AP
Sbjct: 1   MCCGGRICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCD-SCGGGGRPFIGYAP 60

Query: 155 PRRF 158
           P  F
Sbjct: 61  PPLF 63

[Close]

BLAST of CmaCh06G006870 vs. TAIR10
Match: AT3G13275.1 (AT3G13275.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDF-CDGGL-CGGG 147
           MCC G++CM C+CL+LV +AIG LFGFGVFKDGFHKI + +   CD    CGGG
Sbjct: 1   MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGG 53

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: gi|659096270|ref|XP_008449006.1| (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 5.5e-27
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPP 154
           MCCFGK+CM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFF APP
Sbjct: 1   MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFPAPP 60

Query: 155 RRF 158
            RF
Sbjct: 61  PRF 63

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: gi|778675745|ref|XP_011650464.1| (PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFAA 154
           MCC GKVCM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F  A
Sbjct: 1   MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: gi|703084046|ref|XP_010092369.1| (hypothetical protein L484_023747 [Morus notabilis])

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD----GGLCGGGRPFF 154
           MCC G++CM C+CL+L+ + IGLLFGFGVFK+GFHK+KD VDFCD    G  CG GRPFF
Sbjct: 1   MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFCGTGRPFF 60

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: gi|947125744|gb|KRH73950.1| (hypothetical protein GLYMA_02G303200 [Glycine max])

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD---GGLCGGGRPFFA 154
           MCC G+VCM C+CLVLV +AIGLLFGFGVFK GFHKIKD V FCD   GG  GGGRPF  
Sbjct: 1   MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIG 60

Query: 155 -APPRRF 158
            APP  F
Sbjct: 61  YAPPPLF 67

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: gi|702379403|ref|XP_010063224.1| (PREDICTED: uncharacterized protein LOC104450393 [Eucalyptus grandis])

HSP 1 Score: 92.8 bits (229), Expect = 5.7e-16
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD---GGLCGGGRPF-- 154
           MCC  +VCMFC+CL++V V IGLLFGFGVFK GFHK+KD +  CD   GGLCG GRPF  
Sbjct: 1   MCCGTRVCMFCTCLIMVVVLIGLLFGFGVFKHGFHKLKDTIHDCDPAAGGLCGTGRPFLG 60

The following BLAST results are available for this feature:

BLAST of CmaCh06G006870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2S1_CUCSA	1.5e-20	80.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1	[more]
W9QQT2_9ROSA	3.2e-18	67.19	Uncharacterized protein OS=Morus notabilis GN=L484_023747 PE=4 SV=1	[more]
I1JJM5_SOYBN	7.2e-18	71.64	Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1	[more]
A0A059BWY6_EUCGR	3.9e-16	67.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03660 PE=4 SV=1	[more]
I1M6D3_SOYBN	5.2e-16	68.75	Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1	[more]

BLAST of CmaCh06G006870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13275.1	8.1e-13	62.96	unknown protein	[more]

BLAST of CmaCh06G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096270\|ref\|XP_008449006.1\|	5.5e-27	88.89	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
gi\|778675745\|ref\|XP_011650464.1\|	2.2e-20	80.65	PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus]	[more]
gi\|703084046\|ref\|XP_010092369.1\|	4.6e-18	67.19	hypothetical protein L484_023747 [Morus notabilis]	[more]
gi\|947125744\|gb\|KRH73950.1\|	1.0e-17	71.64	hypothetical protein GLYMA_02G303200 [Glycine max]	[more]
gi\|702379403\|ref\|XP_010063224.1\|	5.7e-16	67.69	PREDICTED: uncharacterized protein LOC104450393 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006870.1	CmaCh06G006870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	FAMILY NOT NAMED	coord: 79..157 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G006870	Cucsa.041850	Cucumber (Gy14) v1	cgycmaB0033
CmaCh06G006870	Cla004446	Watermelon (97103) v1	cmawmB783
CmaCh06G006870	Csa3G045170	Cucumber (Chinese Long) v2	cmacuB825
CmaCh06G006870	MELO3C014083	Melon (DHL92) v3.5.1	cmameB764
CmaCh06G006870	ClCG10G004130	Watermelon (Charleston Gray)	cmawcgB727
CmaCh06G006870	CSPI03G03940	Wild cucumber (PI 183967)	cmacpiB838
CmaCh06G006870	CmoCh06G007040	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G006870	CmoCh16G010160	Cucurbita moschata (Rifu)	cmacmoB804
CmaCh06G006870	Lsi07G014450	Bottle gourd (USVL1VR-Ls)	cmalsiB775
CmaCh06G006870	MELO3C014083.2	Melon (DHL92) v3.6.1	cmamedB869
CmaCh06G006870	Cla97C10G188600	Watermelon (97103) v2	cmawmbB845
CmaCh06G006870	Carg23537	Silver-seed gourd	carcmaB0013

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G006870	CmaCh16G009750	Cucurbita maxima (Rimu)	cmacmaB354

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G006870	Wild cucumber (PI 183967)	cmacpiB837
CmaCh06G006870	Cucumber (Chinese Long) v2	cmacuB824
CmaCh06G006870	Watermelon (Charleston Gray)	cmawcgB725
CmaCh06G006870	Watermelon (Charleston Gray)	cmawcgB730
CmaCh06G006870	Cucurbita pepo (Zucchini)	cmacpeB814
CmaCh06G006870	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G006870	Cucumber (Gy14) v2	cgybcmaB437
CmaCh06G006870	Cucumber (Gy14) v2	cgybcmaB438
CmaCh06G006870	Melon (DHL92) v3.6.1	cmamedB868
CmaCh06G006870	Cucumber (Chinese Long) v3	cmacucB0974
CmaCh06G006870	Cucumber (Chinese Long) v3	cmacucB0975
CmaCh06G006870	Watermelon (97103) v2	cmawmbB843
CmaCh06G006870	Wax gourd	cmawgoB0985
CmaCh06G006870	Wax gourd	cmawgoB0988
CmaCh06G006870	Wax gourd	cmawgoB0995
CmaCh06G006870	Cucumber (Gy14) v1	cgycmaB0032