Carg26831 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26831
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_473 : 58514 .. 58723 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAG

mRNA sequence

ATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAG

Coding sequence (CDS)

ATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAG

Protein sequence

MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGGGRPFFAAPPPRF

Homology

[Close]

BLAST of Carg26831 vs. NCBI nr
Match: XP_022932418.1 (uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932420.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932421.1 uncharacterized protein LOC111438773 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 50

[Close]

BLAST of Carg26831 vs. NCBI nr
Match: XP_023553402.1 (uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 50

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BLAST of Carg26831 vs. NCBI nr
Match: XP_008449006.1 (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCCFGK+CMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG+CG
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCG 50

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BLAST of Carg26831 vs. NCBI nr
Match: XP_011650464.1 (PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus] >KGN56003.1 hypothetical protein Csa_3G045170 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCG 50

[Close]

BLAST of Carg26831 vs. NCBI nr
Match: NP_001351526.1 (uncharacterized protein LOC100306625 [Glycine max] >KRH73950.1 hypothetical protein GLYMA_02G303200 [Glycine max])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCD---GGICG 51
          MCC G+VCMLCTCL+LVV+A+G LFGFGVFK GFHKIKD   FCD   GG  G
Sbjct: 1  MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAG 53

[Close]

BLAST of Carg26831 vs. TAIR10
Match: AT3G13275.1 (unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADF-------CDGGI 49
          MCC G++CMLCTCL+LVV+A+GFLFGFGVFKDGFHKI +           C GG+
Sbjct: 1  MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGGL 54

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BLAST of Carg26831 vs. TrEMBL
Match: tr|A0A1S3BL26|A0A1S3BL26_CUCME (uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-19
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCCFGK+CMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG+CG
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCG 50

[Close]

BLAST of Carg26831 vs. TrEMBL
Match: tr|A0A0A0L2S1|A0A0A0L2S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-18
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICG 51
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCG 50

[Close]

BLAST of Carg26831 vs. TrEMBL
Match: tr|I1JJM5|I1JJM5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCD---GGICG 51
          MCC G+VCMLCTCL+LVV+A+G LFGFGVFK GFHKIKD   FCD   GG  G
Sbjct: 1  MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAG 53

[Close]

BLAST of Carg26831 vs. TrEMBL
Match: tr|A0A151U2Q0|A0A151U2Q0_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_006135 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCD--GGICG 51
          MCC G+VCMLCTCLILVV+A+G LFGFGVFK GFHKIKD   FCD  GG  G
Sbjct: 1  MCCGGRVCMLCTCLILVVLAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGAAG 52

[Close]

BLAST of Carg26831 vs. TrEMBL
Match: tr|W9QQT2|W9QQT2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023747 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCD----GGICG 51
          MCC G++CMLCTCLIL+V+ +G LFGFGVFK+GFHK+KD  DFCD    G  CG
Sbjct: 1  MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFCG 54

The following BLAST results are available for this feature:

BLAST of Carg26831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932418.1	1.5e-20	100.00	uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 unchar...	[more]
XP_023553402.1	1.5e-20	100.00	uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo]	[more]
XP_008449006.1	1.0e-18	90.00	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
XP_011650464.1	1.2e-17	90.00	PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus] >KGN56003.1 hy...	[more]
NP_001351526.1	3.2e-12	71.70	uncharacterized protein LOC100306625 [Glycine max] >KRH73950.1 hypothetical prot...	[more]

BLAST of Carg26831 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13275.1	1.0e-12	61.82	unknown protein	[more]

BLAST of Carg26831 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26831 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL26\|A0A1S3BL26_CUCME	6.9e-19	90.00	uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=...	[more]
tr\|A0A0A0L2S1\|A0A0A0L2S1_CUCSA	7.6e-18	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1	[more]
tr\|I1JJM5\|I1JJM5_SOYBN	2.1e-12	71.70	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1	[more]
tr\|A0A151U2Q0\|A0A151U2Q0_CAJCA	2.1e-12	75.00	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_006135 PE=4 SV=1	[more]
tr\|W9QQT2\|W9QQT2_9ROSA	2.8e-12	66.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023747 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26831-RA	Carg26831-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	FAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26831	Cla004446	Watermelon (97103) v1	carwmB0006
Carg26831	Csa3G045170	Cucumber (Chinese Long) v2	carcuB0004
Carg26831	MELO3C014083	Melon (DHL92) v3.5.1	carmeB0003
Carg26831	ClCG10G004130	Watermelon (Charleston Gray)	carwcgB0004
Carg26831	CSPI03G03940	Wild cucumber (PI 183967)	carcpiB0004
Carg26831	CmaCh16G009750	Cucurbita maxima (Rimu)	carcmaB0005
Carg26831	CmoCh16G010160	Cucurbita moschata (Rifu)	carcmoB0006
Carg26831	MELO3C014083.2	Melon (DHL92) v3.6.1	carmedB0004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None