ClCG09G000050 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G000050
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 86978 .. 87671 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATGTGGGGTTGGGTTTGAATGGGGTTTACTCCGTTTAGCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATAGTGATTTTTCATACCCTTGATCTCTCTTTTCTTCCTGATGAGGTTTATGTTGGCTTCTCTGCTTCAAAATTCGACTTTAATTCACAGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

mRNA sequence

ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Coding sequence (CDS)

ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Protein sequence

MANGTVEAGIFSIEFDTKKNFLEDVGNHQKPSSEFGVNLSATGFTLFSRSHGRNLESTFRLWGLLCLAEAIFGIWSQPFGYVKRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGKRQIWNRLQRKFEKQRGQGEENLRGFSSREAGWD
Homology
[Close]
BLAST of ClCG09G000050 vs. TrEMBL
Match: A0A0A0LF07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 83  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

[Close]
BLAST of ClCG09G000050 vs. NCBI nr
Match: gi|700204154|gb|KGN59287.1| (hypothetical protein Csa_3G800700 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 83  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

[Close]
BLAST of ClCG09G000050 vs. NCBI nr
Match: gi|659084734|ref|XP_008443045.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 47  FSRSHGRNLESTFRLW----GLLCLAEAIFGIWSQPFGYVKRKKDLEEAFDDGIEDQLQD 106
           FS+   +  E+   +W    G++C A   F  W Q      R   LEE +   IE QLQ 
Sbjct: 260 FSKDSRQGKETPNWVWIIVAGIVCGAAFAFFFWVQR----SRVNHLEEPYGLDIEHQLQL 319

Query: 107 SNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
            +IA R QKF F+EL+K  DNFDP N LGK
Sbjct: 320 LSIAPRAQKFEFRELQKITDNFDPKNMLGK 345

[Close]
BLAST of ClCG09G000050 vs. NCBI nr
Match: gi|659084734|ref|XP_008443045.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis melo])

HSP 1 Score: 42.0 bits (97), Expect = 1.2e+00
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 1 

Query: 3   NGTVEAGIFSIEFDTKKNFLEDV-GNH------------QKPSSEFGVNLSATGF 45
           NGT  A I +IEFDT+KNF +D+  NH            Q+P   FGVNLS+  F
Sbjct: 139 NGTPNAQIVAIEFDTRKNFPQDIDSNHVGLNVNSVYSIAQQPLLGFGVNLSSANF 193

The following BLAST results are available for this feature:
BLAST of ClCG09G000050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF07_CUCSA1.9e-0868.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1[more]
BLAST of ClCG09G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204154|gb|KGN59287.1|2.7e-0868.00hypothetical protein Csa_3G800700 [Cucumis sativus][more]
gi|659084734|ref|XP_008443045.1|4.3e-0642.22PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]
gi|659084734|ref|XP_008443045.1|1.2e+0045.45PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G000050.1ClCG09G000050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G000050Cla000888Watermelon (97103) v1wcgwmB006
ClCG09G000050Cla97C09G161920Watermelon (97103) v2wcgwmbB035
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G000050Silver-seed gourdcarwcgB0723
ClCG09G000050Silver-seed gourdcarwcgB1002
ClCG09G000050Cucumber (Chinese Long) v3cucwcgB546
ClCG09G000050Wax gourdwcgwgoB066
ClCG09G000050Cucumber (Gy14) v1cgywcgB610
ClCG09G000050Cucurbita maxima (Rimu)cmawcgB308
ClCG09G000050Cucurbita maxima (Rimu)cmawcgB778
ClCG09G000050Cucurbita moschata (Rifu)cmowcgB301
ClCG09G000050Cucurbita moschata (Rifu)cmowcgB779
ClCG09G000050Wild cucumber (PI 183967)cpiwcgB553
ClCG09G000050Cucumber (Chinese Long) v2cuwcgB524
ClCG09G000050Melon (DHL92) v3.5.1mewcgB174
ClCG09G000050Cucurbita pepo (Zucchini)cpewcgB128
ClCG09G000050Bottle gourd (USVL1VR-Ls)lsiwcgB160
ClCG09G000050Cucumber (Gy14) v2cgybwcgB484
ClCG09G000050Melon (DHL92) v3.6.1medwcgB168