Cla000888 (gene) Watermelon (97103) v1

Overview
NameCla000888
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 20956213 .. 20956629 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATAGTGATTTTTCATACCCTTGATCTCTCTTTTCTTCCTGATGAGGTTTATGTTGGCTTCTCTGCTTCAAAATTCGACTTTAATTCACAGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

mRNA sequence

ATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATATTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Coding sequence (CDS)

ATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATATTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Protein sequence

MVDVFVRVQGVRFFVVKLRRSIGKHIKRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGKRQIWNRLQRKFEKQRGQGEENLRGFSSREAGWD
Homology
[Close]
BLAST of Cla000888 vs. TrEMBL
Match: A0A0A0LF07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 27  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 77
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

[Close]
BLAST of Cla000888 vs. NCBI nr
Match: gi|700204154|gb|KGN59287.1| (hypothetical protein Csa_3G800700 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 27  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 77
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

The following BLAST results are available for this feature:
BLAST of Cla000888 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF07_CUCSA1.2e-0868.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1[more]
BLAST of Cla000888 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204154|gb|KGN59287.1|1.8e-0868.00hypothetical protein Csa_3G800700 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000888Cla000888.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3DG3DSA:2.60.120.200coord: 26..76
score: 6.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla000888Cla97C09G161920Watermelon (97103) v2wmwmbB006
Cla000888ClCG09G000050Watermelon (Charleston Gray)wcgwmB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000888Melon (DHL92) v3.6.1medwmB180
Cla000888Silver-seed gourdcarwmB1027
Cla000888Cucumber (Chinese Long) v3cucwmB576
Cla000888Wax gourdwgowmB578
Cla000888Cucumber (Gy14) v1cgywmB646
Cla000888Cucurbita maxima (Rimu)cmawmB327
Cla000888Cucurbita moschata (Rifu)cmowmB321
Cla000888Wild cucumber (PI 183967)cpiwmB182
Cla000888Wild cucumber (PI 183967)cpiwmB569
Cla000888Melon (DHL92) v3.5.1mewmB183
Cla000888Cucumber (Chinese Long) v2cuwmB551
Cla000888Cucurbita pepo (Zucchini)cpewmB130
Cla000888Bottle gourd (USVL1VR-Ls)lsiwmB169
Cla000888Cucumber (Gy14) v2cgybwmB514