ClCG09G000050.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG09G000050.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 86978 .. 87671 (-)
Sequence length498
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATGTGGGGTTGGGTTTGAATGGGGTTTACTCCGTTTAGCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATAGTGATTTTTCATACCCTTGATCTCTCTTTTCTTCCTGATGAGGTTTATGTTGGCTTCTCTGCTTCAAAATTCGACTTTAATTCACAGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

mRNA sequence

ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Coding sequence (CDS)

ATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Protein sequence

MANGTVEAGIFSIEFDTKKNFLEDVGNHQKPSSEFGVNLSATGFTLFSRSHGRNLESTFRLWGLLCLAEAIFGIWSQPFGYVKRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGKRQIWNRLQRKFEKQRGQGEENLRGFSSREAGWD
Homology
[Close]
BLAST of ClCG09G000050.1 vs. TrEMBL
Match: A0A0A0LF07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 83  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

[Close]
BLAST of ClCG09G000050.1 vs. NCBI nr
Match: gi|700204154|gb|KGN59287.1| (hypothetical protein Csa_3G800700 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 83  KRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
           KRKKD EEA DD IE +LQD +IA RV K GFKELKK  D+F+P N LGK
Sbjct: 110 KRKKDSEEASDDVIEYELQDFSIAPRVPKMGFKELKKVTDSFNPKNSLGK 159

[Close]
BLAST of ClCG09G000050.1 vs. NCBI nr
Match: gi|659084734|ref|XP_008443045.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 47  FSRSHGRNLESTFRLW----GLLCLAEAIFGIWSQPFGYVKRKKDLEEAFDDGIEDQLQD 106
           FS+   +  E+   +W    G++C A   F  W Q      R   LEE +   IE QLQ 
Sbjct: 260 FSKDSRQGKETPNWVWIIVAGIVCGAAFAFFFWVQR----SRVNHLEEPYGLDIEHQLQL 319

Query: 107 SNIARRVQKFGFKELKKAMDNFDPNNKLGK 133
            +IA R QKF F+EL+K  DNFDP N LGK
Sbjct: 320 LSIAPRAQKFEFRELQKITDNFDPKNMLGK 345

[Close]
BLAST of ClCG09G000050.1 vs. NCBI nr
Match: gi|659084734|ref|XP_008443045.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis melo])

HSP 1 Score: 42.0 bits (97), Expect = 1.2e+00
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 1 

Query: 3   NGTVEAGIFSIEFDTKKNFLEDV-GNH------------QKPSSEFGVNLSATGF 45
           NGT  A I +IEFDT+KNF +D+  NH            Q+P   FGVNLS+  F
Sbjct: 139 NGTPNAQIVAIEFDTRKNFPQDIDSNHVGLNVNSVYSIAQQPLLGFGVNLSSANF 193

The following BLAST results are available for this feature:
BLAST of ClCG09G000050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF07_CUCSA1.9e-0868.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800700 PE=4 SV=1[more]
BLAST of ClCG09G000050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204154|gb|KGN59287.1|2.7e-0868.00hypothetical protein Csa_3G800700 [Cucumis sativus][more]
gi|659084734|ref|XP_008443045.1|4.3e-0642.22PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]
gi|659084734|ref|XP_008443045.1|1.2e+0045.45PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG09G000050ClCG09G000050gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG09G000050.1ClCG09G000050.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG09G000050.1.cds3ClCG09G000050.1.cds3CDS
ClCG09G000050.1.cds2ClCG09G000050.1.cds2CDS
ClCG09G000050.1.cds1ClCG09G000050.1.cds1CDS