ClCG08G004470 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G004470
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gamma-secretase subunit aph-1, putative
Location	CG_Chr08 : 14057046 .. 14068563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTGGAGCTTGAAACTTGCAAGTATACAAACAAATATCAGTCTCTAAATTTGGGAAAGGAAGGAAGGCGAGGAAGAAGGCGATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGGTACTTCTCCATTTCTAACTTTATGCTTTTCTCTTCCTTCAATATCTGTCTTTTCTTCTATTCTCATCGCGGATGAATTCAATTTCAATCACTCAACTTCATGCTTCTGTGTGCTTTGTTCTGGATTTTTCAAACTTCCAAATTAGGTTTCTGGACTTCGAATTTTAATAATTTCCGGTTTATTTCAATTCTTTGGTTCCAGCTTCGGATTGTATCGACTTTTTTTTTTTTTTTTTTTCTTTTTTTTTGTCCAATTCACATTCTATGTCCTCATCTAGTCAATTGTGTTGTTAAGCGGTGAGTATGTAGAATCCCAATTCCAAGTTTAGATTGAATTTGAAACTTTTTAAAGTTTGAACTATGTAGGCGCAAATATCAAATTTTAGGAATTAAATTTGTAATTGAACCTTTTTTAGATTCTATTTTGAAGTTGCTAACTGCTAAGCAGCTATTTTGTTTTACCGGATACCTTTCATGGTTATTATTGTTCATGTCTGCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGTGAGTTAATAATAGCATCTCAATATCACTTGGAGAATCGAGTAATTAGGGGGAACTGAAGCTTGAAGTACAAAGAAAAGCAAGTTCTTTCTCAAAGCACACCGTAGAAAAATAATAATGATAACAATGGTTTTATACATTGAAAATTGTGGTATTATGAGTGATTAGGTAAGAAACATTTTGGAAATGAGGGTTCTTCTAAAATATAGATTTTGTGCAACATTCCTTAGAAAAGTTTGATGGGATGCACCTCTTTGAATGTTGAGGTGAGTTGCCTCACCTCGCATAGTATAAACACTATTTAAAATCTGTTATAATAACTTGCTATAGACTATGGGAATTAAAAGCATGTAGGTTAGATTAGGTTTATTGAGGAAGTCTCAAAACATAAATGATTAGTTGTCGATGTATCAAGAGAAAGAGAGTACAAAGCAGTGAAGAAATTCCTTAAATGTTTATTATTTAGATAACTGTATTTTGGCTTTTCATGCATAAACTGCTGCTTAAACTTTACTTAACCAATAGCCAACTGATCACTGAACGCCTCAGCCTTCTTACCACTTAACACACATAGTACACATGAAAATATATATCTAGACAGGGTTCAAGGTTTTTTTTCACGAAGCTATGAAGGAGTTAGCTTGTAGGTTTAATTAGATGATTCATATGTGATATATTTATATTCTTTTAGTGGAAAATTAGGCCAAAATTGGAAAAAGGGAGTTTTTGGACTTCCATAGATCAGTGATGCATTCAGTGATTAAACTTCTCCATCAGTTCAGTGTTTATGTTGAGCAGCCATTGTTGCACAATCTTTTACTTTTTCCCTTCTAAGATTAATCAGTACGGGTACAGTCCTTTTTATTCTTGGTTTTTATTTACATTTACTTTTGTCTACCAGACAGAAATCAAAACACAATCATTTTCTCATTCATTCCAGATACTAAATTAGAACTGCCTAACTCTCTTATAATTGATAGATCTATTTGGCCTTGCTATTAGTATTAGTTTATCTTATTGGGGCATTATCCAAAGGGCATTTTTTTTAACCTTCCATGTCTGTAGATTACTAATTGGAGTCCTCTTACATGTACATCTTTCTGAAATATTTTCAGCCTTCTAAGTTTTGGCTATTTTTCGTACCCTTCTAAAGACATACCTCCTTCCTGTCTGCTACTTTAAATTTGTCATTGATTTGTCTTTTATAATATACATGTACTATCACTTAGATTCTAAAGTAACTGTTTTCTGTAGACTGTATAATTCTTTAGCTATAAACAATGATTTACCTACGATTCTCAGTTATTGAATTTTATAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGGTAAACTTTGATTTGATTACCCATGATTCAACTTATAGCCTTATGTTTTTTACCATTAGTTTCTATAAAGCCAAGATATTAAAATTTTGTTAGTACGTTCTACCCATATAAATTGTTGGGAAAAATACCCTTTTGGACCTTAGGGTTTGAGTATAGTTTTCACTTAGTCTCTAAGTTTCAAAATGTTATACTTTTATCCCTAAATTATGGGTTTAATTTCTATTTGGTGCCTAAATTTAAAAATGTTACATTTTGACCATTGATTTTTGTGTTTAGTTTTCATTTGGGCCCTAAGCGTCTATATTTTATACTTTTATTGTAGAGTTTTCGATAATGCTCACTTCTGCATTAACTTTAAGTTAATCAATTAAAAATAATTAGAAAATTTTAAATCAGTTTTAATAGTGACGGTAATTAGTGAAAACTAATTAATTTTTTATCACTTTAATTCTTTTAAATTAATTGATAGACATTTACACTATGAACCGAAAATGAGTATTTAGTGAAAAATCAAAGTTAAAAATGTAAATCTTGAAACATGAGGACCAAATGGAAACAAAACTCAAAACTCAAGGGTACAAATGTAACATTTTGAAGACCAAATAGAAAATTAAACTCAAAATTCAGGGATGAAAGTGTAGCATTTTGAAGCCTAGAGACCAAATGGAAATTAAACTCAAAACCTAGGGACTAAAAAGGTACTTTTCCCTAATAAGTAGAACCGTACAAAATGAGAACAATCATTAAGGTGTGGCTTTGAAGGGCTGGCCTATAAGAGAATGAACTTTTAAAATATGAAAGCTTAAATTTTCTGACCAGAATTCTAATTATGGAAACTTTAGATTGAGGGGAAAAAAACCTTCCTAGAAGTTGCACCTGACTTAAGGATCTTATTGAGAGCAATACAAAACAAAAGTTGTCTGTGTTGGAGGTAATCAGACTAACTAAGTCAGCTGTCCTAAATTTGAGACTTACTAAATGACGTTTTAATTTCTCTGCTCTAGTTTGAAAAGACTCTTTGTGAACTGAGGGCACAGTGATTTTTGCATTTCAGCAAGGTTCCCGGTCGACTTTGTTTTCTAATCTTACATGAGCTCTAATGTACACTTCTTAACTGGTTGCAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTTGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGGTGAGTTCTTACTCATATTTATTTGTGTAAGTACTTTGTATACCTCTGTGAACCATTATCCAAAAATTTAGGTCATTATTGTCACTCTAAATTTCATAAACCCTTGCATTCGATTCCAGCTATTCTAAGAGTTCATTTGTTCAAATACCATGTTTCTGATTGTTAATTGCTTGCACATTTTAAGGCTGGCAAATGGATCACTATTATTCTACTTTTTTTTACTGACGTTTATAACTGAAGGCAACTTATCTAGCATTATTTTGCTGGTATTCCTGCAGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGGTAAAACCCTAATCTTGCTCTGGATCATTGATTATTTTTTTATTATTTTTGCCCCCCCACGTCTAGTTTATTCATATGAAGAAAAGTAGCTTTTTCACCTAAGTGCTCATCATGTAGATTTTATGATCAAGCCCTTTCTTCCTGGGTTTTTATTTTAAATTTAGGTTTGTTTAGTAGGAGAATATATTTCAAATGGAAAAACAACACAACCTTATGGCAGGCAAAGAGCCCCACCAACAAAAGCTACAAAATGTCAACATGCATCGCCCAATTAACTTTATCAAGAATAAATGTGGTTACCAACAATTTGTGAAGGCCACTCCATTTTGAGGTCGATTACTTTGTTCAAAACCACAAATATATGGGTTCCTGTTCTTATTTATCAACATAAAAATGTCTAGTTTCTTTCAATCCTTAAGGAGAAGTCCAAGAGGGCCATACATCTTCACGAAACTCCATCTCTTTCATTTGGCCACCACCCTCCAAGAATGTCTCTTGAAAACAATGAACCAGCTAAAATTCTTCGGAAGAAAATGCCATCCTTCATATAAGGGCTGTTATAGTATATATGTAATTATAGGAGCTTATTAGTCTTTTGTCCTTTATTGTAATTTACTAGTCTTGGTTTAGGGTTTCCATGTATGCCTATATATTGTGACCTCTATCGTAGAATGAAGGTGAAGTTCTCTCATATTCTAGTTTCACGTTTATATGGTATTAGAGCAATTATGGTTTTGGTCTTCTATTTGTTCCTAGGGCAATCTTGGGTTTTGTGAGCAATTAGGGATTTGTGAACCCTTAGGGTTTTAGGTGTAGAGCACCTTGTTGGAGGTTTGGTCTTCTATTTCGATTTGGTGCATCACCTTTTTGTCTGGACCATTGCTGCCACTGAAACCCATCGCTGCCTCCATCGCAGGAACCCGCTGCCGTCAAGGTTGTTATTGAAGTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTTTTTTTTTTTTTTTTGTCACCGCCTAGCTAAGAAGAGAGTCCACTTTCCGATCTATAGGAACCCAAAAATTTGGCTGGAAAATCTTCAATGCGTGAGGTACACGTGCCAACGGATTTTGCCGCCCTCCGACACACGCTCCAGCGCGTGTGGGTGCGTGGATCGTCCGTTTTTTTCCCTTGTCGCCTAGGTTTGTCTTGGTTTTTATTTTCTGGCATGTTTGTGAGTTTAAATCTGATAAAGCACACTCAGTTGTAAGGATATTTGGACAAGTAGTTGATTTTTTCTTCCGCGGTTCAGATCTGTTTTTTACGGTGCAGTTTTGTTTTTGAAGCCTTTGGTAATTTCTTGGTTCTTGCTTCTTTCAACTGTTCGTGTAGATATTGTGGTCATAATCTGCTTGAGTTCGAAGTTGTTTTGTAAAAGAGGTCGCAATGATGTCTAATGTGGTTCAATTGAGGGCCCCATTCATCCATGGTTCATCTAAGAAGCTATTTGTTAATTCTGCAATTGAGGTCGATGAATTCCCGCAGTACTAAAAATCATCTTAAAGCATTTTCTTCATCATCCACACTCAATCCAATTACAACCATTTCTAATTTTAGGTAACATGAATCATTGTCTCCTTTCATTCTCTACACAATGGGTCATATACTCTGGTGCTACTGCTCATATGACAGGTAATCCCAACTTGTTTTCTACAATTTTGTCATCTACATCCATTCCCAGTGTTACCCTAGCAGATGGATCAAAGTCTTCTATTCTTGGATCTGACATGTAAATCTCACCCCATCTCCTTCTCAGTCATTTGTCCTACATTTACCTCAGTTTTCATTTAACTTGATCTCTATTAGTCAAATCACTCATGACCTTAATTGTTGTATCTCGTTTTATCCTAGCTATTGCTTGTTTTAGGATCTTGTGACAAAGAAGATTTTTAGGAAAGGACATGAATCTGGAGGACTTTATATTTTTTATTACCAAGTATCGACATCAACGATCGTTGCTTGTGCTGGAGTTGTTTCTCCATTTCATGCCCATTGCCGTCTTGGTCATCCATCTCTCAGTCTTAAGAAAGCTTTGTCCTTAGTTTCATAACTTGTCTTCAGTAAATTGTGACTCATGTCAGTTTGCCAAATTTCATTGTCTTAGCTCTAGTCCTAGAGTTTATAAACGGGCAAATTCCCCCTTCGAGTTAGTTCATTCAGATACTTGGGGTCTGTGTCCATTTGTGTCCAAAAGGGGATTTTGTTATTTTGTTACCTTTGTTGATGATCACTCTCGCATGACTTGGTTATATTTTATGAAAAATCGTTCTGAGTTGCTTTCTCATTTCTGCAATTTTCATGCTAAAATTTGAACTCAATTTGGTGTTTCCCTTTAAGACTGAGAATGACAATGTTGGTGAGTATTTTTCAGAAGCACTTAGGTCGTACCTCTGTAAGTATGGAATTGTTCATCAATCATCTTGTACTGATACTCCATGTCAAAATGGGGTTGCTGAACGAAAGAATAGGCATCTTCTTGAAACTGCACAAGCATTATCCTTTCAAATGCATGTTCCAGAGCATTTTTGGGTTGATGCAATTTCAACTGCTTGTTTTCTTACTAATCTAATACCTTCGTCTATTTTTCAAGGTCAGATTCCTTATCATGTTCTCTTTCCAACAATACAATTATTTCCTATTGAGCCAAAAATATTTGGTTGTACTTGTTTTGTTCGAGATGTTCGTCCTAATTTGACAAAGTTAGATCCCAAGTCTTTGAAGTGCATTTTCTTTGGTATTCTCGTGTTCAAAAAGGATACAGATGCTATTGTCCAAGTTTGAATCGATATTTTGTATCTCGAGATGTTACCTTCTTTGAGTACAAGCCTTTCACTACATCTTTGCCTAGTACAAGTTAGGGGGAGGATGATGATGATCTTTTTATTTATGCACTCATGTCTCCAACACCCTCCCTTGATTTGTCTCTTCCAGAGTCTATCCCTAACCGTCCACCTATAACTCGAGTCTACACTAAACGGCAACAACCTCTAGGTGAATGTTCTGTCCCAAAAGACTCTGTCATTAGACCCTAGACCAAGCGATGAGCTTCCCATTGCCATTTCTTAAAGGTTAACATTCTTGCACTTATTCTATTCTTGTGTCTCTTATGATCAATTATCATATGCTACATGTTTTTTTTGTTAAATCTCTTGATTCTGTCTCGATACCTAAAACTGCTCATGAAGCTTCGTCTCATTCTAGTTGGGGTGGTTGGTGCATTGTGATGATTGAAGAGATGAATGCCTTAGATGATAATAGTACTTGGGATTTAGTATCTCTTCCTGTAGGAAAGAAGACTATTAGGTACGAATGGGTGTTCGTAATTAAGGTTAATCTTGATGGATCAATAGCTCATTTAAAAGCACGTCTTGTGGCTAAAGGCTATGCCTAAACTTATGGGATTGACTATTTTGATACATTCTCTCCTGTTGCTAAGCTCACTTCTGTTAGGTTATTCATTTTTACAGTAGCATCTCAAGGTTGGCCTTTGCATCAACTTGACATTGGAGCAACCACCTGGGTTTGTTACTTAGGGGAGAATGATAAAGTGTGTTGCCTTTGCAAATCTTTGTATGGGTTGAAACAGAGTCCACGTGCATGGTTTAGAAAACTTAGTCAAGCATGTGAGCAGTTTGGAATGAAGAAAAACAAATCGGATCACTTAGTCTTCTACCAAAGATCTGCAAATGGTATTATTCTACTTGTTGTATATGTTGATGATATTGTCATAACTGGAAATGATACATCAGGTATATTATCTCTCAAATCTTTCCTTCAAGGTCAATTTCATACTAAAGATTTAGGACTGCTAAAGTATTTTTTGGGTATTGAAGTAATGAGAAGAAAGAAGGGTACTTTTATGTCACAGAGAAAATATGTGCTTGATTTGTTATTTGAGATAGGAAAATTGGGAGCTAAGCCATGCAGTACTCCAATGATGCTTGGTCTACAACTTTTAAAAGATGGAGAAACATTTAAAGATCCTGAGAGATATAGAAGATTGGTTGGGAGGTTGAATTATCTTATAGTAATGACCAGACATAGCTTATTCCGTAAACATTTTGAGTCAGTTTATGACCTCACCCATAGTGGATCATTGGGTTGCTATACAACTAATTATATGTTATCTCAAGGCTGCACCTGGACGTGGGATCTTATATAAAGATCATGGTCATATGAATATTGAATGTTTTTCAGATGTTGATTGGTTAGGATCAAAAGAAGACAGAAGATCGTCTGGTTATTGTGTTTCCATTGGTGGCAATTTGTTTTTGTGGAAGAGTAAGAAGCAAAACGTAGTCTTATGATCAAGGGCTAAATCCGAATACAAAGCAATGACACAATTGGTGTGTGAAATAATGTGGTTACATCAACTCTTGATTGAGTTGGGCTTCAATATTACAATTCTGACTAAGTTGTGTGACAATCAAGTTGCCTTCCATATTGCATCTAACCCAGTTTTTCATGAGTGTACTAAACATATTAAAATTGATTGTAATTTTATCTCGAAAAAGAATACAACAAGGTCTGGTGTCTAAGACTAGAGAGCAATTAGAAGATATTTTCACGAAAGCCTTAAATAGAGTTCAAATAGAGTACCTATGTAACAAGCTGGGCATGATTAACATATATGCTCTAGCTCGAGGGCAAGTGTTATAGTATATATGTAATTATAGGAGCTTATGAGTCTTTTGTCCTTTATTGTAATTTACTAGTCTAGGTTTAGGGTTTCCATGATTAACATATATGCTCTAGCTTGAGGGCAAGTGTTATAGTATATATGTAATTATAGGAGCTTATGAGTCTTTTGTCCTTTATTGTAATTTACTAGTCTAGGTTTAGGGTTTCCATGTATGCCTATATATATTGAACTCTATTGTATAGAATGAAGGTAAAGTTCTCTCATATTCTGGCGTTTACAAGTGCAATGGATGAGTAGGTGGTCAAAGGGGTTCCTCATCCTTTCAGAACAAATAGCAAACTCTGAGAGACTAAGCTCCATGACTATGGGCGTTTCTTCTTTCCTAAGTGTCTAAATTCTTGCAACTAGAAGAAAGACCTAGGAAGAAAATTTTCTTTGGCATCCTTGTTTCCTAACAAGCTTCACCGTTGGAGATTTCAGCTTAAGAGCTCTAGAAATTAACTGAAAAATTAGTCAATTTACATAAGAGACGTAATTATCGAAGCACCAAACCAGCCAGCCTCTGTCCGGCCGATCACTCCGCTGGCATCTTGTATTCATGCCTCCATTTGACTGCCGCTCGGGGATGTAGTTGTAGATATGTTAGTCTTAGTGGGTTGTTGGCTCCACTTGTTATCTCCTTCTATGACATGCTATTGTCGTCGCCATATTCCATAGGTAACTTAGTCATCTCTGACTCGCTTTCATATCAAGCCCAGCAGCATCAACCTTGTCTCTGAAACAAATGCAGTTATCTATTTCTCTGTCAAATAAGTTCCTCTTCCTTCCTCGGTGTCCGATAGACCAATTTTCAATATTGAAATTGCAAAGTTCTTAGCAACACCATTTTTTGTTTTATGGGTCCGTTTAGATTGACTTAAGAAAAAAAGTGTTTTTCAAAAAACTCATTTTTATTAAAACTCTTTTGATAAAAACTCTTTAAAATACACTTCAAAAGCTATTTTGAATGGTTGCCATACACTCTAATTTTTTCCAAAATGACATTTTTTAAATTGAACAATTGAAGATGTATTCCAAACACACCTATTTTATTTTTTACTCTTTTGTGATTAAGAAAATATTAGGGACTGGAAGGAAAATAGGGATTGGAATCAAGCTCATTATCCTTTCTAATTTGATGATATTGAAAGTTTAGTGTCCAAATTGATACAACTGATAAGTTCGTCATGGGTGAAAATTAATTTGTTTTCCTTTTCTTTTCCATTTTTTAATATTATAATTCATACTTTTCCTTTTGTTTCCAGACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCAATTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAACCGAAGTCGACAGGGTAATCGATAACATGTCATTGAACTGAACTACTCTTCTGCCGTAATATTGCTAATTCAGCATCTTGAAGGTATCTTCAAGAGAAGACCTATTATTCCCAGAGGAGTTATCTCCTTGTTCGTCCACCATTCCGAAAACGACGAACATGACTTTGTAGCCTAAGGAAATGCCATTTATGTTTCTTCTGAACGAGAATCCAGAATTAACATGATAACACATTTCTTAAAGTATTGATTACATTTCTGTATTATACTTATGGTTTCTTGAACGGTTGATTCAGAAATTTT

mRNA sequence

AAATTTTGGAGCTTGAAACTTGCAAGTATACAAACAAATATCAGTCTCTAAATTTGGGAAAGGAAGGAAGGCGAGGAAGAAGGCGATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTTGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCAATTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAACCGAAGTCGACAGGGTAATCGATAACATGTCATTGAACTGAACTACTCTTCTGCCGTAATATTGCTAATTCAGCATCTTGAAGGTATCTTCAAGAGAAGACCTATTATTCCCAGAGGAGTTATCTCCTTGTTCGTCCACCATTCCGAAAACGACGAACATGACTTTGTAGCCTAAGGAAATGCCATTTATGTTTCTTCTGAACGAGAATCCAGAATTAACATGATAACACATTTCTTAAAGTATTGATTACATTTCTGTATTATACTTATGGTTTCTTGAACGGTTGATTCAGAAATTTT

Coding sequence (CDS)

ATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTTGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCAATTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAACCGAAGTCGACAGGGTAATCGATAA

Protein sequence

MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLNSTILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFNGYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLMENRSRQGNR

Homology

[Close]

BLAST of ClCG08G004470 vs. Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 403.3 bits (1035), Expect = 1.9e-111
Identity = 187/245 (76.33%), Postives = 226/245 (92.24%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLF+SVI+ KPFLILT+LSSTLLWL+SLI+LS LWR FLPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           + + WPYA+L++TSV FQE LR LFWKVY+RLE++LD+FADR+S+PRL+LTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT++V+RCS++PFFL+SAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY++G KV+Q  VPVIHL AG++TLVNFAS GCVIG+PLLY++A LTL+HCGKMVW+RL+
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 ENRSR 246
           E+R++
Sbjct: 241 ESRNQ 245

[Close]

BLAST of ClCG08G004470 vs. Swiss-Prot
Match: APH1_DROME (Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 78/228 (34.21%), Postives = 119/228 (52.19%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+    G T IA GP  +LF+  IA+ P  I+ L+++   WL+SL L+S+LW   +PL 
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSL-LISSLWYALIPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQI-ALA 120
             +    A  ++ SV FQEA R + +++ R  E+ L A A+        +TD   I A  
Sbjct: 61  EFL----AFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYV 120

Query: 121 GGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAF 180
            GLG GI   +F  +++L    GP T  +   ++L FF+ SA  AL+ + +HTF  VI F
Sbjct: 121 SGLGFGIISGMFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFF 180

Query: 181 NGYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILT 228
           N +     +   +V   HL   L+TL+N A+      + + Y++ ILT
Sbjct: 181 NAFDTNNYIHIGYVVFSHLFVSLITLLN-ANELYTTTLLINYLVTILT 216

[Close]

BLAST of ClCG08G004470 vs. Swiss-Prot
Match: APH1B_DANRE (Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.6e-19
Identity = 69/238 (28.99%), Postives = 112/238 (47.06%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPL- 60
           MTVA   G T IA GP+++LF+  IA  P  ++ L++    WL+SL+L S +W   + + 
Sbjct: 1   MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60

Query: 61  --NSTILWPYAIL--ILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
             NS       ++  ++ SV+ QEA R  ++++ ++  E L A +   + P        Q
Sbjct: 61  NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMP----ISMRQ 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GLG G     F  +++L+ S GP T  +   SQ  +F+ SA + LA + +H F  
Sbjct: 121 LAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQ-HYFISSAFMTLAIILLHMFWG 180

Query: 181 VIAFNGYSEGKKVEQYFVPVIHLAAGLVTLVN-FASGGCVIGIPLLYIMAILTLIHCG 233
           V+ F      +      V   HL    +T VN    G  +    +L +MA+   +  G
Sbjct: 181 VVFFEACERQRWWALGAVVASHLVVSCLTFVNPHYQGSLIPTYIILSVMAVWAYLCAG 233

[Close]

BLAST of ClCG08G004470 vs. Swiss-Prot
Match: APH1B_MOUSE (Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 69/231 (29.87%), Postives = 108/231 (46.75%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALW---RGFL 60
           MT A   G   IA GP+L+L++  IA  P  ++ L++    WL+SL+L S  W   R   
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60

Query: 61  PLNSTILWPYAIL--ILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
                 +  Y ++  +L SV  QE  R+ ++K+ ++  E L +     + P + L     
Sbjct: 61  DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRL----- 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GLG GI   VF  ++ L+ S GP T  +   S   FFL SA + L  + +H F  
Sbjct: 121 LAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP-QFFLNSAFMTLVVIMLHVFWG 180

Query: 181 VIAFNGYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAIL 227
           V+ F+G  + K      V + HL   +V+   F S    + +   YI+ +L
Sbjct: 181 VVFFDGCEKNKWYTLLTVLLTHL---VVSTQTFLSPYYEVNLVTAYIIMVL 222

[Close]

BLAST of ClCG08G004470 vs. Swiss-Prot
Match: APH1B_HUMAN (Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-18
Identity = 68/231 (29.44%), Postives = 107/231 (46.32%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALW---RGFL 60
           MT A   G   IA GP+L+L++  IA +P  I+ L++    WL+SL++ S +W   R  +
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60

Query: 61  PLNSTILWPYAILI--LTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
                    Y ++     SV  QE  R  ++K+ ++  E L +     + P + L     
Sbjct: 61  DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRL----- 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GLG GI   VF  ++ L+ S GP T  +   S   FFL SA + L  + +H F  
Sbjct: 121 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP-QFFLYSAFMTLVIILLHVFWG 180

Query: 181 VIAFNGYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAIL 227
           ++ F+G  + K      V + HL   LV+   F S    I +   +I+ +L
Sbjct: 181 IVFFDGCEKKKWGILLIVLLTHL---LVSAQTFISSYYGINLASAFIILVL 222

[Close]

BLAST of ClCG08G004470 vs. TrEMBL
Match: A0A0B0PPT5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15904 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.0e-114
Identity = 200/245 (81.63%), Postives = 230/245 (93.88%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLFI+VI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPLN
Sbjct: 1   MTVAAGIGYALVALGPSLSLFIAVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI TS+ FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFTSIAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVT+HTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTVHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q FVP +HLAAG++TL+NFA GGCVIGIPLL++MA LT++HCG+MVWRRL 
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTLINFAYGGCVIGIPLLFLMATLTVMHCGRMVWRRLS 240

Query: 241 ENRSR 246
           EN+++
Sbjct: 241 ENQTQ 245

[Close]

BLAST of ClCG08G004470 vs. TrEMBL
Match: M5XTL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010446mg PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-114
Identity = 199/248 (80.24%), Postives = 228/248 (91.94%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+AAGIGY L+ALGPSLSLF+SVI+ KPFL+LT+LSSTLLWL SLI+LS +WR FLPL 
Sbjct: 1   MTIAAGIGYALLALGPSLSLFVSVISKKPFLVLTVLSSTLLWLTSLIVLSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           S+  WPY+ILI TSV FQE LRVLFWKVY+RLE+ LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  SSTWWPYSILIFTSVAFQEGLRVLFWKVYKRLEDTLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGP T+FVDRCS++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPGTFFVDRCSKIPFFLLSALIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+E  KV+Q FVP++HL AG+VTLVNFASGGC+IGIPLLY +AILTL+HCGKMVWRRL 
Sbjct: 181 GYAERNKVDQLFVPIVHLVAGMVTLVNFASGGCIIGIPLLYFIAILTLLHCGKMVWRRLT 240

Query: 241 ENRSRQGN 249
           ENR RQG+
Sbjct: 241 ENRGRQGS 248

[Close]

BLAST of ClCG08G004470 vs. TrEMBL
Match: A0A061ERN6_THECC (Processing isoform 1 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 3.8e-114
Identity = 202/247 (81.78%), Postives = 230/247 (93.12%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV AGIGY L+ALGPSLSLF+SVI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPL 
Sbjct: 1   MTVTAGIGYALLALGPSLSLFVSVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +SV FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSVAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCVSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q FVP +HLAAG++TL+NFASGGC+IGIPLL++MAILTL+HCG+MVWR L 
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTLINFASGGCIIGIPLLFLMAILTLMHCGRMVWRSLT 240

Query: 241 ENRSRQG 248
           EN+ RQG
Sbjct: 241 ENQ-RQG 246

[Close]

BLAST of ClCG08G004470 vs. TrEMBL
Match: B9HH67_POPTR (Gamma-secretase subunit APH1-like family protein OS=Populus trichocarpa GN=POPTR_0007s02080g PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.4e-113
Identity = 201/243 (82.72%), Postives = 226/243 (93.00%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLFISVI+ KPFLILT+LSSTLLWL+SLI+L+ +WR FLPL 
Sbjct: 1   MTVAAGIGYALLALGPSLSLFISVISKKPFLILTVLSSTLLWLMSLIVLAGVWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILILTSV FQE LR+LFWKVY+RLE++LDAFADR++KPRL+LTDKM IALAG
Sbjct: 61  STTWWPFAILILTSVSFQEGLRILFWKVYKRLEDILDAFADRLAKPRLFLTDKMLIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT+FVD+CSQLPFFLVSAIIALAFVTIHT SMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDKCSQLPFFLVSAIIALAFVTIHTCSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+QYFVP +HL AG+VTLVNFASGGCV+GIPLLY MAILTL+HCGKMVWRRL 
Sbjct: 181 GYAEGNKVDQYFVPAVHLVAGMVTLVNFASGGCVVGIPLLYFMAILTLLHCGKMVWRRLS 240

Query: 241 ENR 244
           E R
Sbjct: 241 ETR 243

[Close]

BLAST of ClCG08G004470 vs. TrEMBL
Match: A0A0D2R7Z3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G020200 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.1e-112
Identity = 196/243 (80.66%), Postives = 227/243 (93.42%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLFI+ I+ KPFLILTLLSSTL+WLISLI+LS +WR FLPLN
Sbjct: 1   MTVAAGIGYALVALGPSLSLFIAFISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +S+ FQE LR+LFWKVY+RLE++LDAFADRVSKPRLY TDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSIAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYPTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVT+HTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTVHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q FVP +HLAAG++T++NFA GGCVIGIPLL++MAILT++HCG+MVWRRL 
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTMINFAYGGCVIGIPLLFLMAILTVMHCGRMVWRRLS 240

Query: 241 ENR 244
           E++
Sbjct: 241 ESQ 243

[Close]

BLAST of ClCG08G004470 vs. TAIR10
Match: AT2G31440.1 (AT2G31440.1 INVOLVED IN: positive regulation of catalytic activity, protein processing)

HSP 1 Score: 403.3 bits (1035), Expect = 1.1e-112
Identity = 187/245 (76.33%), Postives = 226/245 (92.24%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLF+SVI+ KPFLILT+LSSTLLWL+SLI+LS LWR FLPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           + + WPYA+L++TSV FQE LR LFWKVY+RLE++LD+FADR+S+PRL+LTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT++V+RCS++PFFL+SAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY++G KV+Q  VPVIHL AG++TLVNFAS GCVIG+PLLY++A LTL+HCGKMVW+RL+
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 ENRSR 246
           E+R++
Sbjct: 241 ESRNQ 245

[Close]

BLAST of ClCG08G004470 vs. NCBI nr
Match: gi|659089851|ref|XP_008445715.1| (PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo])

HSP 1 Score: 483.0 bits (1242), Expect = 3.1e-133
Identity = 241/249 (96.79%), Postives = 247/249 (99.20%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV+AGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN
Sbjct: 1   MTVSAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST+LWPY ILILTSVIFQE LRVLFWKVYRRLE+MLDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STVLWPYVILILTSVIFQEVLRVLFWKVYRRLEDMLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHGI+HAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGISHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GYSEGKKV+QYFVPVIHLAAG+VTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM
Sbjct: 181 GYSEGKKVDQYFVPVIHLAAGMVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240

Query: 241 ENRSRQGNR 250
           ENRSRQGNR
Sbjct: 241 ENRSRQGNR 249

[Close]

BLAST of ClCG08G004470 vs. NCBI nr
Match: gi|449446239|ref|XP_004140879.1| (PREDICTED: gamma-secretase subunit APH1-like [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 1.3e-128
Identity = 234/244 (95.90%), Postives = 240/244 (98.36%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV+AGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN
Sbjct: 1   MTVSAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST+ WPYAILILTSVIFQE LRVLFWKVYRRLE+MLDAFADRVSKPRLYL DKMQIALAG
Sbjct: 61  STVSWPYAILILTSVIFQEVLRVLFWKVYRRLEDMLDAFADRVSKPRLYLADKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHGI+HAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGISHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GYSEGKKV+QYFVPVIHLAAG+VTLVNFASGGCVI IPLLYIMAILTLIHCGKMVWRRLM
Sbjct: 181 GYSEGKKVDQYFVPVIHLAAGMVTLVNFASGGCVISIPLLYIMAILTLIHCGKMVWRRLM 240

Query: 241 ENRS 245
           ENRS
Sbjct: 241 ENRS 244

[Close]

BLAST of ClCG08G004470 vs. NCBI nr
Match: gi|657960986|ref|XP_008372075.1| (PREDICTED: gamma-secretase subunit APH1-like [Malus domestica])

HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-116
Identity = 204/248 (82.26%), Postives = 231/248 (93.15%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+AAGIGY L+ALGPSLSLF+SVI+ KPFL+LT+LSSTLLWLISLI+LS LWR FLPL 
Sbjct: 1   MTIAAGIGYALLALGPSLSLFVSVISKKPFLVLTVLSSTLLWLISLIVLSGLWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           S+  WPY ILI TSV+FQE LRVLFWKVY++LE+ LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  SSAWWPYGILIFTSVVFQEGLRVLFWKVYKKLEDTLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT+FVDRCS++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDRCSKIPFFLLSALIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q FVPV+HL AGLVTLVNFASGGC+IGIPLL+ +AILTL+HCGKMVWRRL 
Sbjct: 181 GYAEGNKVDQIFVPVVHLVAGLVTLVNFASGGCIIGIPLLFFIAILTLLHCGKMVWRRLT 240

Query: 241 ENRSRQGN 249
           ENR RQG+
Sbjct: 241 ENRHRQGS 248

[Close]

BLAST of ClCG08G004470 vs. NCBI nr
Match: gi|694372756|ref|XP_009363655.1| (PREDICTED: gamma-secretase subunit APH1-like [Pyrus x bretschneideri])

HSP 1 Score: 427.2 bits (1097), Expect = 2.0e-116
Identity = 203/248 (81.85%), Postives = 231/248 (93.15%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+AAGIGY L+ALGPSLSLF+SVI+ KPFL+LT+LSSTLLWLISLI+LS LWR FLPL 
Sbjct: 1   MTIAAGIGYALLALGPSLSLFVSVISKKPFLVLTVLSSTLLWLISLIVLSGLWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           S+  WPY ILI TSV+FQE LRVLFWKVY++LE+ LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  SSAWWPYGILIFTSVVFQEGLRVLFWKVYKKLEDTLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT+FVDRCS++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDRCSKIPFFLLSALIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q FVPV+HL AG+VTLVNFASGGC+IGIPLL+ +AILTL+HCGKMVWRRL 
Sbjct: 181 GYAEGNKVDQIFVPVVHLVAGMVTLVNFASGGCIIGIPLLFFIAILTLLHCGKMVWRRLT 240

Query: 241 ENRSRQGN 249
           ENR RQG+
Sbjct: 241 ENRHRQGS 248

[Close]

BLAST of ClCG08G004470 vs. NCBI nr
Match: gi|1009169238|ref|XP_015903083.1| (PREDICTED: gamma-secretase subunit APH1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 426.4 bits (1095), Expect = 3.4e-116
Identity = 201/248 (81.05%), Postives = 231/248 (93.15%), Query Frame = 1


Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPS+SLF+SVI+ KPFLILTLLSSTLLWLISLI+LS +WR FLPL+
Sbjct: 1   MTVAAGIGYALLALGPSISLFVSVISKKPFLILTLLSSTLLWLISLIILSGIWRPFLPLS 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WPY ILI T+V FQE LR+LFWK+Y+RLE+ LDAFADRVSKPRL+LTDKMQIALAG
Sbjct: 61  STTWWPYGILIFTAVAFQEGLRILFWKIYKRLEDTLDAFADRVSKPRLFLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT FVDRCSQ+PFFLVSA+IALAFVTIHTFSM+IAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATAFVDRCSQMPFFLVSAVIALAFVTIHTFSMLIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVTLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLM 240
           GY+EG KV+Q+FVP++HLA+G+VTLVNFASGGC+IG+PLLY + ILTL+HCGKMVWRRL 
Sbjct: 181 GYAEGNKVDQFFVPIVHLASGMVTLVNFASGGCIIGVPLLYFLTILTLLHCGKMVWRRLT 240

Query: 241 ENRSRQGN 249
           ENRSR G+
Sbjct: 241 ENRSRPGS 248

The following BLAST results are available for this feature:

BLAST of ClCG08G004470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APH1_ARATH	1.9e-111	76.33	Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2	[more]
APH1_DROME	1.4e-24	34.21	Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1	[more]
APH1B_DANRE	6.6e-19	28.99	Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1	[more]
APH1B_MOUSE	1.1e-18	29.87	Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1	[more]
APH1B_HUMAN	7.3e-18	29.44	Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3	[more]

BLAST of ClCG08G004470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0PPT5_GOSAR	1.0e-114	81.63	Uncharacterized protein OS=Gossypium arboreum GN=F383_15904 PE=4 SV=1	[more]
M5XTL9_PRUPE	1.3e-114	80.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010446mg PE=4 SV=1	[more]
A0A061ERN6_THECC	3.8e-114	81.78	Processing isoform 1 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1	[more]
B9HH67_POPTR	1.4e-113	82.72	Gamma-secretase subunit APH1-like family protein OS=Populus trichocarpa GN=POPTR...	[more]
A0A0D2R7Z3_GOSRA	2.1e-112	80.66	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G020200 PE=4 SV=1	[more]

BLAST of ClCG08G004470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31440.1	1.1e-112	76.33	INVOLVED IN: positive regulation of catalytic activity, protein proc...	[more]

BLAST of ClCG08G004470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089851\|ref\|XP_008445715.1\|	3.1e-133	96.79	PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo]	[more]
gi\|449446239\|ref\|XP_004140879.1\|	1.3e-128	95.90	PREDICTED: gamma-secretase subunit APH1-like [Cucumis sativus]	[more]
gi\|657960986\|ref\|XP_008372075.1\|	1.2e-116	82.26	PREDICTED: gamma-secretase subunit APH1-like [Malus domestica]	[more]
gi\|694372756\|ref\|XP_009363655.1\|	2.0e-116	81.85	PREDICTED: gamma-secretase subunit APH1-like [Pyrus x bretschneideri]	[more]
gi\|1009169238\|ref\|XP_015903083.1\|	3.4e-116	81.05	PREDICTED: gamma-secretase subunit APH1-like isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009294	Aph-1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0016485	protein processing
GO:0043085	positive regulation of catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0016485	protein processing
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G004470.1	ClCG08G004470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009294	Gamma-secretase subunit Aph-1	PANTHER	PTHR12889	GAMMA-SECRETASE SUBUNIT APH-1	coord: 2..249 score: 2.1E
IPR009294	Gamma-secretase subunit Aph-1	PFAM	PF06105	Aph-1	coord: 2..237 score: 6.5
None	No IPR available	PANTHER	PTHR12889:SF0	GAMMA-SECRETASE SUBUNIT APH-1	coord: 2..249 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G004470	Csa6G041790	Cucumber (Chinese Long) v2	cuwcgB502
ClCG08G004470	MELO3C011641	Melon (DHL92) v3.5.1	mewcgB304
ClCG08G004470	Cla002838	Watermelon (97103) v1	wcgwmB405
ClCG08G004470	Cla97C08G147600	Watermelon (97103) v2	wcgwmbB336
ClCG08G004470	Bhi04G001634	Wax gourd	wcgwgoB632
ClCG08G004470	CSPI06G03540	Wild cucumber (PI 183967)	cpiwcgB528
ClCG08G004470	Cucsa.365050	Cucumber (Gy14) v1	cgywcgB626
ClCG08G004470	CmaCh17G005970	Cucurbita maxima (Rimu)	cmawcgB335
ClCG08G004470	CmoCh17G005780	Cucurbita moschata (Rifu)	cmowcgB332
ClCG08G004470	Lsi08G003610	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G004470	Cp4.1LG12g05110	Cucurbita pepo (Zucchini)	cpewcgB151
ClCG08G004470	CsGy6G003520	Cucumber (Gy14) v2	cgybwcgB460
ClCG08G004470	MELO3C011641.2	Melon (DHL92) v3.6.1	medwcgB299
ClCG08G004470	Carg22607	Silver-seed gourd	carwcgB0215
ClCG08G004470	CsaV3_6G003840	Cucumber (Chinese Long) v3	cucwcgB520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G004470	Cucurbita pepo (Zucchini)	cpewcgB312
ClCG08G004470	Silver-seed gourd	carwcgB0088
ClCG08G004470	Cucurbita maxima (Rimu)	cmawcgB816
ClCG08G004470	Cucurbita moschata (Rifu)	cmowcgB812