Cla002838 (gene) Watermelon (97103) v1

Overview
NameCla002838
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGamma-secretase subunit APH-1B (AHRD V1 ***- B6TH01_MAIZE); contains Interpro domain(s) IPR009294 Aph-1
LocationChr8 : 13440472 .. 13444847 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGGTACTTCTCCATTTCTAACTTTATGCTTTTCTCTTCCTTCAATATCTGTCTTTTCTTCTATTCTCATCGCGGATGAATTCAATTTCAATCACTCAACTTCATGCTTCTGTGTGCTTTGTTCTGGATTTTTCAAACTTCCAAATTAGGTTTCTGGACTTCGAATTTTAATAATTTCCGGTTTATTTCAATTCTTTGGTTCCAGCTTCGGATTGTATCGACTTTTTTTTTTTTTTTCTTTTTTTTGTCCAATTCACATTCTATGTCCTCATCTAGTCAATTGTGTTGTTAAGCGGTGAGTATGTAGAATCCCAATTCCAAGTTTAGATTGAATTTGAAACTTTTTAAAGTTTGAACTATGTAGGCGCAAATATCAAATTTTAGGAATTAAATTTGTAATTGAACCTTTTTTAGATTCTATTTTGAAGTTGCTAACTGCTAAGCAGCTATTTTGTTTTACCGGATACCTTTCATGGTTATTATTGTTCATGTCTGCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGTGAGTTAATAATAGCATCTCAATATCACTTGGAGAATCGAGTAATTAGGGGGAACTGAAGCTTGAAGTACAAAGAAAAGCAAGTTCTTTCTCAAAGCACACCGTAGAAAAATAATAATGATAACAATGGTTTTATACATTGAAAATTGTGGTATTATGAGTGATTAGGTAAGAAACATTTTGGAAATGAGGGTTCTTCTAAAATATAGATTTTGTGCAACATTCCTTAGAAAAGTTTGATGGGATGCACCTCTTTGAATGTTGAGGTGAGTTGCCTCACCTCGCATAGTATAAACACTATTTAAAATCTGTTATAATAACTTGCTATAGACTATGGGAATTAAAAGCATGTAGGTTAGATTAGGTTTATTGAGGAAGTCTCAAAACATAAATGATTAGTTGTCGATGTATCAAGAGAAAGAGAGTACAAAGCAGTGAAGAAATTCCTTAAATGTTTATTATTTAGATAACTGTATTTTGGCTTTTCATGCATAAACTGCTGCTTAAACTTTACTTAACCAATAGCCAACTGATCACTGAACGCCTCAGCCTTCTTACCACTTAACACACATAGTACACATGAAAATATATATCTAGACAGGGTTCAAGGTTTTTTTTCACGAAGCTATGAAGGAGTTAGCTTGTAGGTTTAATTAGATGATTCATATGTGATATATTTATATTCTTTTAGTGGAAAATTAGGCCAAAATTGGAAAAAGGGAGTTTTTGGACTTCCATAGATCAGTGATGCATTCAGTGATTAAACTTCTCCATCAGTTCAGTGTTTATGTTGAGCAGCCATTGTTGCACAATCTTTTACTTTTTCCCTTCTAAGATTAATCAGTACGGGTACAGTCCTTTTTATTCTTGGTTTTTATTTACATTTACTTTTGTCTACCAGACAGAAATCAAAACACAATCATTTTCTCATTCATTCCAGATACTAAATTAGAACTGCCTAACTCTCTTATAATTGATAGATCTATTTGGCCTTGCTATTAGTATTAGTTTATCTTATTGGGGCATTATCCAAAGGGCATTTTTTTTAACCTTCCATGTCTGTAGATTACTAATTGGAGTCCTCTTACATGTACATCTTTCTGAAATATTTTCAGCCTTCTAAGTTTTGGCTATTTTTCGTACCCTTCTAAAGACATACCTCCTTCCTGTCTGCTACTTTAAATTTGTCATTGATTTGTCTTTTATAATATACATGTACTATCACTTAGATTCTAAAGTAACTGTTTTCTGTAGACTGTATAATTCTTTAGCTATAAACAATGATTTACCTACGATTCTCAGTTATTGAATTTTATAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGGTAAACTTTGATTTGATTACCCATGATTCAACTTATAGCCTTATGTTTTTTACCATTAGTTTCTATAAAGCCAAGATATTAAAATTTTGTTAGTACGTTCTACCCATATAAATTGTTGGGAAAAATACCCTTTTGGACCTTAGGGTTTGAGTATAGTTTTCACTTAGTCTCTAAGTTTCAAAATGTTATACTTTTATCCCTAAATTATGGGTTTAATTTCTATTTGGTGCCTAAATTTAAAAATGTTACATTTTGACCATTGATTTTTGTGTTTAGTTTTCATTTGGGCCCTAAGCGTCTATATTTTATACTTTTATTGTAGAGTTTTCGATAATGCTCACTTCTGCATTAACTTTAAGTTAATCAATTAAAAATAATTAGAAAATTTTAAATCAGTTTTAATAGTGATGGTAATTAGTGAAAACTAATTAATTTTTTATCACTTTAATTCTTTTAAATTAATTGATAGACATTTACACTATGAACCGAAAATGAGTATTTAGTGAAAAATCAAAGTTAAAAATGTAAATCTTGAAACATGAGGACCAAATGGAAACAAAACTCAAAACTCAAGGGTACAAATGTAACATTTTGAAGACCAAATAGAAAATTAAACTCAAAATTCAGGGATGAAAGTGTAGCATTTTGAAGCCTAGAGACCAAATGGAAATTAAACTCAAAACCTAGGGACTAAAAAGGTACTTTTCCCTAATAAGTAGAACCGTACAAAATGAGAACAATCATTAAGGTGTGGCTTTGAAGGGCTGGCCTATAAGAGAATGAACTTTTAAAATATGAAAGCTTAAATTTTCTGACCAGAATTCTAATTATGGAAACTTTAGATTGAGGGGAAAAAAACCTTCCTAGAAGTTGCACCTGACTTAAGGATCTTATTGAGAGCAATACAAAACAAAAGTTGTCTGTGTTGGAGGTAATCAGACTAACTGAAGTCAGCTGTCCTAAATTTGAGACTTACTAAATGACGTTTTAATTTCTCTGCTCTAGTTTGAAAAGACTCTTTGTGAACTGAGGGCACAGTGATTTTTGCATTTCAGCAAGGTTCCCGGTCGACTTTGTTTTCTAATCTTACATGAGCTCTAATGTACACTTCTTAACTGGTTGCAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTCGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGGTGAGTTCTTACTCATATTTATTTGTGTAAGTACTTTGTATACCTCTGTGAACCATTATCCAAAAATTTAGGTCATTATTGTCACTCTAAATTTCATAAACCCTTGCATTCGATTCCAGCTATTCTAAGAGTTCATTTGTTCAAATACCATGTTTCTGATTGTTAATTGCTTGCACATTTTAAGGCTGGCAAATGGATCACTATTATTCTACTTTTTTTTACTGACGTTTATAACTGAAGGCAACTTATCTAGCATTATTTTGCTGGTATTCCTGCAGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGGTAAAACCCTAATCTTGCTCTGGATCATTGATTATTTTTTTATTATTTTTGCCCCCCCACGTCTAGTTTATTCATATGAAGAAAAGTAGCTTTTTCACCTAAGTGCTCATCATGTAGATTTTATGATCAAGCCCTTTCTTCCTGGGTTTTTATTTTAAATTTAGGTTTGTTTAGTAGGAGAATATATTTCAAATGGAAAAACAACACAACCTTATGGCAGGCAAAGAGCCCCACCAACAAAAGCTACAAAATGTCAACATGCATCGCCCAATTAACTTTATCAAGAATAAATGTGGTTACCAACAATTTGTGAAGGCCACTCCATTTTGAGGTCGATTACTTTGTTCAAAACCACAAATATATGGGTTCCTGTTCTTATTTATCAACATAAAAATGTCTAGTTTCTTTCAATCCTTAAGGAGAAGTCCAAGAGGGCCATACATCTTCACGAAACTCCATCTCTTTCATTTGGCCACCACCCTCCAAGAATGTCTCTTGAAAACAATGAACCAGCTAAAATTCTTCGGAAGAAAATGCCATCCTTCATATAA

mRNA sequence

ATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTCGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGTTTCTTTCAATCCTTAAGGAGAAGTCCAAGAGGGCCATACATCTTCACGAAACTCCATCTCTTTCATTTGGCCACCACCCTCCAAGAATGTCTCTTGAAAACAATGAACCAGCTAAAATTCTTCGGAAGAAAATGCCATCCTTCATATAA

Coding sequence (CDS)

ATGACAGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTTATTGCCCACAAACCCTTCTTGATTCTCACTCTCCTCTCCAGCACCCTGTTATGGCTCATTAGTTTGATATTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAATTCTTATATTGACTTCGGTCATTTTTCAAGAAGCTCTGCGGGTTCTTTTCTGGAAAGTCTACAGGAGATTAGAAGAAATGTTAGATGCTTTTGCTGACAGAGTTTCAAAGCCGCGTTTATATTTGACAGATAAGATGCAGATTGCTCTAGCTGGGGGTTTAGGTCATGGCATAGCTCATGCTGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCGACTTACTTCGTTGATAGGTGCTCCCAACTACCTTTTTTTCTTGTCTCTGCTATCATTGCTCTTGCATTTGTTACCATCCATACGTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGAACAGTATTTTGTTCCAGTCATTCATCTTGCTGCAGGACTGGTGTTTCTTTCAATCCTTAAGGAGAAGTCCAAGAGGGCCATACATCTTCACGAAACTCCATCTCTTTCATTTGGCCACCACCCTCCAAGAATGTCTCTTGAAAACAATGAACCAGCTAAAATTCTTCGGAAGAAAATGCCATCCTTCATATAA

Protein sequence

MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLNSTILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFNGYSEGKKVEQYFVPVIHLAAGLVFLSILKEKSKRAIHLHETPSLSFGHHPPRMSLENNEPAKILRKKMPSFI
Homology
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BLAST of Cla002838 vs. Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 6.6e-91
Identity = 157/205 (76.59%), Postives = 187/205 (91.22%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLF+SVI+ KPFLILT+LSSTLLWL+SLI+LS LWR FLPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           + + WPYA+L++TSV FQE LR LFWKVY+RLE++LD+FADR+S+PRL+LTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT++V+RCS++PFFL+SAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GY++G KV+Q  VPVIHL AG++ L
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTL 205

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BLAST of Cla002838 vs. Swiss-Prot
Match: APH1_DROME (Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 71/206 (34.47%), Postives = 106/206 (51.46%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+    G T IA GP  +LF+  IA+ P  I+ L+++   WL+SL L+S+LW   +PL 
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSL-LISSLWYALIPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQI-ALA 120
             +    A  ++ SV FQEA R + +++ R  E+ L A A+        +TD   I A  
Sbjct: 61  EFL----AFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYV 120

Query: 121 GGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAF 180
            GLG GI   +F  +++L    GP T  +   ++L FF+ SA  AL+ + +HTF  VI F
Sbjct: 121 SGLGFGIISGMFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFF 180

Query: 181 NGYSEGKKVEQYFVPVIHLAAGLVFL 206
           N +     +   +V   HL   L+ L
Sbjct: 181 NAFDTNNYIHIGYVVFSHLFVSLITL 195

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BLAST of Cla002838 vs. Swiss-Prot
Match: APH1B_MOUSE (Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.4e-18
Identity = 66/212 (31.13%), Postives = 99/212 (46.70%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALW---RGFL 60
           MT A   G   IA GP+L+L++  IA  P  ++ L++    WL+SL+L S  W   R   
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60

Query: 61  PLNSTILWPYAIL--ILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
                 +  Y ++  +L SV  QE  R+ ++K+ ++  E L +     + P + L     
Sbjct: 61  DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRL----- 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GLG GI   VF  ++ L+ S GP T  +   S   FFL SA + L  + +H F  
Sbjct: 121 LAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP-QFFLNSAFMTLVVIMLHVFWG 180

Query: 181 VIAFNGYSEGKKVEQYFVPVIHLAAGL-VFLS 207
           V+ F+G  + K      V + HL      FLS
Sbjct: 181 VVFFDGCEKNKWYTLLTVLLTHLVVSTQTFLS 206

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BLAST of Cla002838 vs. Swiss-Prot
Match: APH1A_MOUSE (Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-17
Identity = 65/223 (29.15%), Postives = 103/223 (46.19%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPL- 60
           M  A   G T +A GP+ SLF+  +A  P  ++ L++    WL+SL+L S +W   + + 
Sbjct: 1   MGAAVFFGCTFVAFGPAFSLFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60

Query: 61  -NSTILWPYAILIL---TSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
             S     Y +LI     SV+ QE  R  ++K+ ++ +E L + ++    P        Q
Sbjct: 61  DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GL  GI   VF  +++L  + GP    +   S   +FL SA +  A + +HTF  
Sbjct: 121 MAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPY-YFLTSAFLTAAIILLHTFWG 180

Query: 181 VIAFNGYSEGKKVEQYFVPVIH-LAAGLVFLSILKEKSKRAIH 218
           V+ F+     +      V   H L +GL FL+   E S   I+
Sbjct: 181 VVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY 218

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BLAST of Cla002838 vs. Swiss-Prot
Match: APH1B_DANRE (Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17
Identity = 58/184 (31.52%), Postives = 94/184 (51.09%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPL- 60
           MTVA   G T IA GP+++LF+  IA  P  ++ L++    WL+SL+L S +W   + + 
Sbjct: 1   MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60

Query: 61  --NSTILWPYAIL--ILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQ 120
             NS       ++  ++ SV+ QEA R  ++++ ++  E L A +   + P        Q
Sbjct: 61  NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMP----ISMRQ 120

Query: 121 IALAGGLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSM 180
           +A   GLG G     F  +++L+ S GP T  +   SQ  +F+ SA + LA + +H F  
Sbjct: 121 LAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQ-HYFISSAFMTLAIILLHMFWG 179

[Close]
BLAST of Cla002838 vs. TrEMBL
Match: A0A0A0KB01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041790 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 9.5e-105
Identity = 195/205 (95.12%), Postives = 201/205 (98.05%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV+AGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN
Sbjct: 1   MTVSAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST+ WPYAILILTSVIFQE LRVLFWKVYRRLE+MLDAFADRVSKPRLYL DKMQIALAG
Sbjct: 61  STVSWPYAILILTSVIFQEVLRVLFWKVYRRLEDMLDAFADRVSKPRLYLADKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHGI+HAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGISHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GYSEGKKV+QYFVPVIHLAAG+V L
Sbjct: 181 GYSEGKKVDQYFVPVIHLAAGMVTL 205

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BLAST of Cla002838 vs. TrEMBL
Match: A0A0B0PPT5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15904 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.5e-94
Identity = 171/205 (83.41%), Postives = 192/205 (93.66%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLFI+VI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPLN
Sbjct: 1   MTVAAGIGYALVALGPSLSLFIAVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI TS+ FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFTSIAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVT+HTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTVHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GY+EG KV+Q FVP +HLAAG++ L
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTL 205

[Close]
BLAST of Cla002838 vs. TrEMBL
Match: A0A061EIY8_THECC (Processing isoform 2 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.7e-93
Identity = 173/228 (75.88%), Postives = 199/228 (87.28%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV AGIGY L+ALGPSLSLF+SVI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPL 
Sbjct: 1   MTVTAGIGYALLALGPSLSLFVSVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +SV FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSVAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCVSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFLSILKEKSKRAIHLHETPSLSFGH 229
           GY+EG KV+Q FVP +HLAAG++F     +     +H  ++ SL  G+
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMFSQDFDKFCIWWLHYWDSSSLLDGN 228

[Close]
BLAST of Cla002838 vs. TrEMBL
Match: A0A061ERN6_THECC (Processing isoform 1 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.4e-93
Identity = 169/205 (82.44%), Postives = 190/205 (92.68%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV AGIGY L+ALGPSLSLF+SVI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPL 
Sbjct: 1   MTVTAGIGYALLALGPSLSLFVSVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +SV FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSVAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCVSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GY+EG KV+Q FVP +HLAAG++ L
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTL 205

[Close]
BLAST of Cla002838 vs. TrEMBL
Match: A0A061EJE4_THECC (Processing isoform 3 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 168/203 (82.76%), Postives = 189/203 (93.10%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV AGIGY L+ALGPSLSLF+SVI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPL 
Sbjct: 1   MTVTAGIGYALLALGPSLSLFVSVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +SV FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSVAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCVSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLV 204
           GY+EG KV+Q FVP +HLAAG++
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMM 203

[Close]
BLAST of Cla002838 vs. NCBI nr
Match: gi|659089851|ref|XP_008445715.1| (PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo])

HSP 1 Score: 390.6 bits (1002), Expect = 2.1e-105
Identity = 196/205 (95.61%), Postives = 202/205 (98.54%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV+AGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN
Sbjct: 1   MTVSAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST+LWPY ILILTSVIFQE LRVLFWKVYRRLE+MLDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STVLWPYVILILTSVIFQEVLRVLFWKVYRRLEDMLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHGI+HAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGISHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GYSEGKKV+QYFVPVIHLAAG+V L
Sbjct: 181 GYSEGKKVDQYFVPVIHLAAGMVTL 205

[Close]
BLAST of Cla002838 vs. NCBI nr
Match: gi|449446239|ref|XP_004140879.1| (PREDICTED: gamma-secretase subunit APH1-like [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 1.4e-104
Identity = 195/205 (95.12%), Postives = 201/205 (98.05%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV+AGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN
Sbjct: 1   MTVSAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST+ WPYAILILTSVIFQE LRVLFWKVYRRLE+MLDAFADRVSKPRLYL DKMQIALAG
Sbjct: 61  STVSWPYAILILTSVIFQEVLRVLFWKVYRRLEDMLDAFADRVSKPRLYLADKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHGI+HAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGISHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GYSEGKKV+QYFVPVIHLAAG+V L
Sbjct: 181 GYSEGKKVDQYFVPVIHLAAGMVTL 205

[Close]
BLAST of Cla002838 vs. NCBI nr
Match: gi|728849050|gb|KHG28493.1| (hypothetical protein F383_15904 [Gossypium arboreum])

HSP 1 Score: 354.0 bits (907), Expect = 2.2e-94
Identity = 171/205 (83.41%), Postives = 192/205 (93.66%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTVAAGIGY L+ALGPSLSLFI+VI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPLN
Sbjct: 1   MTVAAGIGYALVALGPSLSLFIAVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLN 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI TS+ FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFTSIAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVT+HTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTVHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GY+EG KV+Q FVP +HLAAG++ L
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMTL 205

[Close]
BLAST of Cla002838 vs. NCBI nr
Match: gi|590655711|ref|XP_007034064.1| (Processing isoform 2 [Theobroma cacao])

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 173/228 (75.88%), Postives = 199/228 (87.28%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MTV AGIGY L+ALGPSLSLF+SVI+ KPFLILTLLSSTL+WLISLI+LS +WR FLPL 
Sbjct: 1   MTVTAGIGYALLALGPSLSLFVSVISKKPFLILTLLSSTLVWLISLIILSGIWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           ST  WP+AILI +SV FQE LR+LFWKVY+RLE++LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  STTWWPFAILIFSSVAFQEGLRLLFWKVYKRLEDILDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFC+SLLTP+FGPATYFVDRCSQ+PFFLVSAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCVSLLTPAFGPATYFVDRCSQIPFFLVSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFLSILKEKSKRAIHLHETPSLSFGH 229
           GY+EG KV+Q FVP +HLAAG++F     +     +H  ++ SL  G+
Sbjct: 181 GYAEGNKVDQLFVPSVHLAAGMMFSQDFDKFCIWWLHYWDSSSLLDGN 228

[Close]
BLAST of Cla002838 vs. NCBI nr
Match: gi|657960986|ref|XP_008372075.1| (PREDICTED: gamma-secretase subunit APH1-like [Malus domestica])

HSP 1 Score: 349.4 bits (895), Expect = 5.4e-93
Identity = 168/205 (81.95%), Postives = 190/205 (92.68%), Query Frame = 1 

Query: 1   MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLN 60
           MT+AAGIGY L+ALGPSLSLF+SVI+ KPFL+LT+LSSTLLWLISLI+LS LWR FLPL 
Sbjct: 1   MTIAAGIGYALLALGPSLSLFVSVISKKPFLVLTVLSSTLLWLISLIVLSGLWRAFLPLK 60

Query: 61  STILWPYAILILTSVIFQEALRVLFWKVYRRLEEMLDAFADRVSKPRLYLTDKMQIALAG 120
           S+  WPY ILI TSV+FQE LRVLFWKVY++LE+ LDAFADRVSKPRLYLTDKMQIALAG
Sbjct: 61  SSAWWPYGILIFTSVVFQEGLRVLFWKVYKKLEDTLDAFADRVSKPRLYLTDKMQIALAG 120

Query: 121 GLGHGIAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFN 180
           GLGHG+AHAVFFCLSLLTP+FGPAT+FVDRCS++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDRCSKIPFFLLSALIALAFVTIHTFSMVIAFN 180

Query: 181 GYSEGKKVEQYFVPVIHLAAGLVFL 206
           GY+EG KV+Q FVPV+HL AGLV L
Sbjct: 181 GYAEGNKVDQIFVPVVHLVAGLVTL 205

The following BLAST results are available for this feature:
BLAST of Cla002838 vs. Swiss-Prot
Match NameE-valueIdentityDescription
APH1_ARATH6.6e-9176.59Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2[more]
APH1_DROME1.3e-2234.47Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1[more]
APH1B_MOUSE7.4e-1831.13Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1[more]
APH1A_MOUSE3.7e-1729.15Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2[more]
APH1B_DANRE4.8e-1731.52Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1[more]
BLAST of Cla002838 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB01_CUCSA9.5e-10595.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041790 PE=4 SV=1[more]
A0A0B0PPT5_GOSAR1.5e-9483.41Uncharacterized protein OS=Gossypium arboreum GN=F383_15904 PE=4 SV=1[more]
A0A061EIY8_THECC1.7e-9375.88Processing isoform 2 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1[more]
A0A061ERN6_THECC6.4e-9382.44Processing isoform 1 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1[more]
A0A061EJE4_THECC1.1e-9282.76Processing isoform 3 OS=Theobroma cacao GN=TCM_020119 PE=4 SV=1[more]
BLAST of Cla002838 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089851|ref|XP_008445715.1|2.1e-10595.61PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo][more]
gi|449446239|ref|XP_004140879.1|1.4e-10495.12PREDICTED: gamma-secretase subunit APH1-like [Cucumis sativus][more]
gi|728849050|gb|KHG28493.1|2.2e-9483.41hypothetical protein F383_15904 [Gossypium arboreum][more]
gi|590655711|ref|XP_007034064.1|2.4e-9375.88Processing isoform 2 [Theobroma cacao][more]
gi|657960986|ref|XP_008372075.1|5.4e-9381.95PREDICTED: gamma-secretase subunit APH1-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009294Aph-1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016485protein processing
GO:0043085positive regulation of catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0016485 protein processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0070765 gamma-secretase complex
cellular_component GO:0005887 integral component of plasma membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0004175 endopeptidase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU06669watermelon EST collection version 2.0transcribed_cluster
WMU39855watermelon EST collection version 2.0transcribed_cluster
WMU42584watermelon EST collection version 2.0transcribed_cluster
WMU61173watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002838Cla002838.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU39855WMU39855transcribed_cluster
WMU42584WMU42584transcribed_cluster
WMU06669WMU06669transcribed_cluster
WMU61173WMU61173transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009294Gamma-secretase subunit Aph-1PANTHERPTHR12889GAMMA-SECRETASE SUBUNIT APH-1coord: 2..203
score: 3.5E
IPR009294Gamma-secretase subunit Aph-1PFAMPF06105Aph-1coord: 2..203
score: 3.6
NoneNo IPR availablePANTHERPTHR12889:SF0GAMMA-SECRETASE SUBUNIT APH-1coord: 2..203
score: 3.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002838Cla97C08G147600Watermelon (97103) v2wmwmbB106
Cla002838MELO3C011641Melon (DHL92) v3.5.1mewmB313
Cla002838ClCG08G004470Watermelon (Charleston Gray)wcgwmB405
Cla002838Lsi08G003610Bottle gourd (USVL1VR-Ls)lsiwmB474
Cla002838Bhi04G001634Wax gourdwgowmB324
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002838Melon (DHL92) v3.5.1mewmB305