ClCG08G004110 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G004110
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=422
Location	CG_Chr08 : 12956675 .. 12967284 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATGGAGAAGGTGAAAAGAACAAGAATTCAAACTTCCTTCACCATTGTCATCTCCCAATCTTGACCTCTGACCTTCGTCTTCGAACTATAAATCAATCACCAACAGCAGTGCCTTCCTCTAGACAGGGGAGCTTTGCCCTAGGTTTAAGTCTTTATATGAATGAGATTCATATAAAAACTATAGGTTAAAATTAATATGAATGAGATTCATATTAAAACTATAGTTATGTGAGAGAAGGTTGTTTGAATATGATTCAAATTAAATTAAATATGTGATATTTAATTTATTAATTAATTGTTAAATAATTAATTATATTTATTAAATATGATTTAATATATTATAATAAAATTCATATTAATTTTACTTTAATATTATTATATTATTAATAACTCCCACTACATGTAGCGGGGAGTTATTTCCTTCTTCATAACATACGGGAAAAAAGAAAAAGAGAGAAAAAAAAAGTTAAGAAGTTTTTGCAGAAGAGTTATGTAAAGAAACAAAAATTCTCTCAAGTTTTTTCTATAAAAAATTTCTCTTCCTCTTAAGATTTTTCCTCCCTTTACCAAAAAGAGAGAAACACCAACTCCTCTTTGGTTTCGTTTACCAAGAAGAGTTTTGAAAGTATTGACGTTGATTGTATTGAGTTCGCTCTACATCAGTTAAGGTCATTGATGTTGAGTGTGTTGAGCTTGCTCTAACTCAACTAAGGTTTGGATACGTTTATGCGGTGGTTAACTAATTTACTCTGGTTCAATGGATGTTTTATGAATATGGATGCCAAGAACGCTAGCTTTCTAACATGTTAATGTTGTTAAGTTTCTAAAATCTTTGAGGTTGCTTTGCTACTAAGTTTTTTAAGCATGTTTACCAAAGAATGTTTTGAACCTTTATTCAATATTTATAAGCATGTTAAGATTTTCTAAACTCATCACTCATTGGGCTATTTTCGCTCACCTTTTCCATATGTTTTCTATTTCCCCTAGGTAGCCAAGGAGTTCCAGAGACCTAGCTGTCACAAGCTCGTCTGCCACCATCGTCAAAATTTCATTTTCTATCCTTTACACATAGTATGTTAGTAGGTTTTGGTTGGCATGTACATATGTAGTTGGGTTATGGGTTGTGTAGTGAAGCTATGTAGTTGTGTTCCCTTAACAAGGTTGTAATCTTTGTATAGGTATTTGTAATGTATACCTCCTCGATGTTGGTCTATCTGAATTTACTATGCTTAAGTTATATGTGCTTATCAGGTGTTAATGGGTAGCAAACCTCTGAGTCTAGTTAGGACTGAAATTCTTGATTTTATGTATGTATGCTCTATCAAGTGTTGTAGGCAACACCTGAAGTTCTGTTAAGTTGTGAATGCTAAAATAGTATCAATTTCACATCTCCTTCTAGATCAGAAGGGTATCGGGGAGAGGGTGTGACAATTGAGAAGAATCTAAACGAACGTTTAGGTTATCTAACTGAATGTTTAAGGGTTTGTATTCGATTTATATACTCGATCACTTACAAATGATATTGTCTATTAACCTATGTCTATTAGAATATGGACATTCTACTGATACACGTGCACCACATGCTGCATTCCCGACTTGACCTCTGCTAATATTGGTTCATTGTGGTAGATTCAAGCTTTATGGTACGTCTTATGGAATTGGAATTAGTCCTTATGCTTCAGTTGTAAGTCTCACTCCAAGTTTCCACAGGATGCTATCATGAATGCAGAAGGAATTTCTCCAAATGTTCGGCCGAATGGTTTGGTAATGAAAGACGGAAACGTGGTAGTATGAACAAATAAGAGAGCACATATGAATTTTTGGTCAAATAGTATTTACTTCCTTCATTATGCGCTTAGCCAACATGAAGATTACAGACCTATATGGTCAGAGGTGGATTTCATATTTGGGCCAATCAACCTCAAAAAACTGGCTCATGGCTGCAATTGGCCTGCATTCATGCACAATATACATTTTCAACTCCATGCAAATGACATCCGTGAGGACATCGTGAATGATAGTCTGCAACTGGTAGCCAGATTAATATCGTCCATCTTGATAGCTATTGAATTTGATCAAAGTCATCGGAAGTCTAAGTATGAGCCACGGGAAGTGAAGCAATTGAAGGTCACCCTCCAATATGACAAATTTCTTGATTGTGGCATTTTTTGTGTGAAATTTGTTGAATATTTTGTAACGAAAAAGGAAAGGGATAGTCTGAAACAAGATCATATGCCACTGTTTAGAAAACAATATGTTGCCCAATTGTGGGCAAATAAATATTTATGGTAATTTGCATTTATTTTGAATGCAACTGTATATTGATATTATCGTTTAAACTTTATAATACAAATAACTTCACCAACTCATTATCAAATTACCAAAAAAAAAAAAAAAATTGAACCAATTAGTTAAACAATCACACACAGTTGACTAAGTGATCGTTTAGGACCAATTATGAGATCACGTAGTAAATAATAAGCAATAGCCCACATTTTTTTTACACGGTCAACTAATAATTAATAAGTGATCCCATACTAGGTAATAAGCGATTGCGTGGTAAGTAATGAGTGATTGCCCACACTTTTTAACACGATCACCTAATAATTAATAAGTGTCTGCCCACACTTTTTTACACGATAGCCTATGAATTAATAAGCGACTACCCACACATTTTTACATGATGTCCTATCAATTAATTAGCGATCACTTAGATCTTCCCACTACAAGTCCTATCCTACAGCCTAGATGGACCCGTGCCAGGTGTTATCAGTTTCTGTCCGCATGTTTTCTTGTTATGTCCTCCCTAACCACATCGTGTACACTTGTGGACCTGTTGTGGCTCCAAACTAGTAGAAGGTATTCTAACGGTTTGACGTCGACCGCCACTTGGTACTTCTCATGGTAGTAGAATTTCAAAGTCTTGAAACTCTGGTCTTTGTCCCCATTCTTGTCTATGTCCAACTTGGTAGATTGGTTCGGCGTAAACGGCAAGCACACACTCAACGGTAAACCACTTTGCGCATAATGTTTGAACATTAATGTTTCGGAAGGTTGTCGCAACTATTGCATGTGAGCATATCCCTGCAGTTGAACTCCATACAAATACATGCCCGTGAACAAAGATCAACCAATCCCCCTAAATGTCCATCGTCCACATTAATTACATGCATGTCCACCAAAGAAACACGATATATTCTAGACACCAATTCTACATCCTTTAAAATAGTCATTATATAATCATTTACGATGTTTGTGCATGTCATTGCATGTCTACATCGGATATAGAACCAACCCTATGACAACAGCTTTAGGGGCGTCATTTAATTCCCAAAAGCCCACTAATCAAATAAATTTATAAAACTCTGAACCTTACTAACTACACTACAAGGGCGTAGTATAGGTGGCAAGACCGAGTTGTCTCATCGGGGAACCTAAGACAACTTTAGCTTTTTCTTGAATTTAGAGGTTGTCACAGGGAGGTTGTGTATTTTGTTGTAAGGAATGTAAAGACTTGAATTTAGAGTGCATAAAAGTAAAGCGGGAATTGAAATGAACTTAATTGATTAAAAGATCTAGCCTAGGATTCGGAATCCACCCATTTGTTTGGTTGATCATATAACATTTAGAAATATGCAATGCTTGCTTTCTTTATCCTTAGCCCATGTATTCAAGAAGACTCAATATATATGCCCTAATATGTTGATTAATTTCTTAAACAACCTAGATGTTCAACTAATTGGGTTCACTAGCATCCATATTAATTAAACATCTACATTAAGAAAGGTAATCAAGCTAAGTCGATAGAATAATGGGATAGCCTACGTTACTATTGATTCATTCTTGAATGTGATTAAACATGCAAAATGTTGTGAAACAATTGTTTAAAACAACCTACAATCAACCACATAGCATGTTTTAATCCATTTGCCCTTAAGATGGATGAAATACGAAAAGAAAGATGATAGCATTCAATGAATCGATGAGAGATGACCAATAACTCATGAATCCAAAGCTTAGACATTAAATTCTCATTCAAGAATAGTAAATAATCAACAAAATATGCATTAATGAACTACAAACCAAGTCTCACAACCATCCAAAATGGGTTTCAATCCTACCCTAAGCTAGAAACTACTTACCTTAGCCACTCATAATGTGCTAAGATGAAATTCAAACATGAAATAAATCCAAAATACAATAAGTTAAACGTTGAAAGAAGAAAATAAAGAAAAAATGGGTGTGAAGGCTCAAAAACTGAGCATGAAATGACCTAAATTCAACAAAATTGGCATTTATAACTGGTTGGAGCGTCTCACCTGAGAATTCGAAGTGCTTGCCCAGGCGCCAAGGGCCACTTGGGCGCTTTAGTGCGCATGTGGCTTCCGTGTTTGTCAATCTTTGAAAGACCTAAGCGCTTGCCTGATGAGTGCTCTCGGGTGCTCAACGCCTAGCGCAGTACTTAGGCGCTGCGCAGCTGCCCACTTTTGCTCCTTCGTCTTCTCTTTCTTCACGGTTGACGCTCCATAGCTCATTTTCAATTTGTTTTCACTCTATTTCGACTCCAGGGGTCAACTCTACCTCTTTGTGCTCAAAACCTACAAAATCATAGGAATAAACGCGTAAAATCCTAGAACAAGCCTGAATTAAGCTAAGGAAAGTAGCACCATTTTGGTTTTATCACCCTACAACCACTCACGGATATGTTCCAGTAGCATGGTGATTGGTAGTTCTCGTGCGTATTTTAACACTCCATTGAGGCATTCTACTATATTCCTTGTCATCTTGTCATACCTACAATGGACTTCATACACTTGTGCCCATCGTTGTAATCCAACTTCCTCAAGATAGGTAGTCACCCCAAGATATTGATGAAGTTTAGCCAAATATATCTGAAACTCACACATCCTATAAGCTTTGGCGGCAAGATAGAAATGTGGGATTATGTCCTTATTCTTGAGTTTGTCCACCAAATTATTTCGAATGTGGTATATACACAAGGCATTAAATGCCTCGAGAAATATACTTGAGACAACCTTCCCAATGGAGATGTGACAATATGATATAATCACTAAATCTAGAATGTCTCTAATCGAGGCCTTCAAGTGAGTCATGAATCAATGTCATGATGCATTTGTTGGGTTGTATGTCCTAAAACTCGTGGTTTGTAAATTTTGAACATATTCTGAATAAAGTTGTTATCGAGATTTATTCAATAAAGATGTTATTCAATATGTGAATTGTTTCTATCATAACTCTAAATCCAAGAAATTAAGAATCGGGGCTATGTTATGAATTCTTAGACTTTATGTGTAGACATAAAAATGGATCAAGTTTAAGTAATAGCCAAGACGATCTATAGTATAGGGATAGAGCTAGGTATCTTATCTTGGGGACACTATGAATGCAGCTCATTTTGTATTTGATACAGATGATGTGATCTTATATCGTTCATGTAGAGGATGAGAGTGGGGGCATCCTATGCAATGAGTTTGCATAAGACTAGACCATGAAATAATCACTTTTGCTTTATAACACCATTTACTATTAAAACTAATTATTTCAACCTGATTAAGTTATGAAAATAAATAAGCAGTAATAAATTGTTTCCATGTCATGTCTAGACAAATCATGCTGAGGTAACATTAACAAATCACATACGTATTATTTCTAAAGAAAAACCATGTAAGTACAATACATTTCAATCACATTTTCCTTAGTTGAGGCGGAGCAAAGCTCAACGCTACTCAACGTCGAAAACATCCTTAGTTGGGGCGGAGAAATCTCGACACACCCAACGTCAAATATCCTTAGCTGTATGGAGTAGTCTCAACACAACGTCTATCATACCTCTATGTGCACATAGATATCATATCCTGGGTTACCCGAATACCTTCTCAAGTCTTTCAGTATTGGGTCCCTTATACGAGATTTAGGCCACCCACATGCCTTCTCTGAGTCCTTCAGCATTGGGAACCTTTCTTTTAAAACATAATTCAAAAGCAACATGCTTTGAAAATAACATAATAAATATTCACAAGTTTAAACATCTCAAACTTTCACAATTTCTTTAACATTCATCATGCTTCCATAAAATCATAGATCAATGAATAGTATATTTTTCGTAAAACTTGGTTAACAACTAGCATGCTTCAAATAATTCCAATGCAAAACCATAATACACATTTACATAGAAACATATACTTTCTTTGAGCAAATAGTCATCATAGCACATTTAAAACCTGTGAAAAGCATAAGCATAAGAACATATTTCTAAGCAAAATTATATATCAAGAAAACTTTGTATAAAGTATGCTCATTTTGAATAAAATTGTCAGTCACAACTTGTCCTGACCCTTAAAGGGTTATATGCCTTTCCTAGCTCCTCTCGGCCTAAAATAGTATATTTCCCTTTGTTAGATTTCCTTAAAATTCCTTTTTACATAGCTAACAAGCCTTAGACATTTCTATTATTCACCATCGAGACCCTACTTCATAAAGAAAATCATCACCGAGACTATATTCCACAAAGAAATACTCCACCGAGACTATATTTCATAAAAGAGTTCACTAATGAATGAGATTCAGGCCATTAGCTATACTAAACCAACGAATTCAAACAACAAACCAAACTGTACCAACGAGACTGTGGACTAGCAAGACCAGCAAGATTTGTGAGACAAAACTGACCAGCGAGATTTGTCTCACTCTCGCTCCTTCATGCCTCAGTATCGTCCAACTCTCCAGTGAGACTCGTCTCCCTCTGCTACTATCTTCGCTACTGTCCACACTTCTAATTGTTAAATGTTGTATTTCTAGCCAGAATTAGAACTTCTTCCCTTCTACAAACTTGTCAAGAAATGTGTTTTCTAGCTTGCCTCAAAACGCCAGGGTCTAACTCTTCTTTGTTCAACAGATATTCCAATCTTATCAGACATCTTCAATTATATCACTTGAGCGGTATGTTCAACTAACTTGATCGTATTTGGATTTGATTAAGTGTCTGATAACCCAACTTTTGGCTTGTTGACGATTACCCATTCTCATTTCAAGTGTGTATGTATGGACGTTCAGATACTTCGTCACTTTGAAGGAATCATTTCCTTCCAATTTTTTTTTGCATGAACCCTCCATTTTCATTCCTCCACCAAACACCGTACAGTTAGCAAGCTATTTGTAAAACTTCTTTACACGATAGCCAAAGTCCTTTCTTATTGCAAGTATCAATAATTTAATTGATAAATCATATTTTGAAAGAAAATCTGGCCTTCCCTTATATCATTGTCATTCAAACGGTCGTGAGGTATTGTGATGAGGTCATCATACAATGGGTCCTTCGATGGTCTAGGTATATCTACAACTGGTTGGGTTGGAATATTGGGATACATTTGAACTGAAGGCATCGCCATAGGTGGGTTGGAACATGAATAGAAGGTGTTGGAATTGTTTGTGGTCCTAAACATTGTCCTTATACCTGGTTAGTATCAAGTTGTGGACTACATCTAGATTGGATGTTGTGACCAATCCAATCTTCATTTATGTCATCCCCTATGTTATATGACTCAATATTCTCATCTCATGAAGACATCGTGGGTATATTATGTGTTGGAATTGTAGGAATAGTTTGATTTGTTGGATTGCATTGCTAGTACATATATCATGTGTCTACTTCATGCTTTTCATGAGGTGTAACTGATACAACAATGACATTCGGCATGCATTACTGCCTTCTAAAAAAAAAAGTTAAGGTCTTCATCATCCACTATGTCAACCGAGAGAACTGGGACCAATAGATCGTAACATATCCGGATCGATGTTCAGTCGTTCGTGCAGAATACTCACTAATTCACTATACATTATATCATTTATGGCCTTTAGATCTTTCATATGACCTCCAACATAATTGCATCCGGACTGGTCCCATTCTCCACCAAATCATACAAAGATGTGAAGTAGCATCATTGATCTACAAATACAAAATTGACAATTAGATTCGAATTGCTATTAAAGTAAACGGTCACCAAACAAGTCATAAGCGATTGCCCAGTAAGTTGTAAGCGATCGCCTAATAAGATATAAACGATAGCCCAGCAAAGTATAATCGATCGTCCAACCAGCTATAAATGATCGCTTAACAAGTTACAAGTTATCGCTTATATGAATGTAAGCTTTCATTTACTTGTATATAAGCGATCATTTATATAAAACTAAACGATCTAGGAATAAAAATACTTACATTCTCTCCATTTCTGGTTCAGATGAACGATGTTGCTTTGTACCAAAAGACAAAATGAACTGAATGAAGATGAAAGCGATTGACACTGAAAATGTTGGACTGAAACTCTAAGAGAATAAGTTCGGGAGTTCGACTGAAAGTGAATAAGTGAGAGTGACCTTCCATTATTGATATCAATAACATTCAATGTTGTTGGTAGAATGTTAGTTGACAATGAATGCTTTAGTAGAATGTTGGTAAAGAAGTGTGTTGCATTCAAAACAATTCATCGCTGAAGAAGTTGTTCAAGTGCGAGAGTTTCTGGTTTGAGAAGAGGTTTTAAATTTGGGGGTAACTTTAGCATTTCACGAGGCAAGAAGGTCACAAATGATAATAGAAAGAGGTTATCATAAGAAAGTTTTTTATTTTTGAGTTATTTTATAAGATTTTCGAGCTGGGTACTGAGATTCAAATAAATAGTAGAAATGGCTGTTGCGGCTACGGCAAATTGACTTCTAATCACACTTCTACTGTAAGTCGTGATCCATCTTCCAATTTTAAGTGCTAGTTTGTTCATGTTGTCTGATAGAAGCGCCAGAAGGAAAGGGATTAGGAATTAGCGAGTCTATCTCTCACTGCGCCAGGTATGCCTAACAAGTGTTCGACGAAATGCCCAAATGATATAGATTCTTAAAACATTGGGAATTATCCAACTTTAAACCTAAATTTTTGGTGCAATCAGTACCCAATATCTAAAGATTCCAACTTTTTACTATTTGTGCCTCTGGCTATGAATCATTTTGGTATAGGATGAAAATATTTTTACGGGAACTGATTGCTTAGGCATTTTGCTTTGGGGTTTCAACTTTGTGACTTTTAATTTTGTGGTTAGTTCCGAATTTGTGGCTTGATTTTGAGTGTTTTGTATGATTTTAGCTGGGTCATGAGCGATTTTCTGATTTTGTTAGGATAACTTTTTTTTTTTTTTCTTGTTTTTGATATGAAACATAGAGTATATTTGTTACGAGAAAGTCTTTGAAATTTCAAGGCTGATGTTTTCTATATATTTTGTGCGAAGTTGATGGAATTCAATGATGCTAATGGATGGTAGAAGATGGTGACTTGGTTGTTTAGCAGGGTTAAACTCTTTGGTTTCCCATGTAAAAATCAGAGAGGATTGAATTTAAATTACCTGCAAGGTCGTTATCTGGTAAACATAAAACTGAAATGGGTGAAAGATAAATACTTAGACACTGTAGTGAGTGCTGAGAAGGACCTCAGGGCTGTTTGCTTTCTTGTGTCCATAATCTCTTCAAGTCCTGAACATTGCTTACCGGTCTACCATCTGCGTTGCCATCGTCGGCAGCTTGGTCTTCCAAATGATGTCAAGATGTCTACCTTCATTAGGAGATACCCTTCTATCTTTCATGAGTCACATATTCTTGACAGCGGAGGCACTCGTGTGCCATCTTTTTGCTTAACTCCAGAAGCTAGGGAACTTCATGAGGAGGAAATCATTGTCCTTCGGCAGTGTTGGACGGATCTTCGATCTAGGCTTTGCAGATTGCTAATGCTTACCAGTGATTCAACACTTCCTTTACAGACAATTGACCAGTTGAGATGGGACATGGGGCTGCCATATGATTATCAGAACTCTTTCATTCCATATAACCATGACTTGTTTTCATTCGTCCATCTCCGAGATGATCGCATTGGGTTGAAACTTCTTTCCTGGGATAATGATCTTGCTGTTTCTGAACTGCAGAAGAATGCTGCTTCCCAACAGATGGAAGAAGACATAAGAAATGGCTGTTTGGCCTTTCCAATTGGATTCACAAGGGGTTTTGGACTCAGGAGAAAATGTATGGATTGGTTAAAGGAATGGCAGAAGCTCCCTTACACTTCTCCATATTGTGATGCCTCCCATTTGGATCCCCGTACTGATGTATCTGAAAAGAGGATTGTCGGAGTCTTTCATGAGCTTCTTCACCTTACCTTGCAAAAGAAAACCGAACGAAAGAATGTAAGCAACCTGCGCAAACCATTCTCTATGCCTCAGAAGTTCACAAAAGTGTTCGAGCGCCATCCTGGTATCTTTTACATCTCTAAGAAGGACGACACGCAGACTGTAATCCTTCGAGAAGCATATGATGGTGACAAGCTTCTGCAGAAGCACCCTCTTGTTAGCATCAGGGAAAGATTTACAAGCATGTTGAGGAAAGGCCAACTAGATAGAAGCAGAGGTTTGTACAAAAAAGAAAATCCATTCGGTCACTTTCATCATCATGAATTGGATGAAACTCGATATAGTTCCGAAGAAGTGTCCGACTATAATTTGCTTTCAGAATATGATTCGGAATCAGATGGCCTGATTGACAACAACTGCTGA

mRNA sequence

ATGAAGAATGGAGAAGAAGCGCCAGAAGGAAAGGGATTAGGAATTAGCGAGTCTATCTCTCACTGCGCCAGGGTTAAACTCTTTGGTTTCCCATGTAAAAATCAGAGAGGATTGAATTTAAATTACCTGCAAGGTCGTTATCTGGTAAACATAAAACTGAAATGGGTGAAAGATAAATACTTAGACACTGTAGTGAGTGCTGAGAAGGACCTCAGGGCTGTTTGCTTTCTTGTGTCCATAATCTCTTCAAGTCCTGAACATTGCTTACCGGTCTACCATCTGCGTTGCCATCGTCGGCAGCTTGGTCTTCCAAATGATGTCAAGATGTCTACCTTCATTAGGAGATACCCTTCTATCTTTCATGAGTCACATATTCTTGACAGCGGAGGCACTCGTGTGCCATCTTTTTGCTTAACTCCAGAAGCTAGGGAACTTCATGAGGAGGAAATCATTGTCCTTCGGCAGTGTTGGACGGATCTTCGATCTAGGCTTTGCAGATTGCTAATGCTTACCAGTGATTCAACACTTCCTTTACAGACAATTGACCAGTTGAGATGGGACATGGGGCTGCCATATGATTATCAGAACTCTTTCATTCCATATAACCATGACTTGTTTTCATTCGTCCATCTCCGAGATGATCGCATTGGGTTGAAACTTCTTTCCTGGGATAATGATCTTGCTGTTTCTGAACTGCAGAAGAATGCTGCTTCCCAACAGATGGAAGAAGACATAAGAAATGGCTGTTTGGCCTTTCCAATTGGATTCACAAGGGGTTTTGGACTCAGGAGAAAATGTATGGATTGGTTAAAGGAATGGCAGAAGCTCCCTTACACTTCTCCATATTGTGATGCCTCCCATTTGGATCCCCGTACTGATGTATCTGAAAAGAGGATTGTCGGAGTCTTTCATGAGCTTCTTCACCTTACCTTGCAAAAGAAAACCGAACGAAAGAATGTAAGCAACCTGCGCAAACCATTCTCTATGCCTCAGAAGTTCACAAAAGTGTTCGAGCGCCATCCTGGTATCTTTTACATCTCTAAGAAGGACGACACGCAGACTGTAATCCTTCGAGAAGCATATGATGGTGACAAGCTTCTGCAGAAGCACCCTCTTGTTAGCATCAGGGAAAGATTTACAAGCATGTTGAGGAAAGGCCAACTAGATAGAAGCAGAGGTTTGTACAAAAAAGAAAATCCATTCGGTCACTTTCATCATCATGAATTGGATGAAACTCGATATAGTTCCGAAGAAGTGTCCGACTATAATTTGCTTTCAGAATATGATTCGGAATCAGATGGCCTGATTGACAACAACTGCTGA

Coding sequence (CDS)

ATGAAGAATGGAGAAGAAGCGCCAGAAGGAAAGGGATTAGGAATTAGCGAGTCTATCTCTCACTGCGCCAGGGTTAAACTCTTTGGTTTCCCATGTAAAAATCAGAGAGGATTGAATTTAAATTACCTGCAAGGTCGTTATCTGGTAAACATAAAACTGAAATGGGTGAAAGATAAATACTTAGACACTGTAGTGAGTGCTGAGAAGGACCTCAGGGCTGTTTGCTTTCTTGTGTCCATAATCTCTTCAAGTCCTGAACATTGCTTACCGGTCTACCATCTGCGTTGCCATCGTCGGCAGCTTGGTCTTCCAAATGATGTCAAGATGTCTACCTTCATTAGGAGATACCCTTCTATCTTTCATGAGTCACATATTCTTGACAGCGGAGGCACTCGTGTGCCATCTTTTTGCTTAACTCCAGAAGCTAGGGAACTTCATGAGGAGGAAATCATTGTCCTTCGGCAGTGTTGGACGGATCTTCGATCTAGGCTTTGCAGATTGCTAATGCTTACCAGTGATTCAACACTTCCTTTACAGACAATTGACCAGTTGAGATGGGACATGGGGCTGCCATATGATTATCAGAACTCTTTCATTCCATATAACCATGACTTGTTTTCATTCGTCCATCTCCGAGATGATCGCATTGGGTTGAAACTTCTTTCCTGGGATAATGATCTTGCTGTTTCTGAACTGCAGAAGAATGCTGCTTCCCAACAGATGGAAGAAGACATAAGAAATGGCTGTTTGGCCTTTCCAATTGGATTCACAAGGGGTTTTGGACTCAGGAGAAAATGTATGGATTGGTTAAAGGAATGGCAGAAGCTCCCTTACACTTCTCCATATTGTGATGCCTCCCATTTGGATCCCCGTACTGATGTATCTGAAAAGAGGATTGTCGGAGTCTTTCATGAGCTTCTTCACCTTACCTTGCAAAAGAAAACCGAACGAAAGAATGTAAGCAACCTGCGCAAACCATTCTCTATGCCTCAGAAGTTCACAAAAGTGTTCGAGCGCCATCCTGGTATCTTTTACATCTCTAAGAAGGACGACACGCAGACTGTAATCCTTCGAGAAGCATATGATGGTGACAAGCTTCTGCAGAAGCACCCTCTTGTTAGCATCAGGGAAAGATTTACAAGCATGTTGAGGAAAGGCCAACTAGATAGAAGCAGAGGTTTGTACAAAAAAGAAAATCCATTCGGTCACTTTCATCATCATGAATTGGATGAAACTCGATATAGTTCCGAAGAAGTGTCCGACTATAATTTGCTTTCAGAATATGATTCGGAATCAGATGGCCTGATTGACAACAACTGCTGA

Protein sequence

MKNGEEAPEGKGLGISESISHCARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLDRSRGLYKKENPFGHFHHHELDETRYSSEEVSDYNLLSEYDSESDGLIDNNC

Homology

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BLAST of ClCG08G004110 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-26
Identity = 100/360 (27.78%), Postives = 174/360 (48.33%), Query Frame = 1


Query: 56  VKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQLGLP-NDVKMSTFIR 115
           V+D   D  +  EK +R V    S+I S P H + +  L    R+LGL     +   F+ 
Sbjct: 47  VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query: 116 RYPSIFHESHILDSGGTRVPSFCLTPEARE-LHEEEIIVLRQCWTDLRSRLCRLLMLTSD 175
           ++P +F    I +    R+    LT +A + +  E   VL Q   D  +RL +L+M+++ 
Sbjct: 107 KFPHVFE---IYEHPVQRILYCRLTRKALDQIRHEHEAVLDQI-PDAVTRLRKLVMMSNT 166

Query: 176 STLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVHLRDDRIG-LKLLSWDNDLAVSEL 235
             + L+ +   R + GLP D++ S I  +   F  +   + R   ++++  D +L++  +
Sbjct: 167 GRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAI 226

Query: 236 QKNAASQQME-----EDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKLPYTSPYCDASH 295
           ++    +        ED+R    +F + F  GF + +     + +WQ+LPY SPY D S 
Sbjct: 227 ERVREIEYRTKGIDAEDVR---FSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISG 286

Query: 296 LDPRTDVS----EKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVFERHPGI 355
            D R+  +    EKR V   HELL LT++KK   + +++ R   ++P+K  +   +H GI
Sbjct: 287 YDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGI 346

Query: 356 FYISKKDD---TQTVILREAYDGDKLLQKHPLVSIRERFTSML----RKGQLDRSRGLYK 397
           FYIS + +     TV LRE Y   +L++ + +   R R   ++    RK ++D     Y+
Sbjct: 347 FYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYR 399

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BLAST of ClCG08G004110 vs. TrEMBL
Match: A0A0A0KAR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022360 PE=4 SV=1)

HSP 1 Score: 786.9 bits (2031), Expect = 1.2e-224
Identity = 382/418 (91.39%), Postives = 399/418 (95.45%), Query Frame = 1


Query: 23  ARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIIS 82
           +R+KL GF CKNQRGLNLNYLQGRYLVNI+LKWVKDK LDTVVSAEKDL+AVCFLVSIIS
Sbjct: 7   SRLKLSGFLCKNQRGLNLNYLQGRYLVNIRLKWVKDKDLDTVVSAEKDLKAVCFLVSIIS 66

Query: 83  SSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEA 142
           SSPEHCLPVYHLR HRRQLG+PNDVKMSTFIRRYPSIFHESHILDS GTRVPSFCLTPEA
Sbjct: 67  SSPEHCLPVYHLRRHRRQLGIPNDVKMSTFIRRYPSIFHESHILDSAGTRVPSFCLTPEA 126

Query: 143 RELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYN 202
           RELH E+IIVLRQCWTDLRSRLCRLLMLTS  TLPLQTIDQLRWDMGLPYDYQNSFIPYN
Sbjct: 127 RELHAEQIIVLRQCWTDLRSRLCRLLMLTSGCTLPLQTIDQLRWDMGLPYDYQNSFIPYN 186

Query: 203 HDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGL 262
           HD+FSF+ L+D RIGLKLL WDNDLAVSELQKNAASQQMEEDIRNG LAFPIGFTRGFGL
Sbjct: 187 HDMFSFIRLQDHRIGLKLLKWDNDLAVSELQKNAASQQMEEDIRNGYLAFPIGFTRGFGL 246

Query: 263 RRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 322
            RKCMDWLKEWQ LPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN
Sbjct: 247 NRKCMDWLKEWQTLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 306

Query: 323 LRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM 382
           LRKPFS+PQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKL+QKHPLVSIRERFTSM
Sbjct: 307 LRKPFSLPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLVQKHPLVSIRERFTSM 366

Query: 383 LRKGQLDRSRGLYKKENPFGHFHHHELDETRYSSEEVSDYNLLSEYDSESDGLIDNNC 441
           LRKGQLDRSRGLYKK+ P GHFH+ E++ET YSSEEVSD+N+L EYDSESDGLIDNNC
Sbjct: 367 LRKGQLDRSRGLYKKD-PSGHFHNDEVNETLYSSEEVSDHNMLLEYDSESDGLIDNNC 423

[Close]

BLAST of ClCG08G004110 vs. TrEMBL
Match: A0A0D2PS09_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G127200 PE=4 SV=1)

HSP 1 Score: 556.2 bits (1432), Expect = 3.5e-155
Identity = 281/416 (67.55%), Postives = 324/416 (77.88%), Query Frame = 1


Query: 22  CARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSII 81
           C + K+FGF C  +RG N  Y Q   LVN+KLKWVKDK LD V++ E+DLRA C LVSI+
Sbjct: 7   CGKGKVFGFSCGLRRGFN--YQQTFSLVNVKLKWVKDKALDAVIAGERDLRAACNLVSIL 66

Query: 82  SSSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPE 141
           SS+P+ CLP+YHL  HR QLGLP+D K+STFIRRYP+IFHES++ DS GT VP F LT E
Sbjct: 67  SSAPDFCLPIYHLSRHRGQLGLPHDHKLSTFIRRYPTIFHESYVFDSAGTLVPCFELTLE 126

Query: 142 ARELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPY 201
           A  L+ EE+ V+R    DL  RLC+LLMLT D  LPLQTIDQL+WD+GLPY Y ++ IP 
Sbjct: 127 ALNLYHEELGVIRDNMIDLIDRLCKLLMLTKDRILPLQTIDQLKWDLGLPYFYIDNLIPN 186

Query: 202 NHDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFG 261
             DLFS   L DDRIGLKLLSWD+ LAVS+L+KN A QQ EED++N CLAFPIGFTRGFG
Sbjct: 187 YADLFSLFRLPDDRIGLKLLSWDDTLAVSQLEKNVA-QQTEEDLKNNCLAFPIGFTRGFG 246

Query: 262 LRRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVS 321
           L+RKCM WL+EWQKLPYTSPY DASHLDPRTDVSEKRIVGVFHEL HLT+QKKTERKNVS
Sbjct: 247 LKRKCMGWLEEWQKLPYTSPYADASHLDPRTDVSEKRIVGVFHELFHLTIQKKTERKNVS 306

Query: 322 NLRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTS 381
           NLRKP S+PQKFTKVFERHPGIFYISK  DTQTV+LREAYD  +++Q+HPLV IRERF S
Sbjct: 307 NLRKPLSLPQKFTKVFERHPGIFYISKMSDTQTVVLREAYDCQRIVQRHPLVDIRERFAS 366

Query: 382 MLRKGQLDRSRGLYKKENPFGH------FHHHELDETRYSSEEVSDYNLLSEYDSE 432
           M+RKG  DRSRGLYKK    GH         H+       SE  SD +L SEY+S+
Sbjct: 367 MMRKGFRDRSRGLYKKTAYIGHKDPLKIVQGHKGGGNGLDSEVDSDDDLFSEYNSD 419

[Close]

BLAST of ClCG08G004110 vs. TrEMBL
Match: W9QX20_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009881 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 1.8e-154
Identity = 278/406 (68.47%), Postives = 324/406 (79.80%), Query Frame = 1


Query: 24  RVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISS 83
           +V+  GF CK+Q G +  Y Q   LVN+KLKWVKDK LD  V  EKDL+A C L +IISS
Sbjct: 9   KVESSGFLCKSQSGFS--YQQKCSLVNVKLKWVKDKALDAAVIVEKDLKAACTLATIISS 68

Query: 84  SPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEAR 143
           +P+  LP+YHL CHR QLGLP D+K+STFIRRYPS+F ESH LD+GGTRVP F LT EA 
Sbjct: 69  TPQRRLPIYHLSCHRGQLGLPKDLKLSTFIRRYPSVFLESHFLDTGGTRVPCFGLTHEAV 128

Query: 144 ELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNH 203
           ELHEEE+ ++ Q   DL +RL +LLMLT D TLPLQTIDQL+WD GLPYDYQ+SFIP + 
Sbjct: 129 ELHEEELHLVEQNEMDLLNRLRKLLMLTRDWTLPLQTIDQLKWDFGLPYDYQHSFIPRHP 188

Query: 204 DLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLR 263
           DL SFV L D R+GLKL  WD+D AVSEL KN+ASQ  ++D +N CLAFPIGFTRGFGL+
Sbjct: 189 DLLSFVQLPDKRVGLKLNIWDDDHAVSELLKNSASQPKQQDTKNDCLAFPIGFTRGFGLK 248

Query: 264 RKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNL 323
           RKCM+WLKEWQ+LPYTSPY +AS+LDPRTDVSEKRIVGVFHELLHLT+QKKTERKNVSNL
Sbjct: 249 RKCMEWLKEWQRLPYTSPYSEASYLDPRTDVSEKRIVGVFHELLHLTIQKKTERKNVSNL 308

Query: 324 RKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSML 383
           RKP ++PQKFTKVFERHPGIFYISKK DTQTVILREAYDG  LLQ+H L  IRE+F  ML
Sbjct: 309 RKPLALPQKFTKVFERHPGIFYISKKCDTQTVILREAYDGQNLLQRHSLSEIREKFARML 368

Query: 384 RKGQLDRSRGLYKK-------ENPFGHFHHHELDETRYSSEEVSDY 423
           R+G LD+S+GLYKK       E+P  +  H E+D +  SSEE  +Y
Sbjct: 369 REGLLDKSKGLYKKTRRDDMVEDPLKYECHFEVDSSESSSEEEFEY 412

[Close]

BLAST of ClCG08G004110 vs. TrEMBL
Match: M5XWR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006119mg PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 3.0e-154
Identity = 278/407 (68.30%), Postives = 325/407 (79.85%), Query Frame = 1


Query: 28  FGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEH 87
           FGF    Q G N  + +G  LVN+KLKWVKD+ LD VV+AE+DL+A C LVSIISSSP+ 
Sbjct: 13  FGFLRGCQHGFNYQHKRG--LVNVKLKWVKDRGLDAVVTAERDLKAACILVSIISSSPQC 72

Query: 88  CLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHE 147
           CLP+Y L CHR QL LP D+K+STFIR++PS+F ESH   SGG RVP F LTPEA +L+ 
Sbjct: 73  CLPIYRLSCHRGQLSLPCDLKLSTFIRKFPSVFVESHTFWSGGARVPCFSLTPEALQLYH 132

Query: 148 EEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFS 207
           EE+ VL+Q   DL +RL +LLMLT   TLPLQT+DQL+WD+GLPYDYQ+S IP++ DLFS
Sbjct: 133 EELNVLQQNQMDLINRLQKLLMLTQGWTLPLQTLDQLKWDLGLPYDYQHSVIPHHPDLFS 192

Query: 208 FVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCM 267
           F+ L DDR+GLKLLSWD DLAVS+LQKN+A QQ EED R+GCLAFP+GFTRGFGL+RKCM
Sbjct: 193 FIRLPDDRVGLKLLSWDEDLAVSQLQKNSAIQQKEEDARSGCLAFPVGFTRGFGLKRKCM 252

Query: 268 DWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPF 327
           +WLKEWQ LPYTSPY DAS+LDPRTDVSEKRIVGVFHELL LT+ KKTERKNVSNLRKP 
Sbjct: 253 EWLKEWQTLPYTSPYSDASYLDPRTDVSEKRIVGVFHELLQLTIHKKTERKNVSNLRKPL 312

Query: 328 SMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQ 387
           ++PQKFTKVFERHPGIFYISKK  TQTVILREAY+  +LLQKHP V +RERF  +LRKG 
Sbjct: 313 ALPQKFTKVFERHPGIFYISKKCATQTVILREAYNHQQLLQKHPTVDLRERFARLLRKGL 372

Query: 388 LDRSRGLYKKENPFG---HFHHHELDETRYSSEEVSDYNLLSEYDSE 432
           LDRS+GLYKK    G     H  ++   + SSEE S   L  EYDS+
Sbjct: 373 LDRSKGLYKKSKGDGVEVDPHVDDIGNNQSSSEEESVNKLFYEYDSD 417

[Close]

BLAST of ClCG08G004110 vs. TrEMBL
Match: B9T355_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0050420 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 6.7e-154
Identity = 272/379 (71.77%), Postives = 314/379 (82.85%), Query Frame = 1


Query: 19  ISHCARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLV 78
           +S  +R + F F C+ +RG N  Y Q   LVN+KLKWVKD+ LDT+V+ + DL+A C L 
Sbjct: 4   LSLLSREQGFQFLCRCRRGFN--YQQTFSLVNVKLKWVKDRALDTLVAGQTDLKATCLLT 63

Query: 79  SIISSSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCL 138
           SIISS+P  CLP+YHL  HRRQL LP+D+K+STFIRRYP+IF ESHILDSGGTRVP F L
Sbjct: 64  SIISSAPLCCLPIYHLTPHRRQLCLPHDLKLSTFIRRYPTIFQESHILDSGGTRVPCFQL 123

Query: 139 TPEARELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSF 198
           TPEA  +H+EE  +L+Q   DL  RLC+LLMLT D  LPLQTIDQL+WD+GLPYDY N+ 
Sbjct: 124 TPEASNIHKEEFQILQQNQMDLIQRLCKLLMLTKDRILPLQTIDQLKWDLGLPYDYCNTL 183

Query: 199 IPYNHDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTR 258
           IP + DLFS V L DDRIGLKL  WD+ LAVS+LQKNAA QQ EED+++GCLAFPI FTR
Sbjct: 184 IPNHPDLFSSVRLPDDRIGLKLQMWDDTLAVSQLQKNAAFQQKEEDVKSGCLAFPIRFTR 243

Query: 259 GFGLRRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERK 318
           GFGL+RKCM+WL+EWQ LPYTSPY DASHLDPRTDVSEKRIVGVFHELLHLT+QKKTERK
Sbjct: 244 GFGLKRKCMEWLEEWQSLPYTSPYSDASHLDPRTDVSEKRIVGVFHELLHLTIQKKTERK 303

Query: 319 NVSNLRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRER 378
           NVSNLRK  S+PQKFTKVFERHP IFYIS K DTQTV+LREAYDG +LLQKHPLV IRER
Sbjct: 304 NVSNLRKSLSLPQKFTKVFERHPAIFYISMKCDTQTVVLREAYDGQQLLQKHPLVDIRER 363

Query: 379 FTSMLRKGQLDRSRGLYKK 398
           + S++ +G LDRSRGLYKK
Sbjct: 364 YASLMSRGLLDRSRGLYKK 380

[Close]

BLAST of ClCG08G004110 vs. TAIR10
Match: AT5G48040.1 (AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 454.9 bits (1169), Expect = 5.6e-128
Identity = 244/413 (59.08%), Postives = 296/413 (71.67%), Query Frame = 1


Query: 24  RVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISS 83
           RV L    CK +   +  Y Q   LVN+KLKWVKD+ LD VV  EK LRAVC LVS+IS+
Sbjct: 8   RVSLSTSLCKCRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISA 67

Query: 84  SPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEAR 143
           SP+  LP++ L  HR QLGLP ++K+S FIRRYP+IF E    DS GT VP F LT E  
Sbjct: 68  SPDLRLPIFKLLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSVPCFGLTRETI 127

Query: 144 ELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNH 203
           +L+ EE+ V R    D+  RLC+LLMLT + TL L +ID LRWD+GLPYDY++S I  + 
Sbjct: 128 DLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHP 187

Query: 204 DLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNG-CLAFPIGFTRGFGL 263
           DLFS V L  D  GLKL+ WD  LAVS++Q       + ED+ N   +AFP+ FTRGFGL
Sbjct: 188 DLFSLVKLSSDLDGLKLIHWDEHLAVSQMQ-------LREDVGNDERMAFPVKFTRGFGL 247

Query: 264 RRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 323
           +RK ++WL+EWQ+LPYTSPY DASHLDPRTD+SEKR VGVFHELLHLT+ KKTERKNVSN
Sbjct: 248 KRKSIEWLQEWQRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSN 307

Query: 324 LRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM 383
           LRKPF++PQKFTKVFERHPGIFYIS K DTQTVILREAYD   L++KHPLV +RE+F +M
Sbjct: 308 LRKPFALPQKFTKVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANM 367

Query: 384 LRKGQLDRSRGLYKKENPFGHFHHHELDETRY----SSEEVSDYNLLSEYDSE 432
           + +G LDRSRGLY+K +       + + +T Y      EE  D NL+S YDS+
Sbjct: 368 MNEGFLDRSRGLYQK-SVEADLEKNNI-KTSYPVWSDEEEELDNNLISGYDSD 411

[Close]

BLAST of ClCG08G004110 vs. TAIR10
Match: AT3G58520.1 (AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 262.3 bits (669), Expect = 5.3e-70
Identity = 152/396 (38.38%), Postives = 225/396 (56.82%), Query Frame = 1


Query: 48  LVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQLGLPNDV 107
           +  ++LKWVK+K LD V+  E DL+A C L   I  SP   L    +   ++ LGL   V
Sbjct: 28  MTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLT--V 87

Query: 108 KMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHEEEIIVLRQCWTDLRSRLCRL 167
            +  F+RRYP++FHE     +    +P F LT  A  L  +E I+ +    D   RLCR+
Sbjct: 88  PVLRFLRRYPTLFHE--FPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRV 147

Query: 168 LMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVHLRDDRIGLKLLSWDNDL 227
           LM+    T+ L+++  L++D+GLP +Y+ + +    D F FV   +    LKL+ W ++ 
Sbjct: 148 LMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEF 207

Query: 228 AVSELQKN------AASQQMEEDIRNG--CLAFPIGFTRGFGLRRKCMDWLKEWQKLPYT 287
           A S LQK       +  +    + + G   L FP+ F RG+G ++K   W+ E+QKLPY 
Sbjct: 208 AFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYI 267

Query: 288 SPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVFER 347
           SPY D S++DP +D+ EKR V V HELL LT+ KKT+R  + ++R   ++P KFT++F R
Sbjct: 268 SPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTR 327

Query: 348 HPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLDRSRGL--YKK 407
           +PGIFY+S K  T TVIL+E Y   KL+  HPL  +R++F  ++R G L R+RGL    K
Sbjct: 328 YPGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSK 387

Query: 408 ENPFGHFHHHELDETRYSSEEVSDYNLLSEYDSESD 434
           E         +L+E     EE+ + + L E DSE++
Sbjct: 388 EELLLDRPEDDLEEEGSEEEEIVEGSELEE-DSEAE 418

[Close]

BLAST of ClCG08G004110 vs. TAIR10
Match: AT2G39120.1 (AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-61
Identity = 139/365 (38.08%), Postives = 204/365 (55.89%), Query Frame = 1


Query: 41  NYLQGRYLVNIKLKWVKDKYLDTV--VSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHR 100
           N  Q R  V++ +KW +D Y D +  +     L++V  L + I   P  C+P+  +    
Sbjct: 17  NLTQKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKT 76

Query: 101 RQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHEEEIIVLRQCWT 160
           RQ  +    K++ F+R++PSIF E          +P F LTPEA EL  +E +V +    
Sbjct: 77  RQFDV--STKIAHFLRKFPSIFEE---FVGPEYNLPWFRLTPEATELDRQERVVYQTSAD 136

Query: 161 DLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDL-FSFVHLRDDRIG 220
           DLR RL +L++++ D+ LPL  +  ++W +GLP DY   F   N D  F FV + D   G
Sbjct: 137 DLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQ-FPDMNLDSSFRFVDMEDGVKG 196

Query: 221 LKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKLP 280
           L +     D  +S LQKNA  ++  E +    + FP+  ++G  LR K  DWL E+QKLP
Sbjct: 197 LAVDYNGGDKVLSVLQKNAMKKRRGE-VSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLP 256

Query: 281 YTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVF 340
           Y SPY D S LDP +D++EKR+VG  HELL L ++   ERK +  L+K F +PQK  K F
Sbjct: 257 YVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAF 316

Query: 341 ERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLDRSRGLYKK 400
           ERHP IFY+S K+ T T ILRE Y     ++ HP++ +R+++  +++  +L     L  +
Sbjct: 317 ERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSELI----LKSR 370

Query: 401 ENPFG 403
            N FG
Sbjct: 377 RNSFG 370

[Close]

BLAST of ClCG08G004110 vs. TAIR10
Match: AT4G24320.1 (AT4G24320.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 212.6 bits (540), Expect = 4.8e-55
Identity = 135/356 (37.92%), Postives = 189/356 (53.09%), Query Frame = 1


Query: 44  QGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQLGL 103
           Q R  VN ++KWV D YLD  V  EK+L+ V  L   I SSP   LP+  L   +  + L
Sbjct: 14  QRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNL 73

Query: 104 PNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELH-EEEIIVLRQCWTDLR- 163
              +  + F ++YPS+F       S    V    LTP+A  LH EEE I L     ++  
Sbjct: 74  --HITAAAFFQKYPSVFTTFQPSPSHPLHVR---LTPQALTLHKEEETIHLSPPQRNVTV 133

Query: 164 SRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVHLRDDRIGLKLL 223
            RL + LMLT   +LPL  +D+ R+D+GLP DY  S I    + F    ++D   G K L
Sbjct: 134 QRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTL 193

Query: 224 -----SWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKL 283
                S  N+L VSE+++  A+       +   + + + F +G+ L ++  +W+++WQ L
Sbjct: 194 ALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVEQWQNL 253

Query: 284 PYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKV 343
           PY SPY +A HL   +D +EK  V V HELL L + KKTE  NV  L +      +F K 
Sbjct: 254 PYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKKA 313

Query: 344 FERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLDRSR 393
              HPGIFY+S K  TQTV+LREAY    LL+KHPL+ IR ++  ++ K    + R
Sbjct: 314 LVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKKR 364

[Close]

BLAST of ClCG08G004110 vs. TAIR10
Match: AT1G71850.1 (AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-53
Identity = 118/340 (34.71%), Postives = 185/340 (54.41%), Query Frame = 1


Query: 54  KWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQLGLPNDVKMSTFI 113
           K+V+D+ LD  V  EK+LR +  +  +I S P   +P+  +   +  L +P  ++   FI
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVP--LRPIEFI 89

Query: 114 RRYPSIFHESHILDSGGTRVPSFCLTPEARELHEEEIIVL--RQCWTDLRSRLCRLLMLT 173
           R +PS+F E   L  G    P   LTPE      +E +V         L  RL +LLM+ 
Sbjct: 90  RSFPSVFQE--FLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMIN 149

Query: 174 SDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVH--LRDDRIGLKLLSWDNDLAV 233
             + +PL+ +D L+WD+GLP DY  + +P   D F  +   LR     L+L+ W N+ AV
Sbjct: 150 RINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNEHAV 209

Query: 234 SELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKLPYTSPYCDASHLD 293
           S L+K A + +  E  +   +AFP+ F+ GF + +K   W+ +WQKLPY SPY +A HL 
Sbjct: 210 SVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENALHLS 269

Query: 294 PRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVFERHPGIFYISKK 353
             +D S+K    V HE+++L + KK E+  + +L +   +  +F +V   HPGIFY+S K
Sbjct: 270 ATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYLSSK 329

Query: 354 DDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLD 390
             T TV+LR+ Y    L++ + LV+ R R+  ++   + D
Sbjct: 330 LRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKD 365

[Close]

BLAST of ClCG08G004110 vs. NCBI nr
Match: gi|659089626|ref|XP_008445613.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 796.2 bits (2055), Expect = 2.9e-227
Identity = 385/418 (92.11%), Postives = 403/418 (96.41%), Query Frame = 1


Query: 23  ARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIIS 82
           +R+KLFGF CKNQ GL+LNYLQGR LVNIKLKWVKDK LDTVVSAEKDL+AVCFLVSIIS
Sbjct: 7   SRLKLFGFSCKNQTGLSLNYLQGRCLVNIKLKWVKDKDLDTVVSAEKDLKAVCFLVSIIS 66

Query: 83  SSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEA 142
           SSPE+CLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDS GTRVPSFCLTPEA
Sbjct: 67  SSPENCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSAGTRVPSFCLTPEA 126

Query: 143 RELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYN 202
           RELHEE+I+VLRQCWTDLRSRLCRLLMLTS  TLPLQTIDQLRWDMGLPYDYQNSF+PYN
Sbjct: 127 RELHEEQIVVLRQCWTDLRSRLCRLLMLTSGCTLPLQTIDQLRWDMGLPYDYQNSFVPYN 186

Query: 203 HDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGL 262
           HDLFSF+ L+DDRIGLKLL WDNDLAVSELQKNAASQQMEEDIRNG LAFPIGFTRGFGL
Sbjct: 187 HDLFSFIRLQDDRIGLKLLLWDNDLAVSELQKNAASQQMEEDIRNGYLAFPIGFTRGFGL 246

Query: 263 RRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 322
            RKCMDWLK+WQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN
Sbjct: 247 NRKCMDWLKDWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 306

Query: 323 LRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM 382
           LRKPFS+PQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM
Sbjct: 307 LRKPFSLPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM 366

Query: 383 LRKGQLDRSRGLYKKENPFGHFHHHELDETRYSSEEVSDYNLLSEYDSESDGLIDNNC 441
           LRKGQLDRSRGLYKK+ P GH +H E++ETRYSSEEVSD+N+LSEYDSESDGLIDNNC
Sbjct: 367 LRKGQLDRSRGLYKKD-PSGHVYHDEVNETRYSSEEVSDHNMLSEYDSESDGLIDNNC 423

[Close]

BLAST of ClCG08G004110 vs. NCBI nr
Match: gi|449441530|ref|XP_004138535.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 786.9 bits (2031), Expect = 1.8e-224
Identity = 382/418 (91.39%), Postives = 399/418 (95.45%), Query Frame = 1


Query: 23  ARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIIS 82
           +R+KL GF CKNQRGLNLNYLQGRYLVNI+LKWVKDK LDTVVSAEKDL+AVCFLVSIIS
Sbjct: 7   SRLKLSGFLCKNQRGLNLNYLQGRYLVNIRLKWVKDKDLDTVVSAEKDLKAVCFLVSIIS 66

Query: 83  SSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEA 142
           SSPEHCLPVYHLR HRRQLG+PNDVKMSTFIRRYPSIFHESHILDS GTRVPSFCLTPEA
Sbjct: 67  SSPEHCLPVYHLRRHRRQLGIPNDVKMSTFIRRYPSIFHESHILDSAGTRVPSFCLTPEA 126

Query: 143 RELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYN 202
           RELH E+IIVLRQCWTDLRSRLCRLLMLTS  TLPLQTIDQLRWDMGLPYDYQNSFIPYN
Sbjct: 127 RELHAEQIIVLRQCWTDLRSRLCRLLMLTSGCTLPLQTIDQLRWDMGLPYDYQNSFIPYN 186

Query: 203 HDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGL 262
           HD+FSF+ L+D RIGLKLL WDNDLAVSELQKNAASQQMEEDIRNG LAFPIGFTRGFGL
Sbjct: 187 HDMFSFIRLQDHRIGLKLLKWDNDLAVSELQKNAASQQMEEDIRNGYLAFPIGFTRGFGL 246

Query: 263 RRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 322
            RKCMDWLKEWQ LPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN
Sbjct: 247 NRKCMDWLKEWQTLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSN 306

Query: 323 LRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSM 382
           LRKPFS+PQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKL+QKHPLVSIRERFTSM
Sbjct: 307 LRKPFSLPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLVQKHPLVSIRERFTSM 366

Query: 383 LRKGQLDRSRGLYKKENPFGHFHHHELDETRYSSEEVSDYNLLSEYDSESDGLIDNNC 441
           LRKGQLDRSRGLYKK+ P GHFH+ E++ET YSSEEVSD+N+L EYDSESDGLIDNNC
Sbjct: 367 LRKGQLDRSRGLYKKD-PSGHFHNDEVNETLYSSEEVSDHNMLLEYDSESDGLIDNNC 423

[Close]

BLAST of ClCG08G004110 vs. NCBI nr
Match: gi|470121303|ref|XP_004296715.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 558.5 bits (1438), Expect = 1.0e-155
Identity = 274/398 (68.84%), Postives = 325/398 (81.66%), Query Frame = 1


Query: 41  NYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEHCLPVYHLRCHRRQ 100
           N+ Q R LVN+KLKWVKD+ LD VV+AE+DL+A C LVSIISSS   CLP+YHL CHR Q
Sbjct: 22  NHKQKRNLVNVKLKWVKDRALDAVVTAERDLKAACVLVSIISSSSHGCLPIYHLSCHRGQ 81

Query: 101 LGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHEEEIIVLRQCWTDL 160
           L LP ++K+STFIRRYPS+F ESH+ DSGGTRVP F LTPEA +LH+EE  +++Q   D+
Sbjct: 82  LNLPYELKVSTFIRRYPSVFLESHVHDSGGTRVPCFSLTPEAIKLHQEESNLVQQNQIDI 141

Query: 161 RSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFSFVHLRDDRIGLKL 220
            +RL +LLMLT    LPLQTIDQL+WD+GLPYDYQ+S IP++ DLFSF+ L DDR+GLKL
Sbjct: 142 LNRLRKLLMLTRGWKLPLQTIDQLKWDIGLPYDYQHSVIPHHPDLFSFISLPDDRVGLKL 201

Query: 221 LSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCMDWLKEWQKLPYTS 280
           LSWD+DLAVS+LQKN+A QQ +ED+RNGCLAFPIGFTRGFGL+RKCM+WLKEWQ LPY S
Sbjct: 202 LSWDDDLAVSQLQKNSAIQQEKEDMRNGCLAFPIGFTRGFGLKRKCMEWLKEWQSLPYNS 261

Query: 281 PYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPFSMPQKFTKVFERH 340
           PY D SH+DPRTD SEKR+VGVFHELLHLT+QKKTERKNVSNLRKP ++PQKFTKVFERH
Sbjct: 262 PYYDTSHIDPRTDESEKRVVGVFHELLHLTIQKKTERKNVSNLRKPLALPQKFTKVFERH 321

Query: 341 PGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQLDRSRGLYKKE-- 400
           PGIFYISKK DTQTVILREAYD  +LLQKHP   +RE+F  +LRKG LDRS GLYKK   
Sbjct: 322 PGIFYISKKCDTQTVILREAYDHQQLLQKHPTAELREKFAMLLRKGLLDRSNGLYKKSPG 381

Query: 401 -----NPFGHFHHHELDETRYSSEEVSDYNLLSEYDSE 432
                +P  H     + + R S +E S+ +LLSEY+S+
Sbjct: 382 DVSEVDPLKHNIVDNISDYRSSFKEDSENDLLSEYESD 419

[Close]

BLAST of ClCG08G004110 vs. NCBI nr
Match: gi|823157014|ref|XP_012478417.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Gossypium raimondii])

HSP 1 Score: 556.2 bits (1432), Expect = 5.1e-155
Identity = 281/416 (67.55%), Postives = 324/416 (77.88%), Query Frame = 1


Query: 22  CARVKLFGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSII 81
           C + K+FGF C  +RG N  Y Q   LVN+KLKWVKDK LD V++ E+DLRA C LVSI+
Sbjct: 7   CGKGKVFGFSCGLRRGFN--YQQTFSLVNVKLKWVKDKALDAVIAGERDLRAACNLVSIL 66

Query: 82  SSSPEHCLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPE 141
           SS+P+ CLP+YHL  HR QLGLP+D K+STFIRRYP+IFHES++ DS GT VP F LT E
Sbjct: 67  SSAPDFCLPIYHLSRHRGQLGLPHDHKLSTFIRRYPTIFHESYVFDSAGTLVPCFELTLE 126

Query: 142 ARELHEEEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPY 201
           A  L+ EE+ V+R    DL  RLC+LLMLT D  LPLQTIDQL+WD+GLPY Y ++ IP 
Sbjct: 127 ALNLYHEELGVIRDNMIDLIDRLCKLLMLTKDRILPLQTIDQLKWDLGLPYFYIDNLIPN 186

Query: 202 NHDLFSFVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFG 261
             DLFS   L DDRIGLKLLSWD+ LAVS+L+KN A QQ EED++N CLAFPIGFTRGFG
Sbjct: 187 YADLFSLFRLPDDRIGLKLLSWDDTLAVSQLEKNVA-QQTEEDLKNNCLAFPIGFTRGFG 246

Query: 262 LRRKCMDWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVS 321
           L+RKCM WL+EWQKLPYTSPY DASHLDPRTDVSEKRIVGVFHEL HLT+QKKTERKNVS
Sbjct: 247 LKRKCMGWLEEWQKLPYTSPYADASHLDPRTDVSEKRIVGVFHELFHLTIQKKTERKNVS 306

Query: 322 NLRKPFSMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTS 381
           NLRKP S+PQKFTKVFERHPGIFYISK  DTQTV+LREAYD  +++Q+HPLV IRERF S
Sbjct: 307 NLRKPLSLPQKFTKVFERHPGIFYISKMSDTQTVVLREAYDCQRIVQRHPLVDIRERFAS 366

Query: 382 MLRKGQLDRSRGLYKKENPFGH------FHHHELDETRYSSEEVSDYNLLSEYDSE 432
           M+RKG  DRSRGLYKK    GH         H+       SE  SD +L SEY+S+
Sbjct: 367 MMRKGFRDRSRGLYKKTAYIGHKDPLKIVQGHKGGGNGLDSEVDSDDDLFSEYNSD 419

[Close]

BLAST of ClCG08G004110 vs. NCBI nr
Match: gi|645231844|ref|XP_008222589.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Prunus mume])

HSP 1 Score: 555.4 bits (1430), Expect = 8.6e-155
Identity = 279/407 (68.55%), Postives = 325/407 (79.85%), Query Frame = 1


Query: 28  FGFPCKNQRGLNLNYLQGRYLVNIKLKWVKDKYLDTVVSAEKDLRAVCFLVSIISSSPEH 87
           FGF    Q G N  + +G  LVN+KLKWVKD+ LD VV+A +DL+A C LVSIISSSP+ 
Sbjct: 13  FGFFRGCQHGFNYQHKRG--LVNVKLKWVKDRGLDAVVTAARDLKAACILVSIISSSPQC 72

Query: 88  CLPVYHLRCHRRQLGLPNDVKMSTFIRRYPSIFHESHILDSGGTRVPSFCLTPEARELHE 147
           CLP+Y L CHR QL LP D+K+STFIR++PS+F ESH   SGG RVP F LTPEA +L+ 
Sbjct: 73  CLPIYRLSCHRGQLSLPCDLKLSTFIRKFPSVFVESHTFWSGGARVPCFSLTPEALQLYH 132

Query: 148 EEIIVLRQCWTDLRSRLCRLLMLTSDSTLPLQTIDQLRWDMGLPYDYQNSFIPYNHDLFS 207
           EE+ VL+Q   DL +RL +LLMLT   TLPLQT+DQL+WD+GLPYDYQ+S IP++ DLFS
Sbjct: 133 EELNVLQQNQVDLINRLQKLLMLTQGWTLPLQTLDQLKWDLGLPYDYQHSVIPHHPDLFS 192

Query: 208 FVHLRDDRIGLKLLSWDNDLAVSELQKNAASQQMEEDIRNGCLAFPIGFTRGFGLRRKCM 267
           F+ L DDR+GLKLLSWD DLAVS+LQKN+A QQ EED R+GCLAFP+GFTRGFGL+RKCM
Sbjct: 193 FIRLPDDRVGLKLLSWDEDLAVSQLQKNSAIQQKEEDARSGCLAFPVGFTRGFGLKRKCM 252

Query: 268 DWLKEWQKLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKTERKNVSNLRKPF 327
           +WLKEWQ LPYTSPY DASHLDPRTDVSEKRIVGVFHELL LT+ KKTERKNVSNLRKP 
Sbjct: 253 EWLKEWQTLPYTSPYSDASHLDPRTDVSEKRIVGVFHELLQLTIHKKTERKNVSNLRKPL 312

Query: 328 SMPQKFTKVFERHPGIFYISKKDDTQTVILREAYDGDKLLQKHPLVSIRERFTSMLRKGQ 387
           ++PQKFTKVFERHPGIFYISKK  TQTVILREAY+  +LLQKHP V +RERF  +LRKG 
Sbjct: 313 ALPQKFTKVFERHPGIFYISKKCATQTVILREAYNHQQLLQKHPTVDLRERFARLLRKGL 372

Query: 388 LDRSRGLYKKENPFG---HFHHHELDETRYSSEEVSDYNLLSEYDSE 432
           LDRS+GLYKK    G     H  ++   + SSEE S  NL  EYDS+
Sbjct: 373 LDRSKGLYKKSKGDGVEVDPHVDDIGNNQSSSEEESVNNLFYEYDSD 417

The following BLAST results are available for this feature:

BLAST of ClCG08G004110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPD1_ARATH	1.2e-26	27.78	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1	[more]

BLAST of ClCG08G004110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAR1_CUCSA	1.2e-224	91.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022360 PE=4 SV=1	[more]
A0A0D2PS09_GOSRA	3.5e-155	67.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G127200 PE=4 SV=1	[more]
W9QX20_9ROSA	1.8e-154	68.47	Uncharacterized protein OS=Morus notabilis GN=L484_009881 PE=4 SV=1	[more]
M5XWR3_PRUPE	3.0e-154	68.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006119mg PE=4 SV=1	[more]
B9T355_RICCO	6.7e-154	71.77	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0050420 PE=4 SV=1	[more]

BLAST of ClCG08G004110 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48040.1	5.6e-128	59.08	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	5.3e-70	38.38	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	2.0e-61	38.08	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	4.8e-55	37.92	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G71850.1	7.7e-53	34.71	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of ClCG08G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089626\|ref\|XP_008445613.1\|	2.9e-227	92.11	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]
gi\|449441530\|ref\|XP_004138535.1\|	1.8e-224	91.39	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus]	[more]
gi\|470121303\|ref\|XP_004296715.1\|	1.0e-155	68.84	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Fragaria vesca subsp. vesca]	[more]
gi\|823157014\|ref\|XP_012478417.1\|	5.1e-155	67.55	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Gossypium raimondii]	[more]
gi\|645231844\|ref\|XP_008222589.1\|	8.6e-155	68.55	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G004110.1	ClCG08G004110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 56..386 score: 8.9E
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 23..431 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G004110	Cla007187	Watermelon (97103) v1	wcgwmB409
ClCG08G004110	Cla97C08G147400	Watermelon (97103) v2	wcgwmbB336
ClCG08G004110	Bhi04G001669	Wax gourd	wcgwgoB632
ClCG08G004110	CmaCh17G005850	Cucurbita maxima (Rimu)	cmawcgB335
ClCG08G004110	CmoCh17G005680	Cucurbita moschata (Rifu)	cmowcgB332
ClCG08G004110	Lsi08G003350	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G004110	Cp4.1LG12g05010	Cucurbita pepo (Zucchini)	cpewcgB151
ClCG08G004110	Carg22617	Silver-seed gourd	carwcgB0215

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G004110	Cucurbita pepo (Zucchini)	cpewcgB310
ClCG08G004110	Cucurbita pepo (Zucchini)	cpewcgB311
ClCG08G004110	Melon (DHL92) v3.6.1	medwcgB299
ClCG08G004110	Silver-seed gourd	carwcgB0086
ClCG08G004110	Silver-seed gourd	carwcgB0087
ClCG08G004110	Cucurbita maxima (Rimu)	cmawcgB814
ClCG08G004110	Cucurbita maxima (Rimu)	cmawcgB815
ClCG08G004110	Cucurbita moschata (Rifu)	cmowcgB810
ClCG08G004110	Cucurbita moschata (Rifu)	cmowcgB811