ClCG06G004060 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G004060
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 4636696 .. 4636962 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGTAAATTTCACGTCGGCATCCTTCGAAATTTGAGCCAATAAGGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

mRNA sequence

ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

Coding sequence (CDS)

ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

Protein sequence

MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQRRGCFHKRFKVRELDEEHGGGNVKNEGEGE
Homology
[Close]
BLAST of ClCG06G004060 vs. TrEMBL
Match: A0A0A0K829_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQR--------------R 56
          ME FKGNLGT IMI  KVGE+S RQL+RC E RGTVR +Y E QR               
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

[Close]
BLAST of ClCG06G004060 vs. NCBI nr
Match: gi|700190429|gb|KGN45633.1| (hypothetical protein Csa_6G002280 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQR--------------R 56
          ME FKGNLGT IMI  KVGE+S RQL+RC E RGTVR +Y E QR               
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

The following BLAST results are available for this feature:
BLAST of ClCG06G004060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K829_CUCSA2.4e-0853.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1[more]
BLAST of ClCG06G004060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190429|gb|KGN45633.1|3.5e-0853.62hypothetical protein Csa_6G002280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G004060.1ClCG06G004060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G004060Csa6G002280Cucumber (Chinese Long) v2cuwcgB480
ClCG06G004060CSPI06G00260Wild cucumber (PI 183967)cpiwcgB507
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G004060Cucurbita maxima (Rimu)cmawcgB328
ClCG06G004060Cucurbita maxima (Rimu)cmawcgB800
ClCG06G004060Cucurbita moschata (Rifu)cmowcgB325
ClCG06G004060Melon (DHL92) v3.5.1mewcgB124
ClCG06G004060Watermelon (97103) v1wcgwmB344
ClCG06G004060Cucurbita pepo (Zucchini)cpewcgB144
ClCG06G004060Bottle gourd (USVL1VR-Ls)lsiwcgB029
ClCG06G004060Cucumber (Gy14) v2cgybwcgB443
ClCG06G004060Melon (DHL92) v3.6.1medwcgB119
ClCG06G004060Silver-seed gourdcarwcgB0073
ClCG06G004060Cucumber (Chinese Long) v3cucwcgB502
ClCG06G004060Watermelon (97103) v2wcgwmbB273
ClCG06G004060Watermelon (97103) v2wcgwmbB274
ClCG06G004060Wax gourdwcgwgoB504
ClCG06G004060Cucumber (Gy14) v1cgywcgB228