CSPI06G00260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G00260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 247696 .. 247917 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA

mRNA sequence

ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA

Coding sequence (CDS)

ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA
Homology
[Close]
BLAST of CSPI06G00260 vs. TrEMBL
Match: A0A0A0K829_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.6e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60
          MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

Query: 61 GCINERFKLLKPY 74
          GCINERFKLLKPY
Sbjct: 61 GCINERFKLLKPY 73

[Close]
BLAST of CSPI06G00260 vs. NCBI nr
Match: gi|700190429|gb|KGN45633.1| (hypothetical protein Csa_6G002280 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60
          MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

Query: 61 GCINERFKLLKPY 74
          GCINERFKLLKPY
Sbjct: 61 GCINERFKLLKPY 73

The following BLAST results are available for this feature:
BLAST of CSPI06G00260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G00260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K829_CUCSA5.6e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1[more]
BLAST of CSPI06G00260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G00260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190429|gb|KGN45633.1|8.0e-37100.00hypothetical protein Csa_6G002280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00260.1CSPI06G00260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G00260Csa6G002280Cucumber (Chinese Long) v2cpicuB314
CSPI06G00260ClCG06G004060Watermelon (Charleston Gray)cpiwcgB507
CSPI06G00260CsaV3_6G000320Cucumber (Chinese Long) v3cpicucB364
CSPI06G00260CsGy6G000320Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G00260Watermelon (97103) v2cpiwmbB499
CSPI06G00260Cucumber (Gy14) v1cgycpiB198
CSPI06G00260Cucurbita maxima (Rimu)cmacpiB372
CSPI06G00260Cucurbita moschata (Rifu)cmocpiB360
CSPI06G00260Melon (DHL92) v3.5.1cpimeB418
CSPI06G00260Watermelon (97103) v1cpiwmB565
CSPI06G00260Cucurbita pepo (Zucchini)cpecpiB143
CSPI06G00260Bottle gourd (USVL1VR-Ls)cpilsiB397
CSPI06G00260Melon (DHL92) v3.6.1cpimedB413
CSPI06G00260Silver-seed gourdcarcpiB0077