ClCG06G004060.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG06G004060.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 4636696 .. 4636962 (-)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGTAAATTTCACGTCGGCATCCTTCGAAATTTGAGCCAATAAGGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

mRNA sequence

ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

Coding sequence (CDS)

ATGGAAGGATTCAAGGGAAACCTTGGAACTGTGATCATGATTGACGGAAAAGTTGGTGAAGAATCGATCCGACAATTGGAGCGTTGCAAAGAAGCGAGGGGAACGGTTCGAGACAATTATGTAGAGCTTCAACGGCGAGGTTGCTTCCATAAGAGGTTCAAAGTCCGTGAGCTTGACGAAGAACATGGTGGTGGTAATGTGAAAAATGAAGGGGAAGGAGAATGA

Protein sequence

MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQRRGCFHKRFKVRELDEEHGGGNVKNEGEGE
Homology
[Close]
BLAST of ClCG06G004060.1 vs. TrEMBL
Match: A0A0A0K829_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQR--------------R 56
          ME FKGNLGT IMI  KVGE+S RQL+RC E RGTVR +Y E QR               
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

[Close]
BLAST of ClCG06G004060.1 vs. NCBI nr
Match: gi|700190429|gb|KGN45633.1| (hypothetical protein Csa_6G002280 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MEGFKGNLGTVIMIDGKVGEESIRQLERCKEARGTVRDNYVELQR--------------R 56
          ME FKGNLGT IMI  KVGE+S RQL+RC E RGTVR +Y E QR               
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

The following BLAST results are available for this feature:
BLAST of ClCG06G004060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K829_CUCSA2.4e-0853.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002280 PE=4 SV=1[more]
BLAST of ClCG06G004060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190429|gb|KGN45633.1|3.5e-0853.62hypothetical protein Csa_6G002280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG06G004060ClCG06G004060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG06G004060.1ClCG06G004060.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG06G004060.1.cds2ClCG06G004060.1.cds2CDS
ClCG06G004060.1.cds1ClCG06G004060.1.cds1CDS