ClCG05G011220 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011220
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 13225313 .. 13225642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

mRNA sequence

ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Coding sequence (CDS)

ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Protein sequence

MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQTAAAGPWTQCNSLDEDIDMNTAFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRNFPR

Homology

[Close]

BLAST of ClCG05G011220 vs. TrEMBL
Match: A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 1   MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDIDMN 60
           MVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED ++ 
Sbjct: 19  MVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDNIE 78

Query: 61  T-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 107
           T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 79  TSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

[Close]

BLAST of ClCG05G011220 vs. NCBI nr
Match: gi|700202681|gb|KGN57814.1| (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 1   MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDIDMN 60
           MVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED ++ 
Sbjct: 19  MVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDNIE 78

Query: 61  T-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 107
           T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 79  TSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

The following BLAST results are available for this feature:

BLAST of ClCG05G011220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA12_CUCSA	1.4e-07	45.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1	[more]

BLAST of ClCG05G011220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202681\|gb\|KGN57814.1\|	2.0e-07	45.22	hypothetical protein Csa_3G316270 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011220.1	ClCG05G011220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G011220	Cla013191	Watermelon (97103) v1	wcgwmB286
ClCG05G011220	Cla97C05G093400	Watermelon (97103) v2	wcgwmbB229
ClCG05G011220	Bhi01G001512	Wax gourd	wcgwgoB441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011220	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011220	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011220	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G011220	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G011220	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G011220	Silver-seed gourd	carwcgB0497
ClCG05G011220	Silver-seed gourd	carwcgB0739
ClCG05G011220	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G011220	Cucumber (Gy14) v1	cgywcgB640
ClCG05G011220	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011220	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011220	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011220	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011220	Wild cucumber (PI 183967)	cpiwcgB240
ClCG05G011220	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011220	Melon (DHL92) v3.5.1	mewcgB427