Cla013191 (gene) Watermelon (97103) v1

Overview
NameCla013191
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 12572825 .. 12573166 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

mRNA sequence

ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Coding sequence (CDS)

ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Protein sequence

MATTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQTAAAGPWTQCNSLDEDIDMNTAFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRNFPR
Homology
[Close]
BLAST of Cla013191 vs. TrEMBL
Match: A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-09
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 3   TTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDID 62
           TTMVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED +
Sbjct: 17  TTMVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDN 76

Query: 63  MNT-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 111
           + T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 77  IETSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

[Close]
BLAST of Cla013191 vs. NCBI nr
Match: gi|700202681|gb|KGN57814.1| (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 3   TTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDID 62
           TTMVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED +
Sbjct: 17  TTMVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDN 76

Query: 63  MNT-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 111
           + T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 77  IETSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

The following BLAST results are available for this feature:
BLAST of Cla013191 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA12_CUCSA9.8e-0946.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1[more]
BLAST of Cla013191 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202681|gb|KGN57814.1|1.4e-0846.15hypothetical protein Csa_3G316270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013191Cla013191.1mRNA