ClCG05G011220.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G011220.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 13225313 .. 13225642 (+)
Sequence length330
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

mRNA sequence

ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Coding sequence (CDS)

ATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Protein sequence

MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQTAAAGPWTQCNSLDEDIDMNTAFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRNFPR
Homology
[Close]
BLAST of ClCG05G011220.1 vs. TrEMBL
Match: A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1 

Query: 1   MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDIDMN 60
           MVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED ++ 
Sbjct: 19  MVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDNIE 78

Query: 61  T-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 107
           T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 79  TSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

[Close]
BLAST of ClCG05G011220.1 vs. NCBI nr
Match: gi|700202681|gb|KGN57814.1| (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1 

Query: 1   MVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDIDMN 60
           MVAVA+ ++V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED ++ 
Sbjct: 19  MVAVAI-IVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDNIE 78

Query: 61  T-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 107
           T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 79  TSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

The following BLAST results are available for this feature:
BLAST of ClCG05G011220.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA12_CUCSA1.4e-0745.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1[more]
BLAST of ClCG05G011220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202681|gb|KGN57814.1|2.0e-0745.22hypothetical protein Csa_3G316270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G011220ClCG05G011220gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G011220.1ClCG05G011220.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G011220.1.cds1ClCG05G011220.1.cds1CDS