ClCG05G010370 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G010370
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 11484631 .. 11484930 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

mRNA sequence

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Coding sequence (CDS)

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Protein sequence

MPMHFMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWGPSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL
Homology
[Close]
BLAST of ClCG05G010370 vs. TrEMBL
Match: A0A0A0L6A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

[Close]
BLAST of ClCG05G010370 vs. NCBI nr
Match: gi|700202357|gb|KGN57490.1| (hypothetical protein Csa_3G199030 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

The following BLAST results are available for this feature:
BLAST of ClCG05G010370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6A7_CUCSA1.4e-0642.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1[more]
BLAST of ClCG05G010370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202357|gb|KGN57490.1|2.0e-0642.11hypothetical protein Csa_3G199030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G010370.1ClCG05G010370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G010370Cla013106Watermelon (97103) v1wcgwmB286
ClCG05G010370CsaV3_3G018120Cucumber (Chinese Long) v3cucwcgB238
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G010370Watermelon (97103) v2wcgwmbB224
ClCG05G010370Watermelon (97103) v2wcgwmbB229
ClCG05G010370Wax gourdwcgwgoB427
ClCG05G010370Watermelon (Charleston Gray)wcgwcgB097
ClCG05G010370Watermelon (Charleston Gray)wcgwcgB130
ClCG05G010370Cucumber (Gy14) v1cgywcgB153
ClCG05G010370Cucumber (Gy14) v1cgywcgB397
ClCG05G010370Cucurbita maxima (Rimu)cmawcgB297
ClCG05G010370Cucurbita maxima (Rimu)cmawcgB465
ClCG05G010370Cucurbita maxima (Rimu)cmawcgB659
ClCG05G010370Cucurbita moschata (Rifu)cmowcgB291
ClCG05G010370Cucurbita moschata (Rifu)cmowcgB464
ClCG05G010370Cucurbita moschata (Rifu)cmowcgB660
ClCG05G010370Wild cucumber (PI 183967)cpiwcgB237
ClCG05G010370Wild cucumber (PI 183967)cpiwcgB586
ClCG05G010370Cucumber (Chinese Long) v2cuwcgB230
ClCG05G010370Cucumber (Chinese Long) v2cuwcgB556
ClCG05G010370Melon (DHL92) v3.5.1mewcgB209
ClCG05G010370Melon (DHL92) v3.5.1mewcgB427
ClCG05G010370Melon (DHL92) v3.5.1mewcgB540
ClCG05G010370Watermelon (97103) v1wcgwmB305
ClCG05G010370Cucurbita pepo (Zucchini)cpewcgB208
ClCG05G010370Cucurbita pepo (Zucchini)cpewcgB394
ClCG05G010370Bottle gourd (USVL1VR-Ls)lsiwcgB242
ClCG05G010370Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G010370Cucumber (Gy14) v2cgybwcgB214
ClCG05G010370Melon (DHL92) v3.6.1medwcgB203
ClCG05G010370Melon (DHL92) v3.6.1medwcgB417
ClCG05G010370Melon (DHL92) v3.6.1medwcgB537
ClCG05G010370Silver-seed gourdcarwcgB0289
ClCG05G010370Silver-seed gourdcarwcgB0370
ClCG05G010370Cucumber (Chinese Long) v3cucwcgB584