ClCG05G010370.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G010370.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 11484631 .. 11484930 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

mRNA sequence

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Coding sequence (CDS)

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCTCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Protein sequence

MPMHFMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWGPSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL
Homology
[Close]
BLAST of ClCG05G010370.1 vs. TrEMBL
Match: A0A0A0L6A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

[Close]
BLAST of ClCG05G010370.1 vs. NCBI nr
Match: gi|700202357|gb|KGN57490.1| (hypothetical protein Csa_3G199030 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

The following BLAST results are available for this feature:
BLAST of ClCG05G010370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6A7_CUCSA1.4e-0642.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1[more]
BLAST of ClCG05G010370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202357|gb|KGN57490.1|2.0e-0642.11hypothetical protein Csa_3G199030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G010370ClCG05G010370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G010370.1ClCG05G010370.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G010370.1.cds1ClCG05G010370.1.cds1CDS