CsaV3_3G018120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018120
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 13877313 .. 13877597 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAA

mRNA sequence

ATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAA

Coding sequence (CDS)

ATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAA

Protein sequence

MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGDLQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI
Homology
[Close]
BLAST of CsaV3_3G018120 vs. NCBI nr
Match: KGN57490.1 (hypothetical protein Csa_3G199030 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60
          MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD
Sbjct: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60

Query: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 95
          LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI
Sbjct: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 94

[Close]
BLAST of CsaV3_3G018120 vs. NCBI nr
Match: XP_022922828.1 (uncharacterized protein LOC111430694 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 35/77 (45.45%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYN--WTDP---------D 60
          MV FGPQ   NS MAAC+     + +     +    AG +V YN  W  P         +
Sbjct: 10 MVLFGPQCNVNSCMAACRCTWRSLLIS--TAHNLSLAGGVVSYNLDWPPPASFDKNLSGN 69

Query: 61 PKYYLLFSNGDLQTPSL 67
          PKYYLLF+NGDLQTPSL
Sbjct: 70 PKYYLLFNNGDLQTPSL 84

[Close]
BLAST of CsaV3_3G018120 vs. TrEMBL
Match: tr|A0A0A0L6A7|A0A0A0L6A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199030 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60
          MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD
Sbjct: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60

Query: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 95
          LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI
Sbjct: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 94

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57490.11.1e-50100.00hypothetical protein Csa_3G199030 [Cucumis sativus][more]
XP_022922828.14.8e-0645.45uncharacterized protein LOC111430694 [Cucurbita moschata][more]
BLAST of CsaV3_3G018120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018120 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6A7|A0A0A0L6A7_CUCSA7.2e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199030 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018120.1CsaV3_3G018120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018120CSPI03G18070Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018120Cla013106Watermelon (97103) v1cucwmB252
CsaV3_3G018120ClCG05G010370Watermelon (Charleston Gray)cucwcgB238
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018120Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018120Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018120Silver-seed gourdcarcucB0326
CsaV3_3G018120Silver-seed gourdcarcucB0403
CsaV3_3G018120Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018120Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018120Cucumber (Gy14) v1cgycucB123
CsaV3_3G018120Cucumber (Gy14) v1cgycucB137
CsaV3_3G018120Cucumber (Gy14) v1cgycucB338
CsaV3_3G018120Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018120Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018120Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018120Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018120Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018120Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018120Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018120Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018120Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018120Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018120Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018120Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018120Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018120Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018120Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018120Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018120Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018120Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018120Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018120Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018120Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018120Watermelon (97103) v1cucwmB279
CsaV3_3G018120Watermelon (97103) v2cucwmbB201
CsaV3_3G018120Watermelon (97103) v2cucwmbB217
CsaV3_3G018120Wax gourdcucwgoB287