ClCG04G006170 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G006170
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Location	CG_Chr04 : 20578820 .. 20583688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGAACCTCCGAGATTTTCAACAGCAGAGAGAAAAAATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGGTAATTTACTTTGTACTGCTTTTGATTTTAGCGTTTTCCCCTTTTCTTTGCTCAATGGATCTCCTTTCTCCGAGTTCCGATCAACGATCTCTGGAATTAGTTTTCGGATTTTGATTTCTGTTGTTCGTCGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAATTTTTTCTCCCGACCTGCATCCCCTGGTACACGTTTATGCGTTCTTATTACTGTTTTTCCGTTTCTAGGAATGTTAATATTGGGGGTATGAAACTTTTAGGAAAAATCATCTTTCTTGGTGCGTGGTTGTTCTATCTCTTGGACTTGGAGAATGTTGAATTTGAACTGTAGCATGATTTTTTTATTTGCGGCTTCTGTACATTTACAGCAACATTTTTTCTTTAATTAGTTGTAGGCAATGATTGCAAGCTATTGATTTGGATGTGCGAGGTTCAGTGTGTATATTCATGTTTATAAGAATCAAAACTCTATCGATGAATGCAATGTACAAAAGGGTAATAGGACAATCTCACTAACATAAGCCTAAGGAGTTGTGGAAACACTCTCTCAAACTGGTGAGGGGATTACTTATGATCAAACAGGAAAAGGCACCCCAAGAGCGAGTTCACATGGTCTGTACAGTCCCAAGTTACCAAAAATTGTTTATCTGTTCCATCGAAAGCCCTTCTTTTCTTCGTTAGTTTATGTGTCCACTTTGTTGCTGTCTTATTTGAGTCAGTCGTTGATAATCTGCTGTTAGTTGGTTGGGTAATTAACTGTAGTAGCTTATAAGCTCCTGCATTTGCAACAGAAATCCCGAGTTTTTTGGAAGAACCGGGTGCCTAATGGTTTGTTTGCAATGGTTTTTAGTCCAAACCCAATGCCAAAAACTGGCCTTTACGTTTCCACTTAGTGTCAATTGTCAAAATGACAGCTCTATTCCACCTTCGGTTTAGTTGGTTCAGTTTCGGCTTAAACCAAAATGAGATGCAACTCCTCAGACTAACAATGGTGGCTTGAGAGCTATGACTGATAGATAAGATGAGAGTGTGTGAAGTTAAGATAAAGGCTAATGCATGAGAGAACTGTAACTAAGAGAGTAGGAGTGGAGAGATGGAGAACTGAGAGGGAGGGTTATCCATTGGTGGGGGGATTGAACTGGAGGCATGCAGTGAGTGAGCTAGTGCTGGTTGAGATTTGGGAAGTGAGAGGGAGGATTTGCAGTGCAGGAAAAGAAAACTAATATTTTGCAAAAAAAGATCTCCATGGTTCATGAATCATTGTATCGAATTACCAAAAAAAAAAAAAAAAAAAGCTTCATTTCATGTTCATTTGCAGTTTGAACTTCTTTTTGGGGATTTCTTTTGACAGCCTTCAATTAAACAATTGCATTGCCAGGAGACTCTCACTCTCTACTTGCCAGTGTTTTGATCATCCATCTTTTCGAAAATGAGAAGGGGGGGTTCTTGTAGCTTATTTTTGTTAGAGCCTCTTTTTGTCCATTTGGAATGAACAAAATCTTCATGTCTTAAAGGATAAAGAATAGGATATTGATATTGTTGTAGAATTTTTATCATTTTTGGCTCTCCCTTGATGGAAAATTTTTTTGTACTTTCATACCTATGGCCTCGCTTCTCTTATAGCCCCAATGGAAGGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTATAATCCCTTTGGATAGGGGGTTTTGCCCTTTTTTTATAATTTTGTGTCAACAATGAAAAGTTTCTTCTCCAAACAAATAATTATAATATTAAAAAAAAAAAGAACAGAGAAAAAAAGAGTACATTTACTGAATATGTCAGAGAGGTTAGGAAGGCACTTTCTTGCCACTCCAACTGAAGTGTGCTTCAAGTCAATGACCAATGTTGGTTTTAGTTGGTTTTCTGAATTCACATGTTCTCGCCTTAGGAGAACCCCTTGTGTGTGAGCTAAACTGTCGAAGTTTATGTAGAGATCTGAATCTGTAACAGCTCTAGTGCCCATTTTGACTTAGAGTTTTTAAAAGTTTGAGATTGAGATAAGTTCCATTGATATCTAAGGCCTAATCTAGTCTCTTCCAAATCTCTCTTTTTTCTTTTTTCTTTTTTATTTTTTTAAATATTTTTTAAGGAATATTTCCTCTTTTTTTTAGTGTGAATTTTCTGGTGCTACTGCAATGGAAGGACTTCTTTCTGAAATATCACCTCAAGTATTGTCTTACGTAAATTGTGGAAGCTTTACCTAAACAGATCCAAAACCCTTTCCTACTACATAGAGAGCCTTGACACTCAAGAACACTCTTGTGTGTGAGCTTAACTGTGATTCAAGAGTCTACCTCGTTATTCTGCTACATAGAGCTTTGACACTCAAAATACACTTCTGAAATTTGAACAGTTTAAGACTCCATGCCCACATGCACACTTACACTTCTAGATTTTGTGCATAATTCAATTTGATTTATTGTGTTTGTTTCCTACCGAGCTTTCACTTATTAAATGGGCTCTCAGCTTTGCATCTGAAGCTTTTTGGTCCTTTTTTTTATCTTTTAATTTCTCACTATACTTAAGGATACTCTTGAATTTAGAACTAACGCTATCAGTATGTAGTCCTAGGTGCAGGAGTTGTGGCGGATTCACTCTTGATTAAGGAATAAAAGCTTTTGTTGCAGAATGCAGATGTCTATGCAATGATGATCACTGCCATGTATTGTCGATTTTCTTCATTGTTCCTATCATGATCTGAACATATGTAAACTTGATCATCAAGAATTACTTCTCTTCTTTATATCAAAGTAGATTTCCTCCCCTATGTTGACTTGTGAGTTTCTGTTTTCTGGAACTAGCTCTTGCCTCGAGCAGGAGGAAACCCTGTACTCAAATGATTGATAAATAGCTTGGAATTCATGTACGTTTTTGTTTTTTTGTTCATCCTTTTCCCCTATGAAAAACATGATATTTTGATGCAATAATAACAAGAATCCAAGTTGTAGGGGG

mRNA sequence

GGAGGAACCTCCGAGATTTTCAACAGCAGAGAGAAAAAATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAATTTTTTCTCCCGACCTGCATCCCCTGTCCTAGGTGCAGGAGTTGTGGCGGATTCACTCTTGATTAAGGAATAAAAGCTTTTGTTGCAGAATGCAGATGTCTATGCAATGATGATCACTGCCATGTATTGTCGATTTTCTTCATTGTTCCTATCATGATCTGAACATATGTAAACTTGATCATCAAGAATTACTTCTCTTCTTTATATCAAAGTAGATTTCCTCCCCTATGTTGACTTGTGAGTTTCTGTTTTCTGGAACTAGCTCTTGCCTCGAGCAGGAGGAAACCCTGTACTCAAATGATTGATAAATAGCTTGGAATTCATGTACGTTTTTGTTTTTTTGTTCATCCTTTTCCCCTATGAAAAACATGATATTTTGATGCAATAATAACAAGAATCCAAGTTGTAGGGGG

Coding sequence (CDS)

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

Protein sequence

MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATSHS

Homology

[Close]

BLAST of ClCG04G006170 vs. Swiss-Prot
Match: NDUA1_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana GN=At3g08610 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-22
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATS 64
          WLEA LPLGII GMLCIMGN+QY+IHKA HGRPKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 5  WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPS 64

[Close]

BLAST of ClCG04G006170 vs. TrEMBL
Match: A0A0A0L2Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337280 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.7e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          A SHS
Sbjct: 63 AASHS 67

[Close]

BLAST of ClCG04G006170 vs. TrEMBL
Match: B9T0P0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126310 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-28
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M WRWLEAALPLGIIAGMLC+MGNAQY+IH+AAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MSWRWLEAALPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of ClCG04G006170 vs. TrEMBL
Match: E9JFV8_JATCU (Putative uncharacterized protein OS=Jatropha curcas PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-27
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MAWIWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of ClCG04G006170 vs. TrEMBL
Match: A0A061EHP1_THECC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Theobroma cacao GN=TCM_019652 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-26
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLCIMGNAQY IHKA HGRPKHIGNDMWDVAMERRDKKL+ENL
Sbjct: 1  MAWIWLEAALPLGIIAGMLCIMGNAQYQIHKAYHGRPKHIGNDMWDVAMERRDKKLLENL 60

Query: 61 SATS 65
          SA+S
Sbjct: 61 SASS 64

[Close]

BLAST of ClCG04G006170 vs. TrEMBL
Match: D7UBK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00270 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-25
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          MGW WL+AALPLGIIAGMLC+MGNAQ++IHKAAHGRPKH+GND+WDVAMERRDKKLVE+ 
Sbjct: 1  MGWVWLQAALPLGIIAGMLCVMGNAQFYIHKAAHGRPKHVGNDLWDVAMERRDKKLVESS 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAAS 64

[Close]

BLAST of ClCG04G006170 vs. TAIR10
Match: AT3G08610.1 (AT3G08610.1 unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 9.6e-24
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATS 64
          WLEA LPLGII GMLCIMGN+QY+IHKA HGRPKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 5  WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPS 64

[Close]

BLAST of ClCG04G006170 vs. NCBI nr
Match: gi|659126648|ref|XP_008463294.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-30
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          ATSHS
Sbjct: 63 ATSHS 67

[Close]

BLAST of ClCG04G006170 vs. NCBI nr
Match: gi|449449833|ref|XP_004142669.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          A SHS
Sbjct: 63 AASHS 67

[Close]

BLAST of ClCG04G006170 vs. NCBI nr
Match: gi|255582024|ref|XP_002531809.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M WRWLEAALPLGIIAGMLC+MGNAQY+IH+AAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MSWRWLEAALPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of ClCG04G006170 vs. NCBI nr
Match: gi|802777893|ref|XP_012091003.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MAWIWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of ClCG04G006170 vs. NCBI nr
Match: gi|590653571|ref|XP_007033460.1| (NADH dehydrogenase [ubiquinone])

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-26
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLCIMGNAQY IHKA HGRPKHIGNDMWDVAMERRDKKL+ENL
Sbjct: 1  MAWIWLEAALPLGIIAGMLCIMGNAQYQIHKAYHGRPKHIGNDMWDVAMERRDKKLLENL 60

Query: 61 SATS 65
          SA+S
Sbjct: 61 SASS 64

The following BLAST results are available for this feature:

BLAST of ClCG04G006170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA1_ARATH	1.7e-22	80.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thal...	[more]

BLAST of ClCG04G006170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Y7_CUCSA	7.7e-30	95.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337280 PE=4 SV=1	[more]
B9T0P0_RICCO	7.2e-28	92.19	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126310 PE=4 SV=1	[more]
E9JFV8_JATCU	2.7e-27	92.19	Putative uncharacterized protein OS=Jatropha curcas PE=2 SV=1	[more]
A0A061EHP1_THECC	2.3e-26	90.63	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Theobroma cacao ...	[more]
D7UBK7_VITVI	1.5e-25	84.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00270 PE=4 SV=...	[more]

BLAST of ClCG04G006170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08610.1	9.6e-24	80.00	unknown protein	[more]

BLAST of ClCG04G006170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126648\|ref\|XP_008463294.1\|	2.9e-30	96.92	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449449833\|ref\|XP_004142669.1\|	1.1e-29	95.38	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|255582024\|ref\|XP_002531809.1\|	1.0e-27	92.19	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|802777893\|ref\|XP_012091003.1\|	3.9e-27	92.19	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590653571\|ref\|XP_007033460.1\|	3.3e-26	90.63	NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017384	NADH_Ub_cplx-1_asu_su-1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0015992	proton transport
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G006170.1	ClCG04G006170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PANTHER	PTHR17098	NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT	coord: 3..59 score: 1.5
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PFAM	PF15879	MWFE	coord: 5..56 score: 1.2
None	No IPR available	PANTHER	PTHR17098:SF2	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 1	coord: 3..59 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G006170	Csa4G337280	Cucumber (Chinese Long) v2	cuwcgB301
ClCG04G006170	MELO3C025258	Melon (DHL92) v3.5.1	mewcgB525
ClCG04G006170	Cla012052	Watermelon (97103) v1	wcgwmB255
ClCG04G006170	Cla97C04G072720	Watermelon (97103) v2	wcgwmbB200
ClCG04G006170	CSPI04G16790	Wild cucumber (PI 183967)	cpiwcgB316
ClCG04G006170	Cucsa.130750	Cucumber (Gy14) v1	cgywcgB214
ClCG04G006170	CmaCh03G002760	Cucurbita maxima (Rimu)	cmawcgB585
ClCG04G006170	CmaCh07G012010	Cucurbita maxima (Rimu)	cmawcgB761
ClCG04G006170	CmoCh07G012440	Cucurbita moschata (Rifu)	cmowcgB762
ClCG04G006170	CmoCh03G002880	Cucurbita moschata (Rifu)	cmowcgB584
ClCG04G006170	Cp4.1LG19g01690	Cucurbita pepo (Zucchini)	cpewcgB436
ClCG04G006170	Cp4.1LG10g07300	Cucurbita pepo (Zucchini)	cpewcgB078
ClCG04G006170	CsGy4G016120	Cucumber (Gy14) v2	cgybwcgB282
ClCG04G006170	MELO3C025258.2	Melon (DHL92) v3.6.1	medwcgB521
ClCG04G006170	Carg12636	Silver-seed gourd	carwcgB0274
ClCG04G006170	Carg19535	Silver-seed gourd	carwcgB0609
ClCG04G006170	CsaV3_4G027390	Cucumber (Chinese Long) v3	cucwcgB318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G006170	Cucurbita maxima (Rimu)	cmawcgB736
ClCG04G006170	Cucurbita moschata (Rifu)	cmowcgB650
ClCG04G006170	Cucurbita moschata (Rifu)	cmowcgB742
ClCG04G006170	Bottle gourd (USVL1VR-Ls)	lsiwcgB142
ClCG04G006170	Silver-seed gourd	carwcgB0026
ClCG04G006170	Wax gourd	wcgwgoB390