ClCG03G000670 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G000670
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 659754 .. 660315 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATCTTCACTTCACATCCCCCATTACCAATCTTTCAAACAAAGCCAAACGAACAACAACATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGGTACACAAACCACCATCTTTTGTGTAACTTGTGTTTTGAATAGTATAGAAAAATAAAATCTAATATCATGTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGACAAAATCTGCTTGCCAGAGGAGGAGGATTTGTTGGCAAACAACGTCAGCAAGGAAGCTTAAACAAAGAATTAATGATGTGCATGGAACCAATAATAGTAGAATAAATATTATAGTATTGATGTAAATAATTCCATTTGTGTGGTGAGAATGGAATAATATATGTTATCAAATTGATGTAATGAATGCTGAAAATAGTAT

mRNA sequence

TTTATCTTCACTTCACATCCCCCATTACCAATCTTTCAAACAAAGCCAAACGAACAACAACATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGACAAAATCTGCTTGCCAGAGGAGGAGGATTTGTTGGCAAACAACGTCAGCAAGGAAGCTTAAACAAAGAATTAATGATGTGCATGGAACCAATAATAGTAGAATAAATATTATAGTATTGATGTAAATAATTCCATTTGTGTGGTGAGAATGGAATAATATATGTTATCAAATTGATGTAATGAATGCTGAAAATAGTAT

Coding sequence (CDS)

ATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGA

Protein sequence

MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPSLSKVNDVDSHVSTNP

Homology

[Close]

BLAST of ClCG03G000670 vs. TrEMBL
Match: A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSFAL TSA I+PHS+ Q  T  +NDY+DPGANPRHDP   PPP   
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP--FPPPLEH 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V   H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of ClCG03G000670 vs. TrEMBL
Match: A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-13
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR +L  LLSF LVTSA I+PHS+ Q     INDY DPGANPRH+P   PPPP  
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNP--FPPPPRH 60

Query: 61 LSKVNDV-DSHVSTNP 76
          L +++ V D  ++ NP
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]

BLAST of ClCG03G000670 vs. TrEMBL
Match: A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-12
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 1  MDYFKARF--ALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPP 60
          MDY KAR   ALF LLSFALV SA I+PHS+ Q     INDY DPGANPRH P   PPP 
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP---PPPS 60

Query: 61 PSLSKVNDVDSHVSTN 75
             S+V+ V S +  N
Sbjct: 61 RHSSEVSVVKSRLIKN 73

[Close]

BLAST of ClCG03G000670 vs. TrEMBL
Match: A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KA  ALF L+SF LVTSA I+PHS+ Q     I DY +    PRH P   PPP P 
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP---PPPSPP 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V D H+  NP
Sbjct: 61 SFEVNVVKDRHIKKNP 69

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: gi|700210720|gb|KGN65816.1| (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSFAL TSA I+PHS+ Q  T  +NDY+DPGANPRHDP   PPP   
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP--FPPPLEH 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V   H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: gi|700210719|gb|KGN65815.1| (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR +L  LLSF LVTSA I+PHS+ Q     INDY DPGANPRH+P   PPPP  
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNP--FPPPPRH 60

Query: 61 LSKVNDV-DSHVSTNP 76
          L +++ V D  ++ NP
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: gi|778661735|ref|XP_011658636.1| (PREDICTED: protein PSY3 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 1  MDYFKARF--ALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPP 60
          MDY KAR   ALF LLSFALV SA I+PHS+ Q     INDY DPGANPRH P   PPP 
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP---PPPS 60

Query: 61 PSLSKVNDVDSHVSTN 75
             S+V+ V S +  N
Sbjct: 61 RHSSEVSVVKSRLIKN 73

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: gi|700210721|gb|KGN65817.1| (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KA  ALF L+SF LVTSA I+PHS+ Q     I DY +    PRH P   PPP P 
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP---PPPSPP 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V D H+  NP
Sbjct: 61 SFEVNVVKDRHIKKNP 69

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: gi|659115448|ref|XP_008457562.1| (PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY K R AL  LLSFA+   + I+  S+ Q     INDY DPGANPRHDP    PPPP 
Sbjct: 1  MDYSKTRLALLLLLSFAIKLKSNII--SENQEVAYTINDYPDPGANPRHDPF---PPPPQ 60

Query: 61 LSKVNDVD-SHVSTNP 76
            +V+ V   H+  NP
Sbjct: 61 QFEVSVVKVQHIRKNP 71

The following BLAST results are available for this feature:

BLAST of ClCG03G000670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0T8_CUCSA	1.0e-14	60.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1	[more]
A0A0A0LV67_CUCSA	1.9e-13	56.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1	[more]
A0A0A0LVJ6_CUCSA	8.2e-12	57.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1	[more]
A0A0A0LY98_CUCSA	1.4e-08	51.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1	[more]

BLAST of ClCG03G000670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210720\|gb\|KGN65816.1\|	1.5e-14	60.53	hypothetical protein Csa_1G532240 [Cucumis sativus]	[more]
gi\|700210719\|gb\|KGN65815.1\|	2.8e-13	56.58	hypothetical protein Csa_1G532230 [Cucumis sativus]	[more]
gi\|778661735\|ref\|XP_011658636.1\|	1.2e-11	57.89	PREDICTED: protein PSY3 [Cucumis sativus]	[more]
gi\|700210721\|gb\|KGN65817.1\|	2.1e-08	51.32	hypothetical protein Csa_1G532250 [Cucumis sativus]	[more]
gi\|659115448\|ref\|XP_008457562.1\|	3.5e-08	50.00	PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000670.1	ClCG03G000670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G000670	Cla008156	Watermelon (97103) v1	wcgwmB223
ClCG03G000670	Cla97C03G051470	Watermelon (97103) v2	wcgwmbB186
ClCG03G000670	Bhi08G000411	Wax gourd	wcgwgoB340
ClCG03G000670	CsaV3_1G036270	Cucumber (Chinese Long) v3	cucwcgB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G000670	Watermelon (97103) v1	wcgwmB221
ClCG03G000670	Cucurbita pepo (Zucchini)	cpewcgB380
ClCG03G000670	Cucurbita pepo (Zucchini)	cpewcgB467
ClCG03G000670	Cucurbita pepo (Zucchini)	cpewcgB503
ClCG03G000670	Bottle gourd (USVL1VR-Ls)	lsiwcgB185
ClCG03G000670	Cucumber (Gy14) v2	cgybwcgB044
ClCG03G000670	Melon (DHL92) v3.6.1	medwcgB141
ClCG03G000670	Melon (DHL92) v3.6.1	medwcgB322
ClCG03G000670	Silver-seed gourd	carwcgB0154
ClCG03G000670	Silver-seed gourd	carwcgB0504
ClCG03G000670	Silver-seed gourd	carwcgB0648
ClCG03G000670	Silver-seed gourd	carwcgB0974
ClCG03G000670	Watermelon (97103) v2	wcgwmbB176
ClCG03G000670	Watermelon (97103) v2	wcgwmbB187
ClCG03G000670	Wax gourd	wcgwgoB337
ClCG03G000670	Watermelon (Charleston Gray)	wcgwcgB049
ClCG03G000670	Watermelon (Charleston Gray)	wcgwcgB140
ClCG03G000670	Cucumber (Gy14) v1	cgywcgB315
ClCG03G000670	Cucurbita maxima (Rimu)	cmawcgB194
ClCG03G000670	Cucurbita maxima (Rimu)	cmawcgB229
ClCG03G000670	Cucurbita maxima (Rimu)	cmawcgB404
ClCG03G000670	Cucurbita maxima (Rimu)	cmawcgB646
ClCG03G000670	Cucurbita maxima (Rimu)	cmawcgB735
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB184
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB212
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB403
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB648
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB649
ClCG03G000670	Cucurbita moschata (Rifu)	cmowcgB741
ClCG03G000670	Wild cucumber (PI 183967)	cpiwcgB050
ClCG03G000670	Wild cucumber (PI 183967)	cpiwcgB220
ClCG03G000670	Cucumber (Chinese Long) v2	cuwcgB047
ClCG03G000670	Cucumber (Chinese Long) v2	cuwcgB216
ClCG03G000670	Melon (DHL92) v3.5.1	mewcgB149
ClCG03G000670	Melon (DHL92) v3.5.1	mewcgB328