CsaV3_1G036270 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G036270
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 22234128 .. 22240674 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCCGTTTCAATAATAAGATAGAGTTTAATTTAAAGAATGTATGTACATTGAGATATTAGGAATGTGATCCTTTTTTTTCTTTACTTACCAAAATTAACAACACATTTCATCTATTTTTTGTTCTATATATCCTTCATTCAAATTCACCAATTTTCAACATGATAAAAACTTCCCATAGCTAATTTCTTCATTTCTCTCTACGTAAACACACACATATATGTTTGATTTCTTTATTTCCTAATCTCCATTACAAATCATTCAAACCAAAGAAAATCCAACAACTAACATATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGGTACGTAAGATTGCCAATTAACTTTGCTGTTGAATAGTCTAGATTTGTATAATATATAGAAAACTAAATAATCTAATATCATATCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAAAGAAATTTGGCTTGGTAGAGGAGGAAGAAAGGATGAGGAAGGAAGCTTAAAAGGAGAAATAATGGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATTGATTTATATAATTCCCTTTATGTGTGTTGAGAATGGAGTAATATATATTATCAAATTAATGTAATAAATGCTGAAAATATAATATGCTAATGACTAAATATATGTATATAAAGTTGTGCC

mRNA sequence

ATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Coding sequence (CDS)

ATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Protein sequence

MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSFEVNAVRGRHITKNP

Homology

[Close]

BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARL+L LLLSF L TSARIIPHSENQE  Y++NDY DPGANPRH+PFPPP  H F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNAVRGRHITKNP 75
          E++ V+   ITKNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsaV3_1G036270 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-20
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60

Query: 61 SFEVNAVRGRHITKNP 75
          S EV+ V+ R I   P
Sbjct: 61 SSEVSVVKSRLIKNKP 75

[Close]

BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.9e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60

Query: 61 EVNAVRGRHITKNP 75
          EVN V+ RHI KNP
Sbjct: 61 EVNVVKDRHIKKNP 69

[Close]

BLAST of CsaV3_1G036270 vs. NCBI nr
Match: XP_023522911.1 (extensin-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-04
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 5  KARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP-----FPPP 56
          KARL L  LLSFA  +SARI+  S  Q    ++NDYSDPG NP   P     FPPP
Sbjct: 4  KARLCLVFLLSFAFVSSARIMSDSGKQVIEIVINDYSDPGKNPTLSPVVPKQFPPP 59

[Close]

BLAST of CsaV3_1G036270 vs. TAIR10
Match: AT2G29995.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 26/56 (46.43%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 4  SKARLALFLLLSFALATSARIIPHSENQEATYI--------MNDYSDPGANPRHDP 52
          S+  L LFL  +FAL +SARI       E T +         NDYSDP AN RHDP
Sbjct: 7  SRIGLCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

[Close]

BLAST of CsaV3_1G036270 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsaV3_1G036270 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARL+L LLLSF L TSARIIPHSENQE  Y++NDY DPGANPRH+PFPPP  H F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNAVRGRHITKNP 75
          E++ V+   ITKNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsaV3_1G036270 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-20
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60

Query: 61 SFEVNAVRGRHITKNP 75
          S EV+ V+ R I   P
Sbjct: 61 SSEVSVVKSRLIKNKP 75

[Close]

BLAST of CsaV3_1G036270 vs. TrEMBL
Match: tr|A0A0A0LY98|A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60

Query: 61 EVNAVRGRHITKNP 75
          EVN V+ RHI KNP
Sbjct: 61 EVNVVKDRHIKKNP 69

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65816.1	1.1e-34	100.00	hypothetical protein Csa_1G532240 [Cucumis sativus]	[more]
KGN65815.1	2.0e-23	72.97	hypothetical protein Csa_1G532230 [Cucumis sativus]	[more]
XP_011658636.1	7.8e-20	72.37	PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1...	[more]
KGN65817.1	4.9e-14	62.16	hypothetical protein Csa_1G532250 [Cucumis sativus]	[more]
XP_023522911.1	4.6e-04	53.57	extensin-like, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G036270 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29995.1	1.5e-04	46.43	unknown protein	[more]

BLAST of CsaV3_1G036270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G036270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0T8\|A0A0A0M0T8_CUCSA	7.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
tr\|A0A0A0LV67\|A0A0A0LV67_CUCSA	1.3e-23	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
tr\|A0A0A0LVJ6\|A0A0A0LVJ6_CUCSA	5.2e-20	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1	[more]
tr\|A0A0A0LY98\|A0A0A0LY98_CUCSA	3.3e-14	62.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036270.1	CsaV3_1G036270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G036270	CSPI01G23950	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G036270	CsGy1G023440	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G036270	Cla008156	Watermelon (97103) v1	cucwmB026
CsaV3_1G036270	ClCG03G000670	Watermelon (Charleston Gray)	cucwcgB051
CsaV3_1G036270	MELO3C035284.2	Melon (DHL92) v3.6.1	cucmedB023

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G036270	Silver-seed gourd	carcucB0693
CsaV3_1G036270	Silver-seed gourd	carcucB1040
CsaV3_1G036270	Cucumber (Gy14) v1	cgycucB280
CsaV3_1G036270	Cucurbita maxima (Rimu)	cmacucB0250
CsaV3_1G036270	Cucurbita maxima (Rimu)	cmacucB0512
CsaV3_1G036270	Cucurbita maxima (Rimu)	cmacucB0821
CsaV3_1G036270	Cucurbita maxima (Rimu)	cmacucB0822
CsaV3_1G036270	Cucurbita maxima (Rimu)	cmacucB0963
CsaV3_1G036270	Cucurbita moschata (Rifu)	cmocucB0236
CsaV3_1G036270	Cucurbita moschata (Rifu)	cmocucB0262
CsaV3_1G036270	Cucurbita moschata (Rifu)	cmocucB0500
CsaV3_1G036270	Cucurbita moschata (Rifu)	cmocucB0804
CsaV3_1G036270	Cucurbita moschata (Rifu)	cmocucB0806
CsaV3_1G036270	Cucurbita pepo (Zucchini)	cpecucB0476
CsaV3_1G036270	Cucurbita pepo (Zucchini)	cpecucB0625
CsaV3_1G036270	Cucurbita pepo (Zucchini)	cpecucB0658
CsaV3_1G036270	Cucurbita pepo (Zucchini)	cpecucB1043
CsaV3_1G036270	Wild cucumber (PI 183967)	cpicucB130
CsaV3_1G036270	Bottle gourd (USVL1VR-Ls)	cuclsiB031
CsaV3_1G036270	Melon (DHL92) v3.5.1	cucmeB025
CsaV3_1G036270	Melon (DHL92) v3.5.1	cucmeB067
CsaV3_1G036270	Melon (DHL92) v3.6.1	cucmedB063
CsaV3_1G036270	Watermelon (Charleston Gray)	cucwcgB005
CsaV3_1G036270	Watermelon (Charleston Gray)	cucwcgB066
CsaV3_1G036270	Watermelon (97103) v1	cucwmB006
CsaV3_1G036270	Watermelon (97103) v1	cucwmB073
CsaV3_1G036270	Watermelon (97103) v2	cucwmbB014
CsaV3_1G036270	Watermelon (97103) v2	cucwmbB042
CsaV3_1G036270	Wax gourd	cucwgoB050
CsaV3_1G036270	Silver-seed gourd	carcucB0177
CsaV3_1G036270	Silver-seed gourd	carcucB0414
CsaV3_1G036270	Silver-seed gourd	carcucB0556