Bhi08G000411 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000411
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr8 : 16457903 .. 16458655 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAAATGAGAGGGAATTAATTAAAGTATGTATAAATTAAGATATTAGGTTTGCAAGTTATCACAAACAGCGACGTTTTGTCCCTTTTTTGACTTGCAAAACTTCACAACTTTCCATCCATCAATTCTCCAATTTCAACAAAATAAAACCTTCAAATAGTTTCGTCATTTCTCTCTATGTAAATATATACGAACTTCTTCACTTCACATCCCCAATTACCAATAATCTTTCAAACACAAAGGAATTACAATTCCATGGATTATTTCAAAGCTCGCCTCATGATCTTCCTCTTGCTCTCGTTTGCCCTCATTACCTCGGCTCGGATCACGCCCCGTTCAGGTATGCAAAATGGAACCCTTTGTGTAGTTCGTGTCTTGAATAGTATAGAAAAATAAAATCCTAACATCATGTCAGATAAGCAAGACACAACGATTGTGATAAATGACTATACTGATCCGGGAGCTAATCCAAGACATGATCCAAATCAGCCGCCCCCACCTCTGCCACGATCCGAGGTTAGCGATACCGATGGCCACGTCAGCGCAAATCCATAAAAAAATCTGCTTGCTGGAGGAGGAAGACCTGTTGATAGACAAGACAACATCAGCAAGGAAGCTTAAACAAAGAATTAATGATATGTGCATGAACCAATAATAGTACTATAAATATTATATTATTGATGTAAATAATTCCATTTCTGTGTTGAGAGTGGAATAATATATGTTACAAAATTGGTCTAATGAATGCTGAAA

mRNA sequence

GTTTAAATGAGAGGGAATTAATTAAAGTATGTATAAATTAAGATATTAGGTTTGCAAGTTATCACAAACAGCGACGTTTTGTCCCTTTTTTGACTTGCAAAACTTCACAACTTTCCATCCATCAATTCTCCAATTTCAACAAAATAAAACCTTCAAATAGTTTCGTCATTTCTCTCTATGTAAATATATACGAACTTCTTCACTTCACATCCCCAATTACCAATAATCTTTCAAACACAAAGGAATTACAATTCCATGGATTATTTCAAAGCTCGCCTCATGATCTTCCTCTTGCTCTCGTTTGCCCTCATTACCTCGGCTCGGATCACGCCCCGTTCAGATAAGCAAGACACAACGATTGTGATAAATGACTATACTGATCCGGGAGCTAATCCAAGACATGATCCAAATCAGCCGCCCCCACCTCTGCCACGATCCGAGGTTAGCGATACCGATGGCCACGTCAGCGCAAATCCATAAAAAAATCTGCTTGCTGGAGGAGGAAGACCTGTTGATAGACAAGACAACATCAGCAAGGAAGCTTAAACAAAGAATTAATGATATGTGCATGAACCAATAATAGTACTATAAATATTATATTATTGATGTAAATAATTCCATTTCTGTGTTGAGAGTGGAATAATATATGTTACAAAATTGGTCTAATGAATGCTGAAA

Coding sequence (CDS)

ATGGATTATTTCAAAGCTCGCCTCATGATCTTCCTCTTGCTCTCGTTTGCCCTCATTACCTCGGCTCGGATCACGCCCCGTTCAGATAAGCAAGACACAACGATTGTGATAAATGACTATACTGATCCGGGAGCTAATCCAAGACATGATCCAAATCAGCCGCCCCCACCTCTGCCACGATCCGAGGTTAGCGATACCGATGGCCACGTCAGCGCAAATCCATAA

Protein sequence

MDYFKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPLPRSEVSDTDGHVSANP

Homology

[Close]

BLAST of Bhi08G000411 vs. TAIR10
Match: AT2G29995.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.2e-04
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 8  LMIFLLLSFALITSARITPRSDKQDTTIV--------INDYTDPGANPRHDP 52
          L +FL  +FAL++SARI+    + + T+V         NDY+DP AN RHDP
Sbjct: 11 LCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

[Close]

BLAST of Bhi08G000411 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-14
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MDYFKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPLPR 60
          MDY KARL +FLLLSFAL TSARI P S+ Q+ T ++NDY+DPGANPRHDP   PPPL  
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEH 60

Query: 61 S-EVSDTDG-HVSANP 75
          S EV+   G H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of Bhi08G000411 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MDYFKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPLPR 60
          MDY KARL + LLLSF L+TSARI P S+ Q+   +INDY DPGANPRH+P  PPPP   
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNP-FPPPPRHL 60

Query: 61 SEVSDT-DGHVSANP 75
           E+S   DG ++ NP
Sbjct: 61 FEISVVKDGDITKNP 74

[Close]

BLAST of Bhi08G000411 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MDYFKAR--LMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPL 60
          MDY KAR  L +FLLLSFAL+ SARI P S+ Q+   VINDY DPGANPRH P  PPP  
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP--PPPSR 60

Query: 61 PRSEVS 65
            SEVS
Sbjct: 61 HSSEVS 64

[Close]

BLAST of Bhi08G000411 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MDYFKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPLPR 60
          MDY KARL +FLLLSFAL TSARI P S+ Q+ T ++NDY+DPGANPRHDP   PPPL  
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEH 60

Query: 61 S-EVSDTDG-HVSANP 75
          S EV+   G H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of Bhi08G000411 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MDYFKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPLPR 60
          MDY KARL + LLLSF L+TSARI P S+ Q+   +INDY DPGANPRH+P  PPPP   
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNP-FPPPPRHL 60

Query: 61 SEVSDT-DGHVSANP 75
           E+S   DG ++ NP
Sbjct: 61 FEISVVKDGDITKNP 74

[Close]

BLAST of Bhi08G000411 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MDYFKAR--LMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQPPPPL 60
          MDY KAR  L +FLLLSFAL+ SARI P S+ Q+   VINDY DPGANPRH P  PPP  
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP--PPPSR 60

Query: 61 PRSEVS 65
            SEVS
Sbjct: 61 HSSEVS 64

[Close]

BLAST of Bhi08G000411 vs. NCBI nr
Match: XP_022948581.1 (extensin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4  FKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQP---PPPLPR 63
          FK  L +  LLSFAL++SARI   S KQ T IVINDY+DPG NP   P  P   PPP P 
Sbjct: 3  FKGCLCLVFLLSFALVSSARIMSDSGKQATKIVINDYSDPGKNPTLSPVVPKQFPPPPPD 62

[Close]

BLAST of Bhi08G000411 vs. NCBI nr
Match: XP_023522911.1 (extensin-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 4  FKARLMIFLLLSFALITSARITPRSDKQDTTIVINDYTDPGANPRHDPNQP---PPPLP 60
          FKARL +  LLSFA ++SARI   S KQ   IVINDY+DPG NP   P  P   PPP P
Sbjct: 3  FKARLCLVFLLSFAFVSSARIMSDSGKQVIEIVINDYSDPGKNPTLSPVVPKQFPPPPP 61

The following BLAST results are available for this feature:

BLAST of Bhi08G000411 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000411 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29995.1	3.2e-04	44.23	unknown protein	[more]

BLAST of Bhi08G000411 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0T8\|A0A0A0M0T8_CUCSA	7.2e-14	63.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
tr\|A0A0A0LV67\|A0A0A0LV67_CUCSA	2.3e-12	58.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
tr\|A0A0A0LVJ6\|A0A0A0LVJ6_CUCSA	1.6e-10	65.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1	[more]

BLAST of Bhi08G000411 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65816.1	1.1e-13	63.16	hypothetical protein Csa_1G532240 [Cucumis sativus]	[more]
KGN65815.1	3.5e-12	58.67	hypothetical protein Csa_1G532230 [Cucumis sativus]	[more]
XP_011658636.1	2.5e-10	65.15	PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1...	[more]
XP_022948581.1	5.4e-05	56.45	extensin-like isoform X2 [Cucurbita moschata]	[more]
XP_023522911.1	5.4e-05	57.63	extensin-like, partial [Cucurbita pepo subsp. pepo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000411	Bhi08M000411	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000411	ClCG03G000670	Watermelon (Charleston Gray)	wcgwgoB340
Bhi08G000411	CSPI01G23950	Wild cucumber (PI 183967)	cpiwgoB048
Bhi08G000411	Lsi02G012740	Bottle gourd (USVL1VR-Ls)	lsiwgoB239
Bhi08G000411	MELO3C035287.2	Melon (DHL92) v3.6.1	medwgoB164
Bhi08G000411	Cla008156	Watermelon (97103) v1	wgowmB471
Bhi08G000411	Cla97C03G051470	Watermelon (97103) v2	wgowmbB470

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000411	Cucumber (Gy14) v1	cgywgoB364
Bhi08G000411	Cucumber (Gy14) v2	cgybwgoB045
Bhi08G000411	Cucurbita maxima (Rimu)	cmawgoB0252
Bhi08G000411	Cucurbita maxima (Rimu)	cmawgoB0593
Bhi08G000411	Cucurbita maxima (Rimu)	cmawgoB0886
Bhi08G000411	Cucurbita maxima (Rimu)	cmawgoB1039
Bhi08G000411	Cucurbita moschata (Rifu)	cmowgoB0245
Bhi08G000411	Cucurbita moschata (Rifu)	cmowgoB0590
Bhi08G000411	Cucurbita moschata (Rifu)	cmowgoB0882
Bhi08G000411	Cucurbita moschata (Rifu)	cmowgoB0884
Bhi08G000411	Cucurbita moschata (Rifu)	cmowgoB1033
Bhi08G000411	Cucurbita pepo (Zucchini)	cpewgoB0549
Bhi08G000411	Cucurbita pepo (Zucchini)	cpewgoB0650
Bhi08G000411	Cucurbita pepo (Zucchini)	cpewgoB0705
Bhi08G000411	Wild cucumber (PI 183967)	cpiwgoB336
Bhi08G000411	Cucumber (Chinese Long) v3	cucwgoB050
Bhi08G000411	Cucumber (Chinese Long) v2	cuwgoB048
Bhi08G000411	Cucumber (Chinese Long) v2	cuwgoB333
Bhi08G000411	Melon (DHL92) v3.6.1	medwgoB428
Bhi08G000411	Melon (DHL92) v3.5.1	mewgoB161
Bhi08G000411	Melon (DHL92) v3.5.1	mewgoB427
Bhi08G000411	Watermelon (Charleston Gray)	wcgwgoB127
Bhi08G000411	Watermelon (97103) v2	wgowmbB466
Bhi08G000411	Watermelon (97103) v1	wgowmB469
Bhi08G000411	Silver-seed gourd	carwgoB0468
Bhi08G000411	Silver-seed gourd	carwgoB0630
Bhi08G000411	Silver-seed gourd	carwgoB0783