MELO3C035287.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035287.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein PSY3
Locationchr12 : 696289 .. 696925 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTTTATTCTTTTCTCTCTGCGTAAATATATTTACCATTATATATATATATATATATATTGATTTCTTTACTTCCTAATCTCCATTACCAATCATTCAAACAAAGAAAAAACAGCAATAAATATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGGTACGGAAAATATGCTAATTTATAACCTATTATTGAGTAGTTTAGATTTACATAATGTATAGAAACTAAAATCTAATATCATATCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAAAGAAAATTTTACTCATTAGAGGAGGAAGAAAGCATCGGCAAGGAAGCTTGAAAAGAGAAATAATGTTGTGGATGAGCCAATAATAATACTATATATATAATCGATAATTTATATAATAATTCCCTTTATATGCTTTGAGAATGGAGTAATATGCATTATCAAATTAATGTAATAAATGCTGAAAAATAGCATGGTGTAATGAAC

mRNA sequence

ATAGTTTATTCTTTTCTCTCTGCGTAAATATATTTACCATTATATATATATATATATATATTGATTTCTTTACTTCCTAATCTCCATTACCAATCATTCAAACAAAGAAAAAACAGCAATAAATATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAAAGAAAATTTTACTCATTAGAGGAGGAAGAAAGCATCGGCAAGGAAGCTTGAAAAGAGAAATAATGTTGTGGATGAGCCAATAATAATACTATATATATAATCGATAATTTATATAATAATTCCCTTTATATGCTTTGAGAATGGAGTAATATGCATTATCAAATTAATGTAATAAATGCTGAAAAATAGCATGGTGTAATGAAC

Coding sequence (CDS)

ATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAA

Protein sequence

MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFEVSVVKVQHIRKNP
Homology
[Close]
BLAST of MELO3C035287.2 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ-F 60
          MDYSK RL+LLLLLSF +VT ARIIPHSENQEVAY INDYPDPGANPRH+PFPPPP+  F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]
BLAST of MELO3C035287.2 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 74
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of MELO3C035287.2 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 9.3e-18
Identity = 53/75 (70.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MDYSKTR--LALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ 60
          MDYSK R  LAL LLLSFA+V  ARIIPHSENQE AY INDYPDPGANPRH P PP    
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVSVVKVQHIRKNP 74
           EVSVVK + I+  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of MELO3C035287.2 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.1e-13
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK  LAL LL+SF +VT ARIIPHSENQE AY I DYP+    PRH         FE
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPSFE 60

Query: 61 VSVVKVQHIRKNP 74
          V+VVK +HI+KNP
Sbjct: 61 VNVVKDRHIKKNP 69

[Close]
BLAST of MELO3C035287.2 vs. NCBI nr
Match: XP_023522911.1 (extensin-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 5  KTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDP-----FPPPPQQF 61
          K RL L+ LLSFA V+ ARI+  S  Q +   INDY DPG NP   P     FPPPP  F
Sbjct: 4  KARLCLVFLLSFAFVSSARIMSDSGKQVIEIVINDYSDPGKNPTLSPVVPKQFPPPPPDF 63

[Close]
BLAST of MELO3C035287.2 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-24
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ-F 60
          MDYSK RL+LLLLLSF +VT ARIIPHSENQEVAY INDYPDPGANPRH+PFPPPP+  F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]
BLAST of MELO3C035287.2 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 74
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of MELO3C035287.2 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-18
Identity = 53/75 (70.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MDYSKTR--LALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ 60
          MDYSK R  LAL LLLSFA+V  ARIIPHSENQE AY INDYPDPGANPRH P PP    
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVSVVKVQHIRKNP 74
           EVSVVK + I+  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of MELO3C035287.2 vs. TrEMBL
Match: tr|A0A0A0LY98|A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK  LAL LL+SF +VT ARIIPHSENQE AY I DYP+    PRH         FE
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPSFE 60

Query: 61 VSVVKVQHIRKNP 74
          V+VVK +HI+KNP
Sbjct: 61 VNVVKDRHIKKNP 69

The following BLAST results are available for this feature:
BLAST of MELO3C035287.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65815.11.5e-2379.73hypothetical protein Csa_1G532230 [Cucumis sativus][more]
KGN65816.14.0e-2172.97hypothetical protein Csa_1G532240 [Cucumis sativus][more]
XP_011658636.19.3e-1870.67PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1... [more]
KGN65817.14.1e-1361.64hypothetical protein Csa_1G532250 [Cucumis sativus][more]
XP_023522911.11.5e-0450.82extensin-like, partial [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C035287.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035287.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035287.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV67|A0A0A0LV67_CUCSA9.8e-2479.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA2.7e-2172.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1[more]
tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA6.2e-1870.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1[more]
tr|A0A0A0LY98|A0A0A0LY98_CUCSA2.7e-1361.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035287.2.1MELO3C035287.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C035287.2Lsi02G012740Bottle gourd (USVL1VR-Ls)lsimedB183
MELO3C035287.2Cla97C03G051470Watermelon (97103) v2medwmbB142
MELO3C035287.2Bhi08G000411Wax gourdmedwgoB164
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035287.2Cucurbita pepo (Zucchini)cpemedB935
MELO3C035287.2Wild cucumber (PI 183967)cpimedB024
MELO3C035287.2Wild cucumber (PI 183967)cpimedB173
MELO3C035287.2Cucumber (Chinese Long) v2cumedB172
MELO3C035287.2Melon (DHL92) v3.6.1medmedB070
MELO3C035287.2Watermelon (Charleston Gray)medwcgB123
MELO3C035287.2Watermelon (Charleston Gray)medwcgB141
MELO3C035287.2Watermelon (97103) v1medwmB142
MELO3C035287.2Watermelon (97103) v1medwmB143
MELO3C035287.2Silver-seed gourdcarmedB0160
MELO3C035287.2Silver-seed gourdcarmedB0392
MELO3C035287.2Silver-seed gourdcarmedB0528
MELO3C035287.2Silver-seed gourdcarmedB0674
MELO3C035287.2Cucumber (Chinese Long) v3cucmedB023
MELO3C035287.2Watermelon (97103) v2medwmbB136
MELO3C035287.2Cucumber (Gy14) v2cgybmedB021
MELO3C035287.2Cucumber (Gy14) v1cgymedB307
MELO3C035287.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035287.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035287.2Cucurbita maxima (Rimu)cmamedB751
MELO3C035287.2Cucurbita maxima (Rimu)cmamedB850
MELO3C035287.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035287.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035287.2Cucurbita moschata (Rifu)cmomedB748
MELO3C035287.2Cucurbita moschata (Rifu)cmomedB844
MELO3C035287.2Cucurbita pepo (Zucchini)cpemedB453
MELO3C035287.2Cucurbita pepo (Zucchini)cpemedB561
MELO3C035287.2Cucurbita pepo (Zucchini)cpemedB589
MELO3C035287.2Cucumber (Chinese Long) v2cumedB023