ClCG02G021440 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G021440
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L18
LocationCG_Chr02 : 35964975 .. 35965361 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTCGGTCGAGTTATCAATAA

mRNA sequence

ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTCGGTCGAGTTATCAATAA

Coding sequence (CDS)

ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTCGGTCGAGTTATCAATAA

Protein sequence

MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVDDASRSSYQ
Homology
[Close]
BLAST of ClCG02G021440 vs. Swiss-Prot
Match: RL18_NEIG1 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of ClCG02G021440 vs. Swiss-Prot
Match: RL18_NEIMF (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of ClCG02G021440 vs. Swiss-Prot
Match: RL18_NEIMB (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of ClCG02G021440 vs. Swiss-Prot
Match: RL18_NEIM0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of ClCG02G021440 vs. Swiss-Prot
Match: RL18_NEIMA (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-06
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of ClCG02G021440 vs. TrEMBL
Match: A0A0A0KX15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007080 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-58
Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH DI KE+EKKGFKN TKIWAIVNSLKNNGVKLILDNNVD
Sbjct: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211

Query: 121 D-ASRSSYQ 129
           D A++S+YQ
Sbjct: 212 DNAAQSNYQ 220

[Close]
BLAST of ClCG02G021440 vs. TrEMBL
Match: V4SBX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002842mg PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-56
Identity = 114/127 (89.76%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIK SLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVD+NKEVEKKGFKNRTKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 121 DASRSSY 128
           + S  S+
Sbjct: 121 NTSGPSF 127

[Close]
BLAST of ClCG02G021440 vs. TrEMBL
Match: D7SND3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00430 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-56
Identity = 111/128 (86.72%), Postives = 124/128 (96.88%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRI+ATASTVEH+IKGSLECGRSCNAKAA VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIIATASTVEHAIKGSLECGRSCNAKAAGVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLE+GQGRGIHVD+NKEVEKKGFKNRTKIWA+VN LKNNG+KLILD++ +
Sbjct: 61  EVLAMRLKVEGLEEGQGRGIHVDVNKEVEKKGFKNRTKIWAVVNGLKNNGIKLILDDD-E 120

Query: 121 DASRSSYQ 129
           ++SR SY+
Sbjct: 121 NSSRPSYR 127

[Close]
BLAST of ClCG02G021440 vs. TrEMBL
Match: A0A0B0NQ41_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_06924 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-56
Identity = 109/127 (85.83%), Postives = 122/127 (96.06%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIK SLECGRSCNAKAA V+G
Sbjct: 12  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAATVIG 71

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVD+NKEVEKKGFKNRTK+WA+VN+LKN+GVK++L++N D
Sbjct: 72  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKVWAVVNALKNHGVKVVLEDNED 131

Query: 121 DASRSSY 128
           + SR S+
Sbjct: 132 NPSRPSF 138

[Close]
BLAST of ClCG02G021440 vs. TrEMBL
Match: A0A061H0A9_THECC (Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_042139 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.1e-56
Identity = 108/127 (85.04%), Postives = 122/127 (96.06%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVAT+STVEH+IK SLECGRSCNAKAA +VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATSSTVEHAIKNSLECGRSCNAKAATIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVD+NKEVEKKGFKNRTK+WA+VN+LKNNGVK++L++N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKVWAVVNALKNNGVKVVLEDNED 120

Query: 121 DASRSSY 128
           + S+ SY
Sbjct: 121 NPSQPSY 127

[Close]
BLAST of ClCG02G021440 vs. TAIR10
Match: AT3G45020.1 (AT3G45020.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 208.0 bits (528), Expect = 3.5e-54
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GL+ GQGRGIH D+ KE+EKKGFK+RTK+WA++NSL+NNGV LILD++ D
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of ClCG02G021440 vs. NCBI nr
Match: gi|659126690|ref|XP_008463315.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 235.0 bits (598), Expect = 7.5e-59
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIWAIVNSLKNNGVKLIL+NNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 121 DDASRSSYQ 129
           DDA++S+YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]
BLAST of ClCG02G021440 vs. NCBI nr
Match: gi|778689708|ref|XP_011653002.1| (PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 6.4e-58
Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH DI KE+EKKGFKN TKIWAIVNSLKNNGVKLILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 121 D-ASRSSYQ 129
           D A++S+YQ
Sbjct: 121 DNAAQSNYQ 129

[Close]
BLAST of ClCG02G021440 vs. NCBI nr
Match: gi|700197794|gb|KGN52952.1| (hypothetical protein Csa_4G007080 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 6.4e-58
Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH DI KE+EKKGFKN TKIWAIVNSLKNNGVKLILDNNVD
Sbjct: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211

Query: 121 D-ASRSSYQ 129
           D A++S+YQ
Sbjct: 212 DNAAQSNYQ 220

[Close]
BLAST of ClCG02G021440 vs. NCBI nr
Match: gi|1009116018|ref|XP_015874550.1| (PREDICTED: uncharacterized protein LOC107411474 [Ziziphus jujuba])

HSP 1 Score: 231.5 bits (589), Expect = 8.3e-58
Identity = 116/127 (91.34%), Postives = 124/127 (97.64%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRNVATSSTVEHSIKGSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVD+NKEVEKKGFKNRTKIWAIVNSLKNNGVKLILD+N +
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDDNDE 120

Query: 121 DASRSSY 128
           ++SR SY
Sbjct: 121 NSSRPSY 127

[Close]
BLAST of ClCG02G021440 vs. NCBI nr
Match: gi|567878549|ref|XP_006431833.1| (hypothetical protein CICLE_v10002842mg [Citrus clementina])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 114/127 (89.76%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIK SLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVD+NKEVEKKGFKNRTKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 121 DASRSSY 128
           + S  S+
Sbjct: 121 NTSGPSF 127

The following BLAST results are available for this feature:
BLAST of ClCG02G021440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_NEIG19.6e-0629.6350S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090... [more]
RL18_NEIMF9.6e-0629.6350S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s... [more]
RL18_NEIMB9.6e-0629.6350S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) GN... [more]
RL18_NEIM09.6e-0629.6350S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ... [more]
RL18_NEIMA9.6e-0629.6350S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s... [more]
BLAST of ClCG02G021440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KX15_CUCSA4.4e-5889.92Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007080 PE=4 SV=1[more]
V4SBX3_9ROSI1.9e-5689.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002842mg PE=4 SV=1[more]
D7SND3_VITVI5.4e-5686.72Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00430 PE=4 SV=... [more]
A0A0B0NQ41_GOSAR5.4e-5685.8350S ribosomal L18 OS=Gossypium arboreum GN=F383_06924 PE=4 SV=1[more]
A0A061H0A9_THECC7.1e-5685.04Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_042139 PE=... [more]
BLAST of ClCG02G021440 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G45020.13.5e-5480.99 Ribosomal L18p/L5e family protein[more]
BLAST of ClCG02G021440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126690|ref|XP_008463315.1|7.5e-5991.47PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|778689708|ref|XP_011653002.1|6.4e-5889.92PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus][more]
gi|700197794|gb|KGN52952.1|6.4e-5889.92hypothetical protein Csa_4G007080 [Cucumis sativus][more]
gi|1009116018|ref|XP_015874550.1|8.3e-5891.34PREDICTED: uncharacterized protein LOC107411474 [Ziziphus jujuba][more]
gi|567878549|ref|XP_006431833.1|2.7e-5689.76hypothetical protein CICLE_v10002842mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0008097 5S rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G021440.1ClCG02G021440.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 5..74
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 5..113
score: 8.8
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..128
score: 2.6
NoneNo IPR availablePANTHERPTHR12899:SF4SUBFAMILY NOT NAMEDcoord: 1..128
score: 2.6
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 4..111
score: 4.97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G021440Csa6G147610Cucumber (Chinese Long) v2cuwcgB436
ClCG02G021440MELO3C026909Melon (DHL92) v3.5.1mewcgB000
ClCG02G021440Cla008712Watermelon (97103) v1wcgwmB197
ClCG02G021440Cla97C02G047530Watermelon (97103) v2wcgwmbB138
ClCG02G021440Bhi10G000121Wax gourdwcgwgoB300
ClCG02G021440CmoCh20G005440Cucurbita moschata (Rifu)cmowcgB479
ClCG02G021440Lsi10G012380Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G021440Cp4.1LG16g05120Cucurbita pepo (Zucchini)cpewcgB266
ClCG02G021440MELO3C026909.2Melon (DHL92) v3.6.1medwcgB086
ClCG02G021440Carg03215Silver-seed gourdcarwcgB0327
ClCG02G021440CsaV3_6G014220Cucumber (Chinese Long) v3cucwcgB458
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G021440Cucurbita maxima (Rimu)cmawcgB191
ClCG02G021440Cucurbita maxima (Rimu)cmawcgB227
ClCG02G021440Cucurbita maxima (Rimu)cmawcgB481
ClCG02G021440Cucurbita maxima (Rimu)cmawcgB541
ClCG02G021440Cucurbita maxima (Rimu)cmawcgB734
ClCG02G021440Cucurbita moschata (Rifu)cmowcgB211
ClCG02G021440Cucurbita moschata (Rifu)cmowcgB538
ClCG02G021440Cucurbita moschata (Rifu)cmowcgB738
ClCG02G021440Wild cucumber (PI 183967)cpiwcgB214
ClCG02G021440Wild cucumber (PI 183967)cpiwcgB457
ClCG02G021440Wild cucumber (PI 183967)cpiwcgB463
ClCG02G021440Cucumber (Chinese Long) v2cuwcgB212
ClCG02G021440Cucumber (Chinese Long) v2cuwcgB444
ClCG02G021440Melon (DHL92) v3.5.1mewcgB089
ClCG02G021440Melon (DHL92) v3.5.1mewcgB327
ClCG02G021440Melon (DHL92) v3.5.1mewcgB522
ClCG02G021440Watermelon (97103) v1wcgwmB175
ClCG02G021440Watermelon (97103) v1wcgwmB195
ClCG02G021440Cucurbita pepo (Zucchini)cpewcgB551
ClCG02G021440Cucurbita pepo (Zucchini)cpewcgB650
ClCG02G021440Bottle gourd (USVL1VR-Ls)lsiwcgB130
ClCG02G021440Bottle gourd (USVL1VR-Ls)lsiwcgB235
ClCG02G021440Cucumber (Gy14) v2cgybwcgB195
ClCG02G021440Cucumber (Gy14) v2cgybwcgB401
ClCG02G021440Cucumber (Gy14) v2cgybwcgB406
ClCG02G021440Melon (DHL92) v3.6.1medwcgB320
ClCG02G021440Melon (DHL92) v3.6.1medwcgB516
ClCG02G021440Silver-seed gourdcarwcgB0152
ClCG02G021440Silver-seed gourdcarwcgB0241
ClCG02G021440Silver-seed gourdcarwcgB0900
ClCG02G021440Cucumber (Chinese Long) v3cucwcgB215
ClCG02G021440Cucumber (Chinese Long) v3cucwcgB462
ClCG02G021440Watermelon (97103) v2wcgwmbB133
ClCG02G021440Watermelon (97103) v2wcgwmbB157
ClCG02G021440Wax gourdwcgwgoB257
ClCG02G021440Wax gourdwcgwgoB313
ClCG02G021440Wax gourdwcgwgoB316
ClCG02G021440Watermelon (Charleston Gray)wcgwcgB044
ClCG02G021440Watermelon (Charleston Gray)wcgwcgB128
ClCG02G021440Cucumber (Gy14) v1cgywcgB198
ClCG02G021440Cucumber (Gy14) v1cgywcgB526
ClCG02G021440Cucumber (Gy14) v1cgywcgB659