Carg03215 (gene) Silver-seed gourd

Overview
NameCarg03215
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50s ribosomal protein l18
LocationCucurbita_argyrosperma_scaffold_005 : 657850 .. 658236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAATCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

mRNA sequence

ATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAATCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

Coding sequence (CDS)

ATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAATCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

Protein sequence

MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE
Homology
[Close]
BLAST of Carg03215 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata])

HSP 1 Score: 249.2 bits (635), Expect = 7.5e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASRPSYE 129
           DASRPSYE
Sbjct: 121 DASRPSYE 128

[Close]
BLAST of Carg03215 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 9.8e-63
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKVDGLEQGQGRGIHMD+NKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASRPSYE 129
           DASRPSYE
Sbjct: 121 DASRPSYE 128

[Close]
BLAST of Carg03215 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 3.7e-62
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASRPSYE 129
           DA RPSYE
Sbjct: 121 DAVRPSYE 128

[Close]
BLAST of Carg03215 vs. NCBI nr
Match: XP_015874550.1 (uncharacterized protein LOC107411474 [Ziziphus jujuba] >XP_015874551.1 uncharacterized protein LOC107411474 [Ziziphus jujuba] >XP_024926467.1 uncharacterized protein LOC107411474 [Ziziphus jujuba] >XP_024926468.1 uncharacterized protein LOC107411474 [Ziziphus jujuba] >XP_024926469.1 uncharacterized protein LOC107411474 [Ziziphus jujuba])

HSP 1 Score: 230.7 bits (587), Expect = 2.8e-57
Identity = 115/127 (90.55%), Postives = 126/127 (99.21%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRNVATSSTVEHSIKGSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIWAIVNSLKNNGVKLILD+ND+
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDDNDE 120

Query: 121 DASRPSY 128
           ++SRPSY
Sbjct: 121 NSSRPSY 127

[Close]
BLAST of Carg03215 vs. NCBI nr
Match: XP_021893220.1 (uncharacterized protein LOC110811133 [Carica papaya])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 112/127 (88.19%), Postives = 124/127 (97.64%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEH+IKGSLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHAIKGSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKVDGLE+GQGRGIH+D NKE+EKKGFKNRTK+WA+VN+LKNNGVKLILD+NDD
Sbjct: 61  EVLAMRLKVDGLEEGQGRGIHVDANKEVEKKGFKNRTKVWALVNALKNNGVKLILDDNDD 120

Query: 121 DASRPSY 128
             SRP++
Sbjct: 121 SISRPNF 127

[Close]
BLAST of Carg03215 vs. TAIR10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-49
Identity = 92/111 (82.88%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           EVLAMRLKV+GL+ GQGRGIH D+ KEIEKKGFK+RTK+WA++NSL+NNGV
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGV 111

[Close]
BLAST of Carg03215 vs. Swiss-Prot
Match: sp|Q5F5U3|RL18_NEIG1 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 31/108 (28.70%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 4   LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Carg03215 vs. Swiss-Prot
Match: sp|A9M3V0|RL18_NEIM0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 31/108 (28.70%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 4   LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Carg03215 vs. Swiss-Prot
Match: sp|Q9JQQ6|RL18_NEIMA (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 31/108 (28.70%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 4   LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Carg03215 vs. Swiss-Prot
Match: sp|Q7DDT0|RL18_NEIMB (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 31/108 (28.70%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 4   LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Carg03215 vs. Swiss-Prot
Match: sp|A1KRI9|RL18_NEIMF (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) OX=272831 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 31/108 (28.70%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 4   LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Carg03215 vs. TrEMBL
Match: tr|A0A2N9ELK5|A0A2N9ELK5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57
Identity = 114/126 (90.48%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLF+S+KYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFLSIKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIWAIVN+LKNNGVKLILD+NDD
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILDDNDD 120

Query: 121 DASRPS 127
           + S+PS
Sbjct: 121 NTSQPS 126

[Close]
BLAST of Carg03215 vs. TrEMBL
Match: tr|A0A1S4E442|A0A1S4E442_CUCME (uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-56
Identity = 116/129 (89.92%), Postives = 125/129 (96.90%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNN-D 120
           EVLAMRLKVDGLEQGQGRGIH DINKEIEKKGF+NRTKIWAIVNSLKNNGVKLIL+NN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 121 DDASRPSYE 129
           DDA++ +Y+
Sbjct: 121 DDAAQSNYQ 129

[Close]
BLAST of Carg03215 vs. TrEMBL
Match: tr|A0A2N9J8M5|A0A2N9J8M5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61504 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-56
Identity = 112/125 (89.60%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLF+S+KYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFLSIKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFK+RTKIWAIVN+LKNNGVKLILD+NDD
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKSRTKIWAIVNALKNNGVKLILDDNDD 120

Query: 121 DASRP 126
           + S+P
Sbjct: 121 NTSQP 125

[Close]
BLAST of Carg03215 vs. TrEMBL
Match: tr|A0A2R6PEW3|A0A2R6PEW3_ACTCH (50S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30129 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.5e-56
Identity = 111/127 (87.40%), Postives = 125/127 (98.43%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRI+AT+STVEH+IK +LECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIIATSSTVEHAIKSTLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTK+WAIVN+LKNNGVKLILD++D+
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKVWAIVNALKNNGVKLILDDDDN 120

Query: 121 DASRPSY 128
            ASRPSY
Sbjct: 121 GASRPSY 127

[Close]
BLAST of Carg03215 vs. TrEMBL
Match: tr|V4SBX3|V4SBX3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002842mg PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.9e-56
Identity = 113/127 (88.98%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIK SLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120
           EVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIWAIVN+LKNNGVKLIL +NDD
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 121 DASRPSY 128
           + S PS+
Sbjct: 121 NTSGPSF 127

The following BLAST results are available for this feature:
BLAST of Carg03215 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943852.17.5e-63100.00uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar... [more]
XP_023511782.19.8e-6399.22uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.... [more]
XP_022985582.13.7e-6299.22uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac... [more]
XP_015874550.12.8e-5790.55uncharacterized protein LOC107411474 [Ziziphus jujuba] >XP_015874551.1 uncharact... [more]
XP_021893220.11.4e-5688.19uncharacterized protein LOC110811133 [Carica papaya][more]
BLAST of Carg03215 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G45020.12.6e-4982.88Ribosomal L18p/L5e family protein[more]
BLAST of Carg03215 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5F5U3|RL18_NEIG11.4e-0428.7050S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090... [more]
sp|A9M3V0|RL18_NEIM01.4e-0428.7050S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ... [more]
sp|Q9JQQ6|RL18_NEIMA1.4e-0428.7050S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s... [more]
sp|Q7DDT0|RL18_NEIMB1.4e-0428.7050S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX... [more]
sp|A1KRI9|RL18_NEIMF1.4e-0428.7050S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s... [more]
BLAST of Carg03215 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2N9ELK5|A0A2N9ELK5_FAGSY3.1e-5790.48Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1[more]
tr|A0A1S4E442|A0A1S4E442_CUCME2.6e-5689.92uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=... [more]
tr|A0A2N9J8M5|A0A2N9J8M5_FAGSY3.4e-5689.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61504 PE=4 SV=1[more]
tr|A0A2R6PEW3|A0A2R6PEW3_ACTCH4.5e-5687.4050S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|V4SBX3|V4SBX3_9ROSI5.9e-5688.98Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002842mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03215-RACarg03215-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 3..113
e-value: 1.0E-18
score: 69.5
NoneNo IPR availablePANTHERPTHR12899:SF4SUBFAMILY NOT NAMEDcoord: 1..127
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 5..111
e-value: 3.86443E-16
score: 68.3355
NoneNo IPR availableSUPERFAMILYSSF53137Translational machinery componentscoord: 4..111
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 6..74
e-value: 2.0E-8
score: 34.5
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03215Cla008712Watermelon (97103) v1carwmB0330
Carg03215Csa6G147610Cucumber (Chinese Long) v2carcuB0371
Carg03215MELO3C026909Melon (DHL92) v3.5.1carmeB0336
Carg03215ClCG02G021440Watermelon (Charleston Gray)carwcgB0327
Carg03215CmoCh20G005440Cucurbita moschata (Rifu)carcmoB0464
Carg03215Lsi10G012380Bottle gourd (USVL1VR-Ls)carlsiB303
Carg03215Cp4.1LG16g05120Cucurbita pepo (Zucchini)carcpeB0465
Carg03215MELO3C026909.2Melon (DHL92) v3.6.1carmedB0346
Carg03215CsaV3_6G014220Cucumber (Chinese Long) v3carcucB0375
Carg03215Cla97C02G047530Watermelon (97103) v2carwmbB0346
Carg03215Bhi10G000121Wax gourdcarwgoB0421
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg03215Bottle gourd (USVL1VR-Ls)carlsiB310
Carg03215Melon (DHL92) v3.5.1carmeB0340
Carg03215Watermelon (97103) v2carwmbB0340
Carg03215Watermelon (97103) v2carwmbB0353
Carg03215Wax gourdcarwgoB0415
Carg03215Wax gourdcarwgoB0423
Carg03215Wax gourdcarwgoB0427
Carg03215Silver-seed gourdcarcarB187
Carg03215Silver-seed gourdcarcarB287
Carg03215Silver-seed gourdcarcarB366
Carg03215Cucumber (Gy14) v2carcgybB0342
Carg03215Cucumber (Gy14) v2carcgybB0351
Carg03215Cucumber (Gy14) v1carcgyB0403
Carg03215Cucurbita maxima (Rimu)carcmaB0467
Carg03215Cucurbita maxima (Rimu)carcmaB0473
Carg03215Cucurbita maxima (Rimu)carcmaB0474
Carg03215Cucurbita maxima (Rimu)carcmaB0482
Carg03215Cucurbita moschata (Rifu)carcmoB0458
Carg03215Cucurbita moschata (Rifu)carcmoB0460
Carg03215Cucurbita moschata (Rifu)carcmoB0465
Carg03215Cucurbita moschata (Rifu)carcmoB0469
Carg03215Cucurbita pepo (Zucchini)carcpeB0470
Carg03215Cucurbita pepo (Zucchini)carcpeB0480
Carg03215Wild cucumber (PI 183967)carcpiB0374
Carg03215Cucumber (Chinese Long) v2carcuB0360
Carg03215Cucumber (Chinese Long) v3carcucB0363