ClCG01G024770 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G024770
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L14, putative
LocationCG_Chr01 : 37823571 .. 37825913 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCCCAGACCAAACCCTAACCGTAACTGCAGAGTTTTTGGTGCCATTGTTCGTCTTCGTCTCTTTCCCGGCCGTGCTGGTTTCGTAACTTAGATTTTGCCGACCAAAGTTTAGATATGGCTGCCGCTTTTGCTTCAAAGTTTTCCCGAGGTATGCGATTTTCCGAAATAGTGGATTCTGGAAATTCTTTTGTTCTTGATTTGGAGCTGCTATTGCTATAAGGCGTTGCTGCCTTTTTCTTTTTTAGGATTCTTCTGCTTTTGCTGAACCTTGATTTCGCCTGATTCATCTTAGGAAATGCTGATTTTTCTGTTTCTTTCTGACTGCTAGAAAAACAATTCTCAATTGAGTTTGCTCACATGTATATTTGCTATTGTTTGAATGTTACCGATTTGTTTTTAGAATACTTCTCAGGTTATAGATTGTTTAGCTGTTCTATTTGCTAAGAAACATATTTTGTGATAAGAGATAATTTGCTAAAGAGAGGGAGTGCCTCCTTAATGCTGGTTTTCTATCGTCTTCAACTATCCATGCAATTTGCTAGCTGCAAGTCGCATTTGATTTCATTCCCTTTTTTTGTCCCACAAGAGATTAGATAGGACCGTGGAGTAGTAGTGGAATTTATTCGTCGTGACATATGTCAATTTTTTAAAATTAGTTTGAATACTCAAACTAGTTTTAGTCTTTTTTTTCTTACTTATTGCTCCTTTGAACTTGATAGTCTGTGCACACCTTGTTGTAAAATTTGTCTTGACTTGATATTTGAATCTTTTATTTTTCTTACTTTAGTTTTGTTTTTCTAGTTGTTATGAAACTCATTTTAGCTCATTGTTTCTTGCTCAATGTTTTTGGAAAGTTAAACTAGTCGGCCGTTCATTGTTGGATGGACTTGGAAACAATTTGTCTGCTTCACTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGGTCTGCTCCTCTGAAATTTTAGTCTACCCATCTGACTTTCAACCCTAAAAAGAGAGTCTAATTAGAGAATGCATGCATGTGAATTTTTTCATATGGATGAACATGGAAGGTAAGGAAACAGAGGATTACAATGTTTCATGCCTCTGTCACTACTTATATAAAGAGTACTATTTAGGGGATAGTATTGCTATAAAATAGGTATTTAGAAACAGAGCATTCTTGCAGAACTCGGGGAATTTCGTTGTGAGGCTTGTTTGGATAATGTGGATTTAGTTCAAGATTCAGCGCTCTGCAAGTGATCTCCTGGAATAGAAACAATAGAAGCTCAGTGTTTGTAAACTAAATTTGTGCTTTGCTTGTGCATATGACCATGCTTAAATTTGATGATGGCATCTTTCTACACATCAACATATAATTATGTATACCTTGAAGCACTACTGAAATGAAGGAATGGCTGATCTGTAAACTTTAAGAGGGCATAAAATAGTTTAGAGAGACATTGAATTTTTTAAATCATTGCGAGCGACATAAAATGCTGCTTATACTACTATCAGCTTCTGATCTGACCTTGTGTATTGCCATATTTTACAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGGAAGAAAGGAGCACGATTAGGAGACACAATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGCGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTACTTGTGGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCACGAACTCAGGAAGAAAAAGCATGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGAATCAATCAATAATCAGATCGGAGCGGAGGCTAGAAGGTTTTTTTTTTTGTTAACTTCTTGATGCTGTGCCCAGAAGCATAACCCCATTGAGGCATATTTGGAAGAGAGAAGTGGAACCTGATAAATTGTCTTTGGCAAATAATAACATGAAAATTGTTGCAGTTGCTCTTGGCGTTGCAATTCCTCAGGTTCTTCTCAACATTCTTCCCTCACATCATTGAAGGAAAGTTTTTGATCTGTCTTTTAGTTTGGCAGTTACGTTTGTGAGGTTTGGATTTTGAATAAGTACGATGTGACTGGTTAGTTTTTAAACCAGATTCTCCCGATGTTCGAGATGCCATACAAAATACAAATTTTGCTGAAAACTTTAAATGTAGTTTGAAGGCGTTTCTTGGACCGTCTTTGTCCATGCAAATATTT

mRNA sequence

AGGCCCAGACCAAACCCTAACCGTAACTGCAGAGTTTTTGGTGCCATTGTTCGTCTTCGTCTCTTTCCCGGCCGTGCTGGTTTCGTAACTTAGATTTTGCCGACCAAAGTTTAGATATGGCTGCCGCTTTTGCTTCAAAGTTTTCCCGAGTTAAACTAGTCGGCCGTTCATTGTTGGATGGACTTGGAAACAATTTGTCTGCTTCACTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGGAAGAAAGGAGCACGATTAGGAGACACAATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGCGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTACTTGTGGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCACGAACTCAGGAAGAAAAAGCATGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGAATCAATCAATAATCAGATCGGAGCGGAGGCTAGAAGGTTTTTTTTTTTGTTAACTTCTTGATGCTGTGCCCAGAAGCATAACCCCATTGAGGCATATTTGGAAGAGAGAAGTGGAACCTGATAAATTGTCTTTGGCAAATAATAACATGAAAATTGTTGCAGTTGCTCTTGGCGTTGCAATTCCTCAGGTTCTTCTCAACATTCTTCCCTCACATCATTGAAGGAAAGTTTTTGATCTGTCTTTTAGTTTGGCAGTTACGTTTGTGAGGTTTGGATTTTGAATAAGTACGATGTGACTGGTTAGTTTTTAAACCAGATTCTCCCGATGTTCGAGATGCCATACAAAATACAAATTTTGCTGAAAACTTTAAATGTAGTTTGAAGGCGTTTCTTGGACCGTCTTTGTCCATGCAAATATTT

Coding sequence (CDS)

ATGGCTGCCGCTTTTGCTTCAAAGTTTTCCCGAGTTAAACTAGTCGGCCGTTCATTGTTGGATGGACTTGGAAACAATTTGTCTGCTTCACTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGGAAGAAAGGAGCACGATTAGGAGACACAATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGCGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTACTTGTGGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCACGAACTCAGGAAGAAAAAGCATGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGA

Protein sequence

MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Homology
[Close]
BLAST of ClCG01G024770 vs. Swiss-Prot
Match: HLP_ARATH (50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana GN=HLP PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 9.6e-62
Identity = 133/178 (74.72%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQ--RTFIQMRTVLK 60
           MAAAFAS+ +R    GRSLL GL N    S+ +SN  +  S +SQQQ  RTFIQM TVLK
Sbjct: 1   MAAAFASRLTRG---GRSLLGGLNNG--GSMNSSNGMMNESILSQQQQRRTFIQMGTVLK 60

Query: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGR 120
           VVDNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR
Sbjct: 61  VVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 120

Query: 121 CDGSEVKFDDNAVVLVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
            DGSEV+FDDNAVVLVD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 121 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]
BLAST of ClCG01G024770 vs. Swiss-Prot
Match: HLL_ARATH (50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana GN=HLL PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-48
Identity = 117/199 (58.79%), Postives = 136/199 (68.34%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASL-TASNETVCSSFISQQQ-RTFIQMRTVLK 60
           MA A ASK S+    GRSLL GL N  S  + ++SN  +  S +SQQQ RTFIQM T+LK
Sbjct: 1   MATALASKLSK----GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILK 60

Query: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVY 120
            VDNS AK+VMCIQSL+GKKGARLGD IV SVKEA+            P GKVKKG VVY
Sbjct: 61  CVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVY 120

Query: 121 GVVVRAAMQRGRCDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPV 169
           GVVVRAAM +GR DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPV
Sbjct: 121 GVVVRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPV 180

[Close]
BLAST of ClCG01G024770 vs. Swiss-Prot
Match: RL14_RICBR (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) GN=rplN PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 110
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 111 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 169
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of ClCG01G024770 vs. Swiss-Prot
Match: RL14_RICB8 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) GN=rplN PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 110
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 111 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 169
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of ClCG01G024770 vs. Swiss-Prot
Match: RL14_RICPR (50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) GN=rplN PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 110
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 111 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 169
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRSDGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of ClCG01G024770 vs. TrEMBL
Match: A0A0A0LME7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401350 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.1e-80
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MA+AFASKFSRV   GRSLL GLGNNLS SLT SNETVC+SFI+QQQRTFIQMRTVLKVV
Sbjct: 1   MASAFASKFSRV---GRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+ RCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of ClCG01G024770 vs. TrEMBL
Match: A0A0A0KIN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524020 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.6e-79
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAAAFASKFSRV    RSLL GLGNNLS  LTAS E++CSSFISQQQRTFIQMRTVLKVV
Sbjct: 87  MAAAFASKFSRVS---RSLLGGLGNNLSTLLTASKESICSSFISQQQRTFIQMRTVLKVV 146

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCD
Sbjct: 147 DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 206

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 207 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 252

[Close]
BLAST of ClCG01G024770 vs. TrEMBL
Match: A0A0D2UMB5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G046200 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 7.6e-74
Identity = 147/169 (86.98%), Postives = 155/169 (91.72%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MA  FAS+ SRV   GRSL+ GLGNNLS   + S+E  CSSF+SQQQRTFIQMRTVLKVV
Sbjct: 1   MAVTFASRCSRV---GRSLMGGLGNNLSNLRSTSSEITCSSFLSQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTI+ASVKEA PNGKVKKGKVVYGVVVRAAMQRGRCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIIASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR+KKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAEHIA 166

[Close]
BLAST of ClCG01G024770 vs. TrEMBL
Match: A0A061E8L1_THECC (Ribosomal protein L14p/L23e family protein isoform 1 OS=Theobroma cacao GN=TCM_011271 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.4e-73
Identity = 149/169 (88.17%), Postives = 155/169 (91.72%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAA+FASK SRV   GRSLL GLGNNLS   +ASNE V ++  SQQQRTFIQMRTVLKVV
Sbjct: 1   MAASFASKCSRV---GRSLLGGLGNNLSGLQSASNEVVGNNVWSQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKGKVVYGVVVRAAMQRGRCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR KKHVKILTLA+HIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRNKKHVKILTLAKHIA 166

[Close]
BLAST of ClCG01G024770 vs. TrEMBL
Match: A0A0D2TQN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G153800 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.9e-72
Identity = 145/169 (85.80%), Postives = 153/169 (90.53%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAA+ AS+ SRV   GRSL+DGL NN S   + S ET C SF+ QQQRTFIQMRTVLKVV
Sbjct: 1   MAASLASRCSRV---GRSLMDGLRNNFSNLPSTSRETTCGSFLYQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTI+ASVKEA PNGKVKKGKVVYGVVVRAAMQRGRCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIIASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR+KKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAEHIA 166

[Close]
BLAST of ClCG01G024770 vs. TAIR10
Match: AT5G46160.1 (AT5G46160.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 237.7 bits (605), Expect = 5.4e-63
Identity = 133/178 (74.72%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQ--RTFIQMRTVLK 60
           MAAAFAS+ +R    GRSLL GL N    S+ +SN  +  S +SQQQ  RTFIQM TVLK
Sbjct: 1   MAAAFASRLTRG---GRSLLGGLNNG--GSMNSSNGMMNESILSQQQQRRTFIQMGTVLK 60

Query: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGR 120
           VVDNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR
Sbjct: 61  VVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 120

Query: 121 CDGSEVKFDDNAVVLVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
            DGSEV+FDDNAVVLVD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 121 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]
BLAST of ClCG01G024770 vs. TAIR10
Match: AT1G17560.1 (AT1G17560.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-49
Identity = 117/199 (58.79%), Postives = 136/199 (68.34%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASL-TASNETVCSSFISQQQ-RTFIQMRTVLK 60
           MA A ASK S+    GRSLL GL N  S  + ++SN  +  S +SQQQ RTFIQM T+LK
Sbjct: 1   MATALASKLSK----GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILK 60

Query: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVY 120
            VDNS AK+VMCIQSL+GKKGARLGD IV SVKEA+            P GKVKKG VVY
Sbjct: 61  CVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVY 120

Query: 121 GVVVRAAMQRGRCDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPV 169
           GVVVRAAM +GR DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPV
Sbjct: 121 GVVVRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPV 180

[Close]
BLAST of ClCG01G024770 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14)

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-24
Identity = 52/120 (43.33%), Postives = 81/120 (67.50%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSL--KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 110
           IQ +T L V DNSGA+++MCI+ +    ++ A +GD IVA +KEA PN  +++ +V+  V
Sbjct: 2   IQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 111 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 169
           +VR   +  R +G+ +++DDNA V++D++G P GTRVFG +P ELR+    KI++LA  +
Sbjct: 62  IVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEV 121

[Close]
BLAST of ClCG01G024770 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 110
           + +   +   DN+GAK +  I S+KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 111 VVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHE 153
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GP+  E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

[Close]
BLAST of ClCG01G024770 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1 

Query: 51  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 110
           + +   +   DN+GAK +  I S+KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 111 VVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHE 153
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GP+  E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

[Close]
BLAST of ClCG01G024770 vs. NCBI nr
Match: gi|659078224|ref|XP_008439613.1| (PREDICTED: 60S ribosomal protein L14, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 4.1e-81
Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAAAFASKFSRV    RSLL GLGNNLS SLT SNET+CSSFISQQQRTFIQMRTVLKVV
Sbjct: 1   MAAAFASKFSRVS---RSLLGGLGNNLSTSLTTSNETICSSFISQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCD
Sbjct: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of ClCG01G024770 vs. NCBI nr
Match: gi|449441786|ref|XP_004138663.1| (PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MA+AFASKFSRV   GRSLL GLGNNLS SLT SNETVC+SFI+QQQRTFIQMRTVLKVV
Sbjct: 1   MASAFASKFSRV---GRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+ RCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of ClCG01G024770 vs. NCBI nr
Match: gi|659078222|ref|XP_008439612.1| (PREDICTED: 60S ribosomal protein L14, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-79
Identity = 160/171 (93.57%), Postives = 162/171 (94.74%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQ--QQRTFIQMRTVLK 60
           MAAAFASKFSRV    RSLL GLGNNLS SLT SNET+CSSFISQ  QQRTFIQMRTVLK
Sbjct: 1   MAAAFASKFSRVS---RSLLGGLGNNLSTSLTTSNETICSSFISQLQQQRTFIQMRTVLK 60

Query: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGR 120
           VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GR
Sbjct: 61  VVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGR 120

Query: 121 CDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           CDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 CDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168

[Close]
BLAST of ClCG01G024770 vs. NCBI nr
Match: gi|700194209|gb|KGN49413.1| (hypothetical protein Csa_6G524020 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-79
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAAAFASKFSRV    RSLL GLGNNLS  LTAS E++CSSFISQQQRTFIQMRTVLKVV
Sbjct: 87  MAAAFASKFSRVS---RSLLGGLGNNLSTLLTASKESICSSFISQQQRTFIQMRTVLKVV 146

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCD
Sbjct: 147 DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 206

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 207 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 252

[Close]
BLAST of ClCG01G024770 vs. NCBI nr
Match: gi|778721434|ref|XP_011658297.1| (PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-79
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MAAAFASKFSRVKLVGRSLLDGLGNNLSASLTASNETVCSSFISQQQRTFIQMRTVLKVV 60
           MAAAFASKFSRV    RSLL GLGNNLS  LTAS E++CSSFISQQQRTFIQMRTVLKVV
Sbjct: 1   MAAAFASKFSRVS---RSLLGGLGNNLSTLLTASKESICSSFISQQQRTFIQMRTVLKVV 60

Query: 61  DNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCD 120
           DNSGAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCD
Sbjct: 61  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 120

Query: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 170
           GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

The following BLAST results are available for this feature:
BLAST of ClCG01G024770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HLP_ARATH9.6e-6274.7250S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana GN=HLP PE=2 SV=... [more]
HLL_ARATH2.7e-4858.7950S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana GN=HLL PE=2 SV=... [more]
RL14_RICBR1.6e-3260.8350S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) GN=rplN PE=3 SV... [more]
RL14_RICB81.6e-3260.8350S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) GN=rplN PE=3 ... [more]
RL14_RICPR2.1e-3260.8350S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) GN=rplN PE=... [more]
BLAST of ClCG01G024770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LME7_CUCSA7.1e-8092.90Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401350 PE=3 SV=1[more]
A0A0A0KIN2_CUCSA1.6e-7992.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524020 PE=3 SV=1[more]
A0A0D2UMB5_GOSRA7.6e-7486.98Uncharacterized protein OS=Gossypium raimondii GN=B456_011G046200 PE=3 SV=1[more]
A0A061E8L1_THECC6.4e-7388.17Ribosomal protein L14p/L23e family protein isoform 1 OS=Theobroma cacao GN=TCM_0... [more]
A0A0D2TQN6_GOSRA1.9e-7285.80Uncharacterized protein OS=Gossypium raimondii GN=B456_009G153800 PE=3 SV=1[more]
BLAST of ClCG01G024770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46160.15.4e-6374.72 Ribosomal protein L14p/L23e family protein[more]
AT1G17560.11.5e-4958.79 Ribosomal protein L14p/L23e family protein[more]
ATCG00780.13.8e-2443.33ATCG00780.1 ribosomal protein L14[more]
AT1G04480.15.0e-0833.94 Ribosomal protein L14p/L23e family protein[more]
AT2G33370.15.0e-0833.94 Ribosomal protein L14p/L23e family protein[more]
BLAST of ClCG01G024770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078224|ref|XP_008439613.1|4.1e-8194.67PREDICTED: 60S ribosomal protein L14, mitochondrial isoform X2 [Cucumis melo][more]
gi|449441786|ref|XP_004138663.1|1.0e-7992.90PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus][more]
gi|659078222|ref|XP_008439612.1|1.3e-7993.57PREDICTED: 60S ribosomal protein L14, mitochondrial isoform X1 [Cucumis melo][more]
gi|700194209|gb|KGN49413.1|2.3e-7992.90hypothetical protein Csa_6G524020 [Cucumis sativus][more]
gi|778721434|ref|XP_011658297.1|2.3e-7992.90PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000218Ribosomal_L14P
IPR005745Ribosomal_L14P_bac-type
IPR019972Ribosomal_L14P_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G024770.1ClCG01G024770.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PGENE3DG3DSA:2.40.150.20coord: 44..168
score: 2.6
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 50..169
score: 24
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 13..169
score: 5.9E
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 51..168
score: 3.9
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 50..169
score: 7.2
IPR000218Ribosomal protein L14PunknownSSF50193Ribosomal protein L14coord: 51..168
score: 3.53
IPR005745Ribosomal protein L14P, bacterial-typeTIGRFAMsTIGR01067TIGR01067coord: 51..168
score: 2.2
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 107..133
scor
NoneNo IPR availablePANTHERPTHR11761:SF12PROTEIN HUELLENLOScoord: 13..169
score: 5.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G024770Csa6G524020Cucumber (Chinese Long) v2cuwcgB432
ClCG01G024770MELO3C007120Melon (DHL92) v3.5.1mewcgB515
ClCG01G024770Cla009786Watermelon (97103) v1wcgwmB141
ClCG01G024770Cla97C01G024720Watermelon (97103) v2wcgwmbB089
ClCG01G024770CSPI06G36440Wild cucumber (PI 183967)cpiwcgB453
ClCG01G024770Cucsa.047870Cucumber (Gy14) v1cgywcgB022
ClCG01G024770CmaCh07G000930Cucurbita maxima (Rimu)cmawcgB754
ClCG01G024770CmaCh03G014160Cucurbita maxima (Rimu)cmawcgB576
ClCG01G024770CmoCh07G000920Cucurbita moschata (Rifu)cmowcgB755
ClCG01G024770CmoCh03G014100Cucurbita moschata (Rifu)cmowcgB573
ClCG01G024770Lsi01G001320Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G024770Cp4.1LG10g06150Cucurbita pepo (Zucchini)cpewcgB062
ClCG01G024770Cp4.1LG19g05980Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G024770CsGy6G035780Cucumber (Gy14) v2cgybwcgB399
ClCG01G024770MELO3C007120.2Melon (DHL92) v3.6.1medwcgB510
ClCG01G024770Carg19283Silver-seed gourdcarwcgB0292
ClCG01G024770Carg14996Silver-seed gourdcarwcgB0707
ClCG01G024770CsaV3_6G051890Cucumber (Chinese Long) v3cucwcgB455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G024770Watermelon (Charleston Gray)wcgwcgB093
ClCG01G024770Cucurbita maxima (Rimu)cmawcgB185
ClCG01G024770Cucurbita maxima (Rimu)cmawcgB345
ClCG01G024770Cucurbita moschata (Rifu)cmowcgB176
ClCG01G024770Cucurbita moschata (Rifu)cmowcgB339
ClCG01G024770Melon (DHL92) v3.5.1mewcgB138
ClCG01G024770Watermelon (97103) v1wcgwmB125
ClCG01G024770Cucurbita pepo (Zucchini)cpewcgB027
ClCG01G024770Cucurbita pepo (Zucchini)cpewcgB450
ClCG01G024770Bottle gourd (USVL1VR-Ls)lsiwcgB170
ClCG01G024770Melon (DHL92) v3.6.1medwcgB131
ClCG01G024770Silver-seed gourdcarwcgB0414
ClCG01G024770Watermelon (97103) v2wcgwmbB104
ClCG01G024770Wax gourdwcgwgoB224
ClCG01G024770Wax gourdwcgwgoB242