Carg19283 (gene) Silver-seed gourd

Overview
NameCarg19283
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L14
LocationCucurbita_argyrosperma_scaffold_137 : 154137 .. 156342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTCGAGGGGCAAAAATGGAAAGGAGATTGGTTTGATGTAGAGGCAGAAGTGAATGTTGGTGGGGGCAATAAGATAGCACGCTTGAGGCAGGGGCACGTGTCACTGTCGAAAGCGTGTAAGCTCGTTTCTCAATGGCAATATAATACCCACACCCACGTGTCACGGTCACATGACCCTGCTACGCTGGCATCTCCACGTGTCACGGTAACCCTGACCTTACCCTTGCATCAAATGTGGGCCGTGAGTATAGAAATGATGTATCTGGGCTGTAGCGGGTATGTTTCAGGCCCAGTCTAAACCCTAACCGCAGCTGCAGGGTTCTTGTTGCCATCGTTCGTCTTCGTTTGTTTCCCTCTATGCTGGTTTCGTAACTTGGATTTTGGCGTTAAGAGTTCAGATATGGCTGCTGCTTTGGCTTCGAAATGTTCCCGAGGTATGCGATTTTCTGAAATAGTGGATACTGGAACTTCTTTTGTTCTTTGATTCGGAGATGCTAATGCTATAAGATTTGTAGCCTATTCTTTTAGGATTTTTCCGACTTGAACCTTGATTTGAGCTGATTCAGCTTAGGAAATGCTGGTTTTTCTGTTTCTTTCTGACTGCTAGCAAAACAATTCTAATTTCGTGTTGCTCATCTTATATATTTTCTCCTGTTTTAATGTTACTGATCATATAGCACCGTGGAGTTAAAGTGGCATTTATACATTGGTTTTTTATGCATTTTGTTAAGAAACTAGTTTGAATACTTCTTAAACTAGTTTGAGTGTTTTTTTTTTTTTCCTTACTTGCTGATCTTTCCAACTTGATAGTTTGTGCACACGATGATGTAAAATTTATCTTAACTTTGATATTTCGATATTTTACTTGTCTTATTTTGGTTTGTATTTCTAGTTGTTGTGAAACTCATTTTGGCATATTGTTTCGTGCTCAATGATTCTGGAAAATTAAACTAGTCGGCCGTTCATTGTTGGGTGGACTCGGAAAAAATTTGTCTGGTTCATTGACCGCATCGAATGAGACAGTATGCAGCAGTTTCATCTCGCAGGTCTGGTTCTCTGAAATTTTAATCACTCATCTGAATTTCAACCCTAAAATGATAGTTGAAGGGAAAAAAAAAAATGTATGGTAGATTCATATGCATGAACACGGAGTGTAAGGAAACAGAGGATTACAAAGTTACATGCATCTAACACTATTTATACAAAGATTACTGTGCAAGGGATAGTATGGCTAAAATAGGTATTTAGAAACACAGCATTCTTGCAGATTATCTAGAGAAGTTAGCTATATGGCTAGTATGGATAATTTGGGTATAGTTCAAGATCTAGCTGTTTGCAAATATTTTCCAACTCGGTGTTCATAAACTGAATTTGTGCTTTGCTTCTTAAATTCGATGGTTTTTATTTTTTGCACATCGACATATAATCATTAATATCTCGAAGTGCTACTGAAATGAAGGAAGTGCTGATATATAGTTGTAAGTGGAATAAAATAGTTTGCAAAGATACATTGAAATTTTAAAGTCATTGCAAGTAGCAAAAAATGCTGATGAAAATCGATACACTACTATCAACATTTGATCCTACCTTGTGTATTGTTATCTTTTGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAAGCATTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATAGTCGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTAGTTGTGCGAGCGGCAATGCAAAAAGGTCGTTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTTGTGGATAAGCAAGGTCAACCTATTGGAACTAGAGTGTTTGGCCCAGTCCCTCACGAACTGAGGAAGAAAAAACACGTAAAGATTCTTACTTTGGCCGAGCACATTGCCTGAAACCAATTAATCAGATTGGAGCCGAGGCTCGTAACTTCTTGACGATGCGCCCAAATGTGTACCCCATTGGGATTTATTGGAAGAAGAAAAGGAGTACGCAAAAAACATATGATAAATTGTGTTTGGCAAATAATAAGAGGAAAGCTGTTGCAGTTGCTACTGGCGTTGCTGTTTCTCAGGTTCTTCCCAACATTCTTCCTCACATCATTGCATGA

mRNA sequence

ATGGGAGTCGAGGGGCAAAAATGGAAAGGAGATTGGTTTGATGTAGAGGCAGAAGTGAATGTTGGTGGGGGCAATAAGATAGCACGCTTGAGGCAGGGGCACGTGTCACTGTCGAAAGCGTGTAAGCTCGTTTCTCAATGGCAATATAATACCCACACCCACGTGTCACGGTCACATGACCCTGCTACGCTGGCATCTCCACGTGTCACGGGTTCTTGTTGCCATCGTTCGTCTTCGTTTGTTTCCCTCTATGCTGGTTTCGTAACTTGGATTTTGGCGTTAAGAGTTCAGATATGGCTGCTGCTTTGGCTTCGAAATGTTCCCGAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAAGCATTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATAGTCGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTAGTTGTGCGAGCGGCAATGCAAAAAGGTCGTTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTTGTGGATAAGCAAGGTCAACCTATTGGAACTAGAGTGTTTGGCCCAATTGGAGCCGAGGCTCGTAACTTCTTGACGATGCGCCCAAATGTGTACCCCATTGGGATTTATTGGAAGAAGAAAAGGAGTACGCAAAAAACATATGATAAATTGTGTTTGGCAAATAATAAGAGGAAAGCTGTTGCAGTTGCTACTGGCGTTGCTGTTTCTCAGGTTCTTCCCAACATTCTTCCTCACATCATTGCATGA

Coding sequence (CDS)

ATGGGAGTCGAGGGGCAAAAATGGAAAGGAGATTGGTTTGATGTAGAGGCAGAAGTGAATGTTGGTGGGGGCAATAAGATAGCACGCTTGAGGCAGGGGCACGTGTCACTGTCGAAAGCGTGTAAGCTCGTTTCTCAATGGCAATATAATACCCACACCCACGTGTCACGGTCACATGACCCTGCTACGCTGGCATCTCCACGTGTCACGGGTTCTTGTTGCCATCGTTCGTCTTCGTTTGTTTCCCTCTATGCTGGTTTCGTAACTTGGATTTTGGCGTTAAGAGTTCAGATATGGCTGCTGCTTTGGCTTCGAAATGTTCCCGAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAAGCATTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATAGTCGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTAGTTGTGCGAGCGGCAATGCAAAAAGGTCGTTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTTGTGGATAAGCAAGGTCAACCTATTGGAACTAGAGTGTTTGGCCCAATTGGAGCCGAGGCTCGTAACTTCTTGACGATGCGCCCAAATGTGTACCCCATTGGGATTTATTGGAAGAAGAAAAGGAGTACGCAAAAAACATATGATAAATTGTGTTTGGCAAATAATAAGAGGAAAGCTGTTGCAGTTGCTACTGGCGTTGCTGTTTCTCAGGTTCTTCCCAACATTCTTCCTCACATCATTGCATGA

Protein sequence

MGVEGQKWKGDWFDVEAEVNVGGGNKIARLRQGHVSLSKACKLVSQWQYNTHTHVSRSHDPATLASPRVTGSCCHRSSSFVSLYAGFVTWILALRVQIWLLLWLRNVPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEARNFLTMRPNVYPIGIYWKKKRSTQKTYDKLCLANNKRKAVAVATGVAVSQVLPNILPHIIA
Homology
[Close]
BLAST of Carg19283 vs. NCBI nr
Match: OIV90734.1 (hypothetical protein TanjilG_21865 [Lupinus angustifolius])

HSP 1 Score: 210.3 bits (534), Expect = 8.4e-51
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 106 NVPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKK 165
           N  +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTI+ASVKEAHPNGKVKK
Sbjct: 4   NAKQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKK 63

Query: 166 GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 64  GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 116

[Close]
BLAST of Carg19283 vs. NCBI nr
Match: XP_011658297.1 (PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 40  ISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 99

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 100 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 151

[Close]
BLAST of Carg19283 vs. NCBI nr
Match: KGN49413.1 (hypothetical protein Csa_6G524020 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 126 ISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 185

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 186 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 237

[Close]
BLAST of Carg19283 vs. NCBI nr
Match: XP_022146695.1 (50S ribosomal protein HLP, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 69  ISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 128

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 129 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 180

[Close]
BLAST of Carg19283 vs. NCBI nr
Match: XP_022146696.1 (50S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 40  ISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 99

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 100 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 151

[Close]
BLAST of Carg19283 vs. TAIR10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-43
Identity = 93/113 (82.30%), Postives = 97/113 (85.84%), Query Frame = 0 

Query: 113 TFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 172
           TFIQM TVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEA PNGKVKKG VVYGV
Sbjct: 46  TFIQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGV 105

Query: 173 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQG-------QPIGTRVFGPIGAEAR 219
           VVRAAMQ+GR DGSEV+FDDNAVVLVD +        QPIGTRVFGP+  E R
Sbjct: 106 VVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELR 158

[Close]
BLAST of Carg19283 vs. TAIR10
Match: AT1G17560.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-26
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 109 EQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHP--NGKVKK- 168
           +Q RTFIQM T+LK VDNS AK+VMCIQ+L+GKKGARLGD IV SVKEA+P    KVKK 
Sbjct: 43  QQHRTFIQMGTILKCVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKD 102

Query: 169 ---------GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV---DKQG----------- 219
                               AM KGR DGS+VKFDDNA+V+V   +K+G           
Sbjct: 103 AXXXXXXXXXXXXXXXXXXXAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKM 162

[Close]
BLAST of Carg19283 vs. TAIR10
Match: ATCG00780.1 (ribosomal protein L14)

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-20
Identity = 47/106 (44.34%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 174
           IQ +T L V DNSGA+++MCI+ +    ++ A +GD IVA +KEA PN  +++ +V+  V
Sbjct: 2   IQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 175 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           +VR   +  R +G+ +++DDNA V++D++G P GTRVFG I  E R
Sbjct: 62  IVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELR 107

[Close]
BLAST of Carg19283 vs. TAIR10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 174
           + +   +   DN+GAK +  I ++KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 175 VVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAE 217
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GPIG E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

[Close]
BLAST of Carg19283 vs. TAIR10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 174
           + +   +   DN+GAK +  I ++KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 175 VVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAE 217
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GPIG E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

[Close]
BLAST of Carg19283 vs. Swiss-Prot
Match: sp|Q93Z17|HLP_ARATH (50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 93/113 (82.30%), Postives = 97/113 (85.84%), Query Frame = 0 

Query: 113 TFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 172
           TFIQM TVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEA PNGKVKKG VVYGV
Sbjct: 46  TFIQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGV 105

Query: 173 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQG-------QPIGTRVFGPIGAEAR 219
           VVRAAMQ+GR DGSEV+FDDNAVVLVD +        QPIGTRVFGP+  E R
Sbjct: 106 VVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELR 158

[Close]
BLAST of Carg19283 vs. Swiss-Prot
Match: sp|Q39XZ6|RL14_GEOMG (50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) OX=269799 GN=rplN PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.5e-27
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKG--KKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 174
           IQM+T+L V DNSGA+K+ CI+ L G  +K A +GD IVASV+EA PN KVKKG VV  V
Sbjct: 2   IQMQTILDVADNSGARKLFCIKVLGGSKRKYAGIGDIIVASVREAIPNSKVKKGDVVKAV 61

Query: 175 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           +VR A + GR DGS ++FDDN+ V+++ Q +P+GTR+FGP+  E R
Sbjct: 62  IVRTAKEVGRLDGSYIRFDDNSAVVINNQREPVGTRIFGPVARELR 107

[Close]
BLAST of Carg19283 vs. Swiss-Prot
Match: sp|A8GVC4|RL14_RICB8 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplN PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.8e-27
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 174
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 175 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGP+  E R
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELR 107

[Close]
BLAST of Carg19283 vs. Swiss-Prot
Match: sp|Q1RHN1|RL14_RICBR (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplN PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.8e-27
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 174
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 175 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGP+  E R
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELR 107

[Close]
BLAST of Carg19283 vs. Swiss-Prot
Match: sp|Q9ZCR5|RL14_RICPR (50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplN PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-26
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 115 IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 174
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 175 VVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGP+  E R
Sbjct: 62  IVRTKTGVVRSDGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELR 107

[Close]
BLAST of Carg19283 vs. TrEMBL
Match: tr|A0A1J7FRZ6|A0A1J7FRZ6_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_21865 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.5e-51
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 106 NVPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKK 165
           N  +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTI+ASVKEAHPNGKVKK
Sbjct: 4   NAKQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKK 63

Query: 166 GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 64  GKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 116

[Close]
BLAST of Carg19283 vs. TrEMBL
Match: tr|A0A0A0KIN2|A0A0A0KIN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524020 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 126 ISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 185

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 186 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 237

[Close]
BLAST of Carg19283 vs. TrEMBL
Match: tr|A0A1S4DUR6|A0A1S4DUR6_CUCME (50S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC107990521 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.6e-50
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 107 VPEQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 166
           + +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG
Sbjct: 40  IMQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKG 99

Query: 167 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 100 KVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 151

[Close]
BLAST of Carg19283 vs. TrEMBL
Match: tr|A0A1S2XEX1|A0A1S2XEX1_CICAR (50S ribosomal protein HLP, mitochondrial-like OS=Cicer arietinum OX=3827 GN=LOC101511813 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.1e-50
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 109 EQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKV 168
           +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKV
Sbjct: 42  QQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKV 101

Query: 169 VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 102 VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 151

[Close]
BLAST of Carg19283 vs. TrEMBL
Match: tr|A0A0R0FA21|A0A0R0FA21_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G105500 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.7e-50
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 109 EQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKV 168
           +QQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTI+ASVKEAHPNGKVKKGKV
Sbjct: 42  QQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKV 101

Query: 169 VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPIGAEAR 219
           VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP+  E R
Sbjct: 102 VYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELR 151

The following BLAST results are available for this feature:
BLAST of Carg19283 vs. NCBI nr
Match NameE-valueIdentityDescription
OIV90734.18.4e-5192.92hypothetical protein TanjilG_21865 [Lupinus angustifolius][more]
XP_011658297.11.9e-5093.75PREDICTED: 50S ribosomal protein HLP, mitochondrial [Cucumis sativus][more]
KGN49413.11.9e-5093.75hypothetical protein Csa_6G524020 [Cucumis sativus][more]
XP_022146695.11.9e-5093.7550S ribosomal protein HLP, mitochondrial isoform X1 [Momordica charantia][more]
XP_022146696.11.9e-5093.7550S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia][more]
BLAST of Carg19283 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46160.11.6e-4382.30Ribosomal protein L14p/L23e family protein[more]
AT1G17560.13.9e-2652.52Ribosomal protein L14p/L23e family protein[more]
ATCG00780.17.1e-2044.34ribosomal protein L14[more]
AT1G04480.13.7e-0834.86Ribosomal protein L14p/L23e family protein[more]
AT2G33370.13.7e-0834.86Ribosomal protein L14p/L23e family protein[more]
BLAST of Carg19283 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q93Z17|HLP_ARATH2.8e-4282.3050S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP ... [more]
sp|Q39XZ6|RL14_GEOMG7.5e-2756.6050S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 5377... [more]
sp|A8GVC4|RL14_RICB89.8e-2760.3850S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=... [more]
sp|Q1RHN1|RL14_RICBR9.8e-2760.3850S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp... [more]
sp|Q9ZCR5|RL14_RICPR1.3e-2660.3850S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G... [more]
BLAST of Carg19283 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1J7FRZ6|A0A1J7FRZ6_LUPAN5.5e-5192.92Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_21865 PE=3 S... [more]
tr|A0A0A0KIN2|A0A0A0KIN2_CUCSA1.2e-5093.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524020 PE=3 SV=1[more]
tr|A0A1S4DUR6|A0A1S4DUR6_CUCME1.6e-5093.7550S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC1079... [more]
tr|A0A1S2XEX1|A0A1S2XEX1_CICAR2.1e-5095.4550S ribosomal protein HLP, mitochondrial-like OS=Cicer arietinum OX=3827 GN=LOC1... [more]
tr|A0A0R0FA21|A0A0R0FA21_SOYBN2.7e-5094.55Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G105500 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR019972Ribosomal_L14P_CS
IPR036853Ribosomal_L14_sf
IPR005745Ribosomal_L14P_bac-type
IPR000218Ribosomal_L14P
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19283-RACarg19283-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 114..228
e-value: 4.3E-51
score: 185.7
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 115..219
e-value: 2.7E-42
score: 143.6
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 115..219
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 114..277
score: 21.755
IPR005745Ribosomal protein L14P, bacterial-typeTIGRFAMTIGR01067TIGR01067coord: 115..219
e-value: 1.3E-37
score: 126.3
IPR036853Ribosomal protein L14 superfamilyGENE3DG3DSA:2.40.150.20coord: 114..227
e-value: 5.8E-43
score: 147.5
IPR036853Ribosomal protein L14 superfamilySUPERFAMILYSSF50193Ribosomal protein L14coord: 115..223
NoneNo IPR availablePANTHERPTHR11761:SF354S RIBOSOMAL PROTEIN L38, MITOCHONDRIALcoord: 115..219
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 171..197

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19283Cla009786Watermelon (97103) v1carwmB0292
Carg19283Csa6G524020Cucumber (Chinese Long) v2carcuB0326
Carg19283MELO3C007120Melon (DHL92) v3.5.1carmeB0301
Carg19283ClCG01G024770Watermelon (Charleston Gray)carwcgB0292
Carg19283CSPI06G36440Wild cucumber (PI 183967)carcpiB0332
Carg19283Cucsa.047870Cucumber (Gy14) v1carcgyB0350
Carg19283CmaCh07G000930Cucurbita maxima (Rimu)carcmaB0415
Carg19283CmaCh03G014150Cucurbita maxima (Rimu)carcmaB0413
Carg19283CmoCh07G000920Cucurbita moschata (Rifu)carcmoB0410
Carg19283CmoCh03G014090Cucurbita moschata (Rifu)carcmoB0408
Carg19283Lsi01G001320Bottle gourd (USVL1VR-Ls)carlsiB273
Carg19283Cp4.1LG10g06150Cucurbita pepo (Zucchini)carcpeB0413
Carg19283Cp4.1LG19g05980Cucurbita pepo (Zucchini)carcpeB0415
Carg19283CsGy6G035780Cucumber (Gy14) v2carcgybB0312
Carg19283MELO3C007120.2Melon (DHL92) v3.6.1carmedB0312
Carg19283CsaV3_6G051890Cucumber (Chinese Long) v3carcucB0332
Carg19283Cla97C01G024720Watermelon (97103) v2carwmbB0307
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19283Carg14996Silver-seed gourdcarcarB328
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19283Silver-seed gourdcarcarB327
Carg19283Cucurbita maxima (Rimu)carcmaB0411
Carg19283Cucurbita maxima (Rimu)carcmaB0412
Carg19283Cucurbita moschata (Rifu)carcmoB0406
Carg19283Cucurbita moschata (Rifu)carcmoB0407
Carg19283Cucurbita pepo (Zucchini)carcpeB0412
Carg19283Cucurbita pepo (Zucchini)carcpeB0416
Carg19283Bottle gourd (USVL1VR-Ls)carlsiB274
Carg19283Melon (DHL92) v3.5.1carmeB0300
Carg19283Melon (DHL92) v3.6.1carmedB0311
Carg19283Watermelon (Charleston Gray)carwcgB0293
Carg19283Watermelon (97103) v1carwmB0291
Carg19283Watermelon (97103) v2carwmbB0309
Carg19283Wax gourdcarwgoB0385
Carg19283Wax gourdcarwgoB0386