ClCG01G012880 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G012880
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCoiled-coil domain-containing protein 132
LocationCG_Chr01 : 25905360 .. 25911155 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTTTTTGGACCTAATACCAGTTTGGACTTTTTATGAGCTCTCATACCATCTAAGTATGAATGGAATTAAATATTTTGTTCAATAATTTAAGTGATACATAGCCTTCTTATATAGGAAAAACTCAATATATAAAAGGAAAGAATCGTAATAAGAGCAAAATAAAATTATTGATGATTTTACAGCTAATAAACATATTCACAACCAACACCATGCCTTATGTAGATTACCATTATGTGTGGGGGTACCCAAGCCTATAATTTCAAGAAGGAACCAAGGCAAACTTTTAGTGATCGCCAGAGTCTACCAGGAGGATGACTCCAAACACATAAGCTAACTACTAGTCTGCTGGCAGCTGTCACCTAACTTAACAATTTCCCCTGCTCAATAATTAATTAGCATAGCGAATGGAAACGTACCTTCTTGTCAGTTGAAGCAGGCAGACTGCGTCAAAAAGGACAAAGACAATGCTAGCAACTAGGTTATTTTGAATCATATCTGTAGGTATAACACAAAGTGTAGATAGTAATTTCCTTTCTCGTACTTGAAACTTCTGCTCTCCTTGATTATATTTAAAAGTTATATGGTTCAATGTCACTAGCAGCATCCACAGGCTAAAAAGGTAAAATTATTTTATTGAATTCTGTAGCTATGATTTTCAAATATGGTTATGATTTTTAACGACAAACTTCTCTTTTTACAGTTATGTTGATCGAATAGCGAATGCAAAATGGGAAGTAAAAGAGCTTGGACTAGAGCATAATGGGTTTGTTACCTCAGGATACCCACTTTTTCTTTTCTTTTACATTAGATTTCTATGTTAATATTATATAATATATACACATATACATAGACATACATATAAATGTATTTCCCAAACTATGGTGAAAGGCTGACTTGCTACTCTTATATCAAGTGAAAGTGCTTTAGATGGGAGCTACTACATCTCAAGCTATTAAATGTTAATCTGATGTCATTATCATGTTATGATGGATGAATCAGATTATATCCGCTTGTTTTAAATTTTTTTTAATGTGAAAAAGACCTCCTGTGGCAAGAATGGAGTATATTTTTCTGTGATATGAAAAGACTGTTTTAGTTCCTCATGTTTGGTTTTTTTAAAAAAGAATTTAATCCATTTTGTTGAAAAAGTTTTCAATTTAGTTTCTTATTTTTCTAGCACTTCTCCATTTGGTTCCTTGCTGTCGAGGAATGTTAAAATTGGTCGTTGATATTCATACATAAGTGTGAATTGGCAGGAATTTAGAGGAGAAAAGAAGTCATCTAAGAGAAGAAAATTCAAAATTTCCATCCATTGCTTTTAAATTTGGAAGAGGAAGCAGAAACTTTCCATTTGACTTCTCTTTTACCTCTAAATTTTTATCAATCAGTTTTAACATTCAGACCACTACGGGCTAAATTAAAAAATAATAGAACAGAAGGGACTACATTGATGAGTTTTTGACAGTAAGGACTAGAATTTTTTCTAAAAAACAAAAACATGAGGGACAAACACATTTAGCAATACAAACAATTCTTCCGTTTGAACTGTTTACTTCATATTTTGTATTCCTTTCTTCTCGTCTGCATGGAATTTTTGTATCTCTATCTGAGCTACAACTCTAAATACTGGAGGGGTTTTTTGGGTTGCTCACATAAGGATCTATTTATTTATTTATTATTATTAGTATTATTATTAATTTGTGTGTTTGTGTGTGTAAAGAACCAATCATTTTTTGCCCGTGGCTATCAAATGCACTTTCAAACTGTAAAGAAATTTGCGGGATTTTTTATTTTTCACTATTTTAGCATATTCAGAACAGACAACAAACCATGAATTCAAGCATCCCAGGATACTATAATTTTGTTATTGTTTATGAGTTCATGACTACTATTAGAACATTGTTTAATTAGACTGTATGAATAGGTATGTTGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGTGGAGTTCGTAAGGAGGTAATCAATCTGGCAGAACTGCATTAATTCCAGCATGTTAACTTTTAAAGTTCTAAGTTGCAGAACTACAAGATAGGTTAAGTATTTTGTTTGTTTTTGTTTTGTTTTGATTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTGATATCTGTGAGTGTCCGGGCCAGCTTACGCGCATTTTGACTAATCTCACGGGACAACCCACCTTACCCTACAACATTTGGGTGTCAAGAATCATCAACTAGGATGTTTTTGCAAGGAATATTCTTTATATCCAACTTATCTTAGCAGTCAGCCCCTGATTCATATTCATTCGTTATTATTTTGTATATGTTTTTCTCTATAAAATATTATTTAAAGAGCTAAACATGTCTTCTTTTTAAGTTGCTGAGGTTATATATATGTTTTCTTAATTTCTTGTGTTATATTTTCCTCTCATCTCATGAAAATATATCTTCTTTAGAATTTTCTGATGTTTTCTGCTTCTATTTTATTGCTGGTGTATTTTTTCCCATTCAGTTCATGGAGGAATAACCATCTCAGCCAACGATTCTAATGTTATTCTTATTTTTCAAAACAATCTGTCTATTAACATATGTTGATCTAAATTTGGGATATTACTTGCATGTATGTTTTCATATGTTTTTTGGATTGTCCACTCAATGACCTGGACTAATAATGTTAGAGTAATAAAATAGCAAGGCTACTTGTTTGGACTTGAGAAAAATATTGTTTTTCTTTCTGCAGTTAACACAAGTGATGTTTATCTTAGAAGGAAAAGCGTTTTTGTTGTAACAATTTTGCTTCTCCCCATCATTAATATTAGGTTGGGCCAGACAAAAGAAAAGGCAAAAAAATAAAATAACAAAATAGCAAAATAAAATAAAATAAAAACATAGGCCTAGGCTCAGCTTCGGCTAAGTGAGTGGAATACCCTACTTAGGTTATGATCATGTTGGCGTAGGCTCTAAAAGTTAAGTACATGGTTAGCTTGTAAGTTTGGCTCAATAGATCAATGTTTAGATTTGATTTCACTTTTTAGATCTCTTCCATGGTTTAGTCACTTCTTAGTTGAAAATTATTTTAGCTTCTTCTTGGAGTTTGCAAATTCAAGACTTTTGTTTGAATTGGAAGACCTTTATTTTCTCTATGTAATCAAGCATCTTATTATGATTTTACTTTTTGATTTTTTGTATTTCTTGCATCTTGAATTGGATATGATGAGGGTGTTATGGGGTGTCAAATTAGTTGAGATGTCCGGATCGTCCTACCGATCTTGATTTACTTTTTTGGATATCTTGTTTCTTTGTCATTGAGCTATTGCTCTTTTCATTATATCAATGAAAAGTTTTGTTTCCGTTTCAAAAAAAATTGAAAATTTATTTATAAAATAAAATTTATATTTATTAGATTATGTTTTTTATTAGATTTTATATTTTAAAGTTTCCTCCTAAATTTTGTTTCTAAAAGTTTGTTAAAGTTTACAAATTCCTTTTATTTTTTCTAGAATACTATATAAATATTATAAATTAATAATTTTTTATTTATTTATAATTTAGGTTATGCATTCATACATAGAATATATATTTATAGATCATGGGTCTTGATCTTTTTCGAGATAAGTAATGGCATCCAATTCGAAGAATTGATAAGGTTCGGTTGGATTCCAAAATCTGATTTTTTCTTTTTAACTGGGTTTGGAATGGCTATCGGTCGGCCTTTGAGCCTCAGGCTGCTTGATTCAGTGGCTTGTTTCACAATCATGGTATCCTGTTAATAGAAGACAGACTAATTAAGTATCTTCTGTGGTTTGATTTTTTGGCCCTGGAGTAAACAATGACAATTTTTCTTGTTGAAGTTCAAGTTCTTCTGTTTATTTAGAGACGCTTCGAGTATACTGTACTGATCAGGTTAAAGGGATGTATATACCTTAGCTTTCAAACTATCCATGGATTATTATTCTCTCCATGAGTGTAATTGCTTTTGAAACTCGGTATGTTTGACATTTAAAGGTTCAAGACGTCCTCTTGGAGTATGGACTGGATATCGTTGCAGAAATTCTTATTGAAGGTATATCACGAATAAAGAGATGTTCAGATGAAGGACGCGCTCTCATGTCGTTAGATCTTCAGGTATCTATGAGCCATTCCACAGATTACTTTCTGCTTACTGCATTACTTACAACTTCCCATCTCTTCATTTCTATTATGCTGTTTGATGATGCACTCATTTTTTTTTTTTTTTCAGGTGTTAATCAATGGCTTGCAACATTTAGTTTCAGCGAATGTGAAGCCTAAATTACAAATGGTTGAGACCTTCATTAAGGTAACCCTGATCTTCAAATTACTGTGAACTGATGAGAATAAACTTTTTGTGGCCTACTTCAAACTTGATTGACTACTATGTACTGTTCGAACTGTTTTTAAAGTCTATAATGTATTTAACTTGCTAATGATGCATCATCAAACAGGCGTACTACCTCCCAGAAACTGAATATGTACACTGGGCACGTGCTCACCCGGTAAGAAACTTACCTTGAACTGAGAAAAGTTGGAAATATTCATGACATGCAAAACGTTTAAGAGTCCCATTAGAATGCCATTGTTTTAGTTCAACATCAATATAAAGCTTAATCTGTTTTTGTAAGTTCAACAATTGCAAGGTTGGAATCAGACCAACCATTATTGTGGTAATTGGAAATTCATTGAGCTAGGTTCGGATTGGCAGCTTAAACAATATATATCACTAATTTGTATCCATATATGAATACTGATTTGGATGGCATGAAATGTTTGTTTTTAATGAAAATAGCTTTGTGAATGTTTTTAATTTTTATCAGGGACTAACATTTCTGCTACTCCCATTGTGACAACGTGTTTCTGTCGACTTCAATATTTAAATCTGACTACTTGTTCATGGCTTGGAGCTTTGTCCTGTTTTTGCAGGAATACAGCAAGAGCCAAGTTATCGGTTTGGTTAACCTGGTGGCATCGATGAAAGGGTGGAAGAGGAAAACCCGGTTGGAAATATTGGAGAAGATTGAGTGAAACAATCATAATTTTGGATAATTATGTACGAACGAAGTTTTTGAATCACTTCACATTCTTTTTTTCTCCCATTGCTGTTCATTATAGGAAGAAATAATGTATTTTCAAAATATTATCGATCATCTTAGTTCTCCAGTTTGTATAGTTATTAATATCTCGTTTGAAGATCATAATTCTGCAATCAAAGATTAAAAATGTAAATTCTGCAGACGAGTTGTTTATGGTAGTAAAACGAGCATATAATGCTAGTTTTATTTCTGATTTTTCAATCCAAATGC

mRNA sequence

TTTTTTTTTTTTTGGACCTAATACCAGTTTGGACTTTTTATGAGCTCTCATACCATCTAAGTATGAATGGAATTAAATATTTTGTTCAATAATTTAAGTGATACATAGCCTTCTTATATAGGAAAAACTCAATATATAAAAGGAAAGAATCGTAATAAGAGCAAAATAAAATTATTGATGATTTTACAGCTAATAAACATATTCACAACCAACACCATGCCTTATGTAGATTACCATTATGTGTGGGGGTACCCAAGCCTATAATTTCAAGAAGGAACCAAGGCAAACTTTTAGTGATCGCCAGAGTCTACCAGGAGGATGACTCCAAACACATAAGCTAACTACTAGTCTGCTGGCAGCTGTCACCTAACTTAACAATTTCCCCTGCTCAATAATTAATTAGCATAGCGAATGGAAACGTACCTTCTTGTCAGTTGAAGCAGGCAGACTGCGTCAAAAAGGACAAAGACAATGCTAGCAACTAGGTTATTTTGAATCATATCTGTAGGTATAACACAAAGTGTAGATAGTAATTTCCTTTCTCGTACTTGAAACTTCTGCTCTCCTTGATTATATTTAAAAGTTATATGGTTCAATGTCACTAGCAGCATCCACAGGCTAAAAAGGTAAAATTATTTTATTGAATTCTGTAGCTATGATTTTCAAATATGGTTATGATTTTTAACGACAAACTTCTCTTTTTACAGTTATGTTGATCGAATAGCGAATGCAAAATGGGAAGTAAAAGAGCTTGGACTAGAGCATAATGGGTATGTTGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGTGGAGTTCGTAAGGAGGTTCAAGACGTCCTCTTGGAGTATGGACTGGATATCGTTGCAGAAATTCTTATTGAAGGTATATCACGAATAAAGAGATGTTCAGATGAAGGACGCGCTCTCATGTCGTTAGATCTTCAGGTGTTAATCAATGGCTTGCAACATTTAGTTTCAGCGAATGTGAAGCCTAAATTACAAATGGTTGAGACCTTCATTAAGGCGTACTACCTCCCAGAAACTGAATATGTACACTGGGCACGTGCTCACCCGGAATACAGCAAGAGCCAAGTTATCGGTTTGGTTAACCTGGTGGCATCGATGAAAGGGTGGAAGAGGAAAACCCGGTTGGAAATATTGGAGAAGATTGAGTGAAACAATCATAATTTTGGATAATTATGTACGAACGAAGTTTTTGAATCACTTCACATTCTTTTTTTCTCCCATTGCTGTTCATTATAGGAAGAAATAATGTATTTTCAAAATATTATCGATCATCTTAGTTCTCCAGTTTGTATAGTTATTAATATCTCGTTTGAAGATCATAATTCTGCAATCAAAGATTAAAAATGTAAATTCTGCAGACGAGTTGTTTATGGTAGTAAAACGAGCATATAATGCTAGTTTTATTTCTGATTTTTCAATCCAAATGC

Coding sequence (CDS)

ATGTCGTTAGATCTTCAGGTGTTAATCAATGGCTTGCAACATTTAGTTTCAGCGAATGTGAAGCCTAAATTACAAATGGTTGAGACCTTCATTAAGGCGTACTACCTCCCAGAAACTGAATATGTACACTGGGCACGTGCTCACCCGGAATACAGCAAGAGCCAAGTTATCGGTTTGGTTAACCTGGTGGCATCGATGAAAGGGTGGAAGAGGAAAACCCGGTTGGAAATATTGGAGAAGATTGAGTGA

Protein sequence

MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Homology
[Close]
BLAST of ClCG01G012880 vs. Swiss-Prot
Match: VPS50_HUMAN (Syndetin OS=Homo sapiens GN=VPS50 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-07
Identity = 31/82 (37.80%), Postives = 40/82 (48.78%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           M LD Q  +  L+ L      P  + VET+IKAYYL E +   W + H EYS  Q+  LV
Sbjct: 877 MQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLV 936

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N V       +K R ++L  I+
Sbjct: 937 N-VCLGSHINKKARQKLLAAID 957

[Close]
BLAST of ClCG01G012880 vs. Swiss-Prot
Match: VPS50_MOUSE (Syndetin OS=Mus musculus GN=Vps50 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-07
Identity = 31/82 (37.80%), Postives = 40/82 (48.78%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           M LD Q  +  L+ L      P  + VET+IKAYYL E +   W + H EYS  Q+  LV
Sbjct: 877 MQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLV 936

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N V       +K R ++L  I+
Sbjct: 937 N-VCLGSHINKKARQKLLAAID 957

[Close]
BLAST of ClCG01G012880 vs. Swiss-Prot
Match: VPS50_CHICK (Syndetin OS=Gallus gallus GN=VPS50 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 30/82 (36.59%), Postives = 39/82 (47.56%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           M LD Q  +  L+ L      P  + VET+IKAYYL E +   W + H EYS   +  LV
Sbjct: 862 MQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKHLTNLV 921

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N V       +K R ++L  I+
Sbjct: 922 N-VCLGSHINKKARQKLLAAID 942

[Close]
BLAST of ClCG01G012880 vs. Swiss-Prot
Match: VPS50_RAT (Syndetin OS=Rattus norvegicus GN=Vps50 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-06
Identity = 30/82 (36.59%), Postives = 39/82 (47.56%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           M LD Q  +  L+ L      P  + VE +IKAYYL E +   W + H EYS  Q+  LV
Sbjct: 877 MQLDFQQFLMKLEKLTDIRPIPDKEFVEIYIKAYYLTENDMERWIKEHREYSTKQLTNLV 936

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N V       +K R ++L  I+
Sbjct: 937 N-VCLGSHINKKARQKLLAAID 957

[Close]
BLAST of ClCG01G012880 vs. TrEMBL
Match: V7AFI6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G088000g PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQ+IGL+
Sbjct: 1032 MSLDLQVLINGLQHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIIGLI 1091

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRL+ILEKIE
Sbjct: 1092 NLVATMKGWKRKTRLDILEKIE 1113

[Close]
BLAST of ClCG01G012880 vs. TrEMBL
Match: A0A0L9V6K5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g144500 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEY+KSQ+IGL+
Sbjct: 1124 MSLDLQVLINGLQHFVSVNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYTKSQIIGLI 1183

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRL+ILEKIE
Sbjct: 1184 NLVATMKGWKRKTRLDILEKIE 1205

[Close]
BLAST of ClCG01G012880 vs. TrEMBL
Match: A0A0S3SC98_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G173800 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEY+KSQ+IGL+
Sbjct: 1037 MSLDLQVLINGLQHFVSVNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYTKSQIIGLI 1096

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRL+ILEKIE
Sbjct: 1097 NLVATMKGWKRKTRLDILEKIE 1118

[Close]
BLAST of ClCG01G012880 vs. TrEMBL
Match: I1LRA9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G083200 PE=4 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH V+ NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQ++GLV
Sbjct: 1047 MSLDLQVLINGLQHFVALNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIVGLV 1106

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRL+ILEKIE
Sbjct: 1107 NLVATMKGWKRKTRLDILEKIE 1128

[Close]
BLAST of ClCG01G012880 vs. TrEMBL
Match: A0A0D2QC33_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G089000 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           MSLDLQVLINGLQH VS NVKPKLQ+VETFIKAYYLPETEYVHWARAHPEYSK+Q++GL+
Sbjct: 584 MSLDLQVLINGLQHFVSINVKPKLQIVETFIKAYYLPETEYVHWARAHPEYSKNQIVGLI 643

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           NLVASMKGWKRKTRLE+LEKIE
Sbjct: 644 NLVASMKGWKRKTRLEVLEKIE 665

[Close]
BLAST of ClCG01G012880 vs. TAIR10
Match: AT2G27900.1 (AT2G27900.1 Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515))

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-37
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH V   VKPKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLV
Sbjct: 1039 MSLDLQVLINGLQHFVPTKVKPKLQIVETFIKAYYLPETEYVHWARAHPEYTKAQVVGLV 1098

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRLE++EKIE
Sbjct: 1099 NLVATMKGWKRKTRLEVIEKIE 1120

[Close]
BLAST of ClCG01G012880 vs. NCBI nr
Match: gi|778659345|ref|XP_011654229.1| (PREDICTED: coiled-coil domain-containing protein 132 isoform X2 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           MSLD QVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHWAR+HPEYSKSQVIGLV
Sbjct: 899 MSLDFQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEYVHWARSHPEYSKSQVIGLV 958

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N+VASMKGWKRKTRLEILEKIE
Sbjct: 959 NMVASMKGWKRKTRLEILEKIE 980

[Close]
BLAST of ClCG01G012880 vs. NCBI nr
Match: gi|659071827|ref|XP_008462112.1| (PREDICTED: coiled-coil domain-containing protein 132 isoform X2 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 1   MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
           MSLDLQVLINGLQH VSANVKPKLQMV+TFIKAYYLPETEYVHWAR+HPEYSKSQ+IGLV
Sbjct: 899 MSLDLQVLINGLQHFVSANVKPKLQMVDTFIKAYYLPETEYVHWARSHPEYSKSQIIGLV 958

Query: 61  NLVASMKGWKRKTRLEILEKIE 83
           N+VASMKGWKRKTRLEILEKIE
Sbjct: 959 NMVASMKGWKRKTRLEILEKIE 980

[Close]
BLAST of ClCG01G012880 vs. NCBI nr
Match: gi|778659342|ref|XP_011654226.1| (PREDICTED: coiled-coil domain-containing protein 132 isoform X1 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLD QVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHWAR+HPEYSKSQVIGLV
Sbjct: 1012 MSLDFQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEYVHWARSHPEYSKSQVIGLV 1071

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            N+VASMKGWKRKTRLEILEKIE
Sbjct: 1072 NMVASMKGWKRKTRLEILEKIE 1093

[Close]
BLAST of ClCG01G012880 vs. NCBI nr
Match: gi|659071825|ref|XP_008462106.1| (PREDICTED: coiled-coil domain-containing protein 132 isoform X1 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH VSANVKPKLQMV+TFIKAYYLPETEYVHWAR+HPEYSKSQ+IGLV
Sbjct: 1012 MSLDLQVLINGLQHFVSANVKPKLQMVDTFIKAYYLPETEYVHWARSHPEYSKSQIIGLV 1071

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            N+VASMKGWKRKTRLEILEKIE
Sbjct: 1072 NMVASMKGWKRKTRLEILEKIE 1093

[Close]
BLAST of ClCG01G012880 vs. NCBI nr
Match: gi|593197541|ref|XP_007132358.1| (hypothetical protein PHAVU_011G088000g [Phaseolus vulgaris])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1    MSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLV 60
            MSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQ+IGL+
Sbjct: 1032 MSLDLQVLINGLQHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIIGLI 1091

Query: 61   NLVASMKGWKRKTRLEILEKIE 83
            NLVA+MKGWKRKTRL+ILEKIE
Sbjct: 1092 NLVATMKGWKRKTRLDILEKIE 1113

The following BLAST results are available for this feature:
BLAST of ClCG01G012880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VPS50_HUMAN5.6e-0737.80Syndetin OS=Homo sapiens GN=VPS50 PE=1 SV=3[more]
VPS50_MOUSE5.6e-0737.80Syndetin OS=Mus musculus GN=Vps50 PE=1 SV=2[more]
VPS50_CHICK2.1e-0636.59Syndetin OS=Gallus gallus GN=VPS50 PE=2 SV=1[more]
VPS50_RAT2.8e-0636.59Syndetin OS=Rattus norvegicus GN=Vps50 PE=1 SV=1[more]
BLAST of ClCG01G012880 vs. TrEMBL
Match NameE-valueIdentityDescription
V7AFI6_PHAVU1.8e-3692.68Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G088000g PE=4 SV=1[more]
A0A0L9V6K5_PHAAN3.1e-3691.46Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g144500 PE=4 SV=1[more]
A0A0S3SC98_PHAAN3.1e-3691.46Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G173800 PE=... [more]
I1LRA9_SOYBN4.0e-3691.46Uncharacterized protein OS=Glycine max GN=GLYMA_12G083200 PE=4 SV=2[more]
A0A0D2QC33_GOSRA4.0e-3690.24Uncharacterized protein OS=Gossypium raimondii GN=B456_009G089000 PE=4 SV=1[more]
BLAST of ClCG01G012880 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27900.11.4e-3786.59 Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514)... [more]
BLAST of ClCG01G012880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659345|ref|XP_011654229.1|8.8e-3795.12PREDICTED: coiled-coil domain-containing protein 132 isoform X2 [Cucumis sativus... [more]
gi|659071827|ref|XP_008462112.1|8.8e-3793.90PREDICTED: coiled-coil domain-containing protein 132 isoform X2 [Cucumis melo][more]
gi|778659342|ref|XP_011654226.1|8.8e-3795.12PREDICTED: coiled-coil domain-containing protein 132 isoform X1 [Cucumis sativus... [more]
gi|659071825|ref|XP_008462106.1|8.8e-3793.90PREDICTED: coiled-coil domain-containing protein 132 isoform X1 [Cucumis melo][more]
gi|593197541|ref|XP_007132358.1|2.6e-3692.68hypothetical protein PHAVU_011G088000g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019514DUF2451_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G012880.1ClCG01G012880.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019514Protein of unknown function DUF2451, C-terminalPFAMPF10474DUF2451coord: 1..82
score: 4.7
NoneNo IPR availablePANTHERPTHR13258UNCHARACTERIZEDcoord: 1..82
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G012880Cla001683Watermelon (97103) v1wcgwmB160
ClCG01G012880Bhi08G000091Wax gourdwcgwgoB232
ClCG01G012880CmoCh13G002840Cucurbita moschata (Rifu)cmowcgB179
ClCG01G012880Carg23690Silver-seed gourdcarwcgB0159
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G012880Cucumber (Gy14) v1cgywcgB370
ClCG01G012880Cucurbita maxima (Rimu)cmawcgB151
ClCG01G012880Cucurbita maxima (Rimu)cmawcgB188
ClCG01G012880Cucurbita moschata (Rifu)cmowcgB138
ClCG01G012880Wild cucumber (PI 183967)cpiwcgB027
ClCG01G012880Cucumber (Chinese Long) v2cuwcgB024
ClCG01G012880Melon (DHL92) v3.5.1mewcgB141
ClCG01G012880Cucurbita pepo (Zucchini)cpewcgB453
ClCG01G012880Cucurbita pepo (Zucchini)cpewcgB728
ClCG01G012880Bottle gourd (USVL1VR-Ls)lsiwcgB231
ClCG01G012880Cucumber (Gy14) v2cgybwcgB023
ClCG01G012880Melon (DHL92) v3.6.1medwcgB133
ClCG01G012880Cucumber (Chinese Long) v3cucwcgB026
ClCG01G012880Watermelon (97103) v2wcgwmbB089