Carg23690 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23690
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Coiled-coil domain-containing protein 132 family
Location	Cucurbita_argyrosperma_scaffold_142 : 165605 .. 168234 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTAATCAATTAGGCAGAATTGATTAAGTTTTTTTTCATTTTTGTGTTTTTTATTTTATGAATTCTCTGTTGATAGCTGTTTTCATCATGTTTATAGCTACTGGTTTGTTGGTCCTTTTGTTCTCTGCAATGTATTTAACTTTGATCGAGTCTAATAGATCATTGACTAAGATGCTTTGTAAGCATATTCTTAACACCCAATATATCTGAGCCCACGATTCTGTTTTCATTCTTTATTATTTAAATGTTATATTTGTTTATGTTTTAAGATCTTCCTTTTAAATTGCTGAAGTTATGTATATATGTTTTCTTTCATTTCAGTAAACTTTAAATGAAAAATAAATTAAAATGGTATGCGATGCGTCACGGTCATGCTTGTCCAAGGTGTGTTGCCTATGGCCACATGACAGATGTCCCGGTCTTGTTTGTCCAAGAACCCCTTTTACATGCTTTCATCCTAGATTGGTCTTTACCACGGTCAATACAGGAGTGTATGACCATTCACCAAAACCATGTCTATACCCGACTTTCTGGGTTGTCTCAGACCTTGCAATGGGGCTTTAGCCCCCCAAAAATATATGTTTTGTTAAGATCGGTTAATTCAAAGGGGTGAATCTGGTCCGAAGTTATTAAAGGATGAGATCAATTCAGAAGTACCCTTTTTCCACTCTTGAATTGTTGAGTGGTAGGGTATCGAACAAACATTGAATACGGCAGTCCCGGAGGGTTTCGAAATTTATCGTTTTTGAATTTCTTGGCTTAGTGTGAGATCGAGGGACATGGGGACGTAAAAAAGGGGATCCTATATAAGACCGCGACTAATCCTGAAAGGAATGAATGGAAAAAAGCAGAGAATTGGATTTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCGGTTCCATGGTTGCATGCTCGTTCCAAACCCTTTTGAGCCTCAGGCTGCTTGATTACACAGGCTTTTTTTACAGTCATGGCGTCCTATGAATTCCATTGATTCTTTGTCCCTGTAGTAACCCATGAGATGATTTTTCTTATTGAAGTTCAAGTTCTCTGGTTGATTGAAAGACGTTCTACTGTACTGATTGGGTTAAAGGGATGTATAACCTTAGCTTGATTATTAGTCTCTCCTTATATGTTTGACATTTGTAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTATCTATGAGCTATGCTACAGATTGCATCTTTGCTTACGCCATTATTTATAGGTTCCTTTCTCTTCTTCTCTGTTTTGCTGTTTAATAATGTAATTTTTATTCATTTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGTAAGCCTGAGCTTTAAGTTTTGAGCAAACTTGGTTGACTATTTATCTAAACTGTGTTATTTAACATACTAATGACGTATCATCGAACAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGTAAGAAACGTACCTTGAACTGAGAAAAGTTCGAATATTCACACTTGCAAAGATTGGTACTAAGAAACGTACATTGGTACTTTATCCATTGAGCTAGTTTTGGATTCGCAGCTTAATCCTTACGTATCGCTAATGTGAATCTATATATGAATACTGTGTTGAGGATTGTTGGGAGGGAGTCCCACGATGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAAGAATATATCTTCGTTAGTATGAGGCGTTCTCGTGAAGCCCAAAACAAAATCATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGATCTATAATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTAAGTATCGAATAAATTGTGTACTTTGTTCGAGGGCTCCAAAGGAAGGAGTCAAGTCTCGATTAAGGGGAGGCCATTCGAGGGCTCCATGGACCTCAAGGGAGGCTCTATGGTGTACTATATTTGAGGAGAGGATTGTTGAGGATTTTGGTGGGAGGGAGTCCCACGTTAGCTAATTAAGGGAATGATCCTGGGTTTATAAGTAAGGAATACATCTTCATTGATATGAGGCCTTTCGAGGAAACCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACATACGGAAGTTTTGAAAACTAAATATTTTGATAGCATGACATGTTTATTGCTAATGAAAATAGTGTTGCATTTCTGACACGATTGTGACAACATATTTCTGTAAACATCGATCTTTAAATCCTTGACGCCTTTTTCGTGGCTTAGAGAATTTGCCCGTTTTTGCAGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA

mRNA sequence

TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA

Coding sequence (CDS)

TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA

Protein sequence

YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Homology

[Close]

BLAST of Carg23690 vs. NCBI nr
Match: XP_022964723.1 (syndetin-like isoform X2 [Cucurbita moschata] >XP_022964724.1 syndetin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
           YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS
Sbjct: 770 YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 829

Query: 61  LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
           LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL
Sbjct: 830 LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 889

Query: 121 VASMKGWKRKTRLEILEKIE 141
           VASMKGWKRKTRLEILEKIE
Sbjct: 890 VASMKGWKRKTRLEILEKIE 909

[Close]

BLAST of Carg23690 vs. NCBI nr
Match: XP_022964722.1 (syndetin-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS
Sbjct: 945  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 1004

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL
Sbjct: 1005 LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 1064

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VASMKGWKRKTRLEILEKIE
Sbjct: 1065 VASMKGWKRKTRLEILEKIE 1084

[Close]

BLAST of Carg23690 vs. NCBI nr
Match: XP_023519395.1 (syndetin-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 2.5e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMS
Sbjct: 947  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRVKRCSDEGRALMS 1006

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL
Sbjct: 1007 LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 1066

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VASMKGWKRKTRLEILEKIE
Sbjct: 1067 VASMKGWKRKTRLEILEKIE 1086

[Close]

BLAST of Carg23690 vs. NCBI nr
Match: XP_023519396.1 (syndetin-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519397.1 syndetin-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 2.5e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
           YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMS
Sbjct: 772 YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRVKRCSDEGRALMS 831

Query: 61  LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
           LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL
Sbjct: 832 LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 891

Query: 121 VASMKGWKRKTRLEILEKIE 141
           VASMKGWKRKTRLEILEKIE
Sbjct: 892 VASMKGWKRKTRLEILEKIE 911

[Close]

BLAST of Carg23690 vs. NCBI nr
Match: XP_022970284.1 (syndetin-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 2.8e-71
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS
Sbjct: 954  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 1013

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNL
Sbjct: 1014 LDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEYVHWTRAHPEYSKSQVIGLVNL 1073

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VASMKGWKRKTRLEILEKIE
Sbjct: 1074 VASMKGWKRKTRLEILEKIE 1093

[Close]

BLAST of Carg23690 vs. TAIR10
Match: AT2G27900.1 (Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515))

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-66
Identity = 116/140 (82.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDL+LGEFKHYKTRLAH G+ +EVQ+LLLEYG++I AE L+EG+SRIKRC+DEGR LMS
Sbjct: 981  YVDLMLGEFKHYKTRLAHGGIPQEVQNLLLEYGVEIFAEMLVEGLSRIKRCTDEGRVLMS 1040

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFV   VKPKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLVNL
Sbjct: 1041 LDLQVLINGLQHFVPTKVKPKLQIVETFIKAYYLPETEYVHWARAHPEYTKAQVVGLVNL 1100

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VA+MKGWKRKTRLE++EKIE
Sbjct: 1101 VATMKGWKRKTRLEVIEKIE 1120

[Close]

BLAST of Carg23690 vs. Swiss-Prot
Match: sp|Q96JG6|VPS50_HUMAN (Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-19
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGR 60
           YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGR
Sbjct: 815 YVDALLKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGR 874

Query: 61  ALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIG 120
           ALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS  Q+  
Sbjct: 875 ALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTN 934

Query: 121 LVNLVASMKGWKRKTRLEILEKIE 141
           LVN V       +K R ++L  I+
Sbjct: 935 LVN-VCLGSHINKKARQKLLAAID 957

[Close]

BLAST of Carg23690 vs. Swiss-Prot
Match: sp|Q8CI71|VPS50_MOUSE (Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-19
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGR 60
           YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGR
Sbjct: 815 YVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGR 874

Query: 61  ALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIG 120
           ALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS  Q+  
Sbjct: 875 ALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTN 934

Query: 121 LVNLVASMKGWKRKTRLEILEKIE 141
           LVN V       +K R ++L  I+
Sbjct: 935 LVN-VCLGSHINKKARQKLLAAID 957

[Close]

BLAST of Carg23690 vs. Swiss-Prot
Match: sp|Q5ZKV9|VPS50_CHICK (Syndetin OS=Gallus gallus OX=9031 GN=VPS50 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGR 60
           YVD LL EF+ +  RL     R      V ++L E+ + +   TL+EG + +K+CS+EGR
Sbjct: 800 YVDSLLKEFEEFNRRLNEVSKRVRIPLIVSNILWEHCMRLANRTLVEGYANVKKCSNEGR 859

Query: 61  ALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIG 120
           ALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS   +  
Sbjct: 860 ALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKHLTN 919

Query: 121 LVNLVASMKGWKRKTRLEILEKIE 141
           LVN V       +K R ++L  I+
Sbjct: 920 LVN-VCLGSHINKKARQKLLAAID 942

[Close]

BLAST of Carg23690 vs. Swiss-Prot
Match: sp|F1LSG8|VPS50_RAT (Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-18
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 1   YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGR 60
           YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGR
Sbjct: 815 YVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGR 874

Query: 61  ALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIG 120
           ALM LD Q  +  L+        P  + VE +IKAYYL E +   W + H EYS  Q+  
Sbjct: 875 ALMQLDFQQFLMKLEKLTDIRPIPDKEFVEIYIKAYYLTENDMERWIKEHREYSTKQLTN 934

Query: 121 LVNLVASMKGWKRKTRLEILEKIE 141
           LVN V       +K R ++L  I+
Sbjct: 935 LVN-VCLGSHINKKARQKLLAAID 957

[Close]

BLAST of Carg23690 vs. TrEMBL
Match: tr|A0A1S3CG39|A0A1S3CG39_CUCME (syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.1e-71
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS
Sbjct: 954  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 1013

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVS NVKPKLQMV+TFIKAYYLPETEYVHWAR+HPEYSKSQ+IGLVN+
Sbjct: 1014 LDLQVLINGLQHFVSANVKPKLQMVDTFIKAYYLPETEYVHWARSHPEYSKSQIIGLVNM 1073

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VASMKGWKRKTRLEILEKIE
Sbjct: 1074 VASMKGWKRKTRLEILEKIE 1093

[Close]

BLAST of Carg23690 vs. TrEMBL
Match: tr|I1LRA9|I1LRA9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100788476 PE=4 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-68
Identity = 127/140 (90.71%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAH G+RKEVQDLLL+YGL+IVAETL+EG+SR+KRCSDEGRALMS
Sbjct: 989  YVDLLLGEFKHYKTRLAHGGIRKEVQDLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMS 1048

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFV+ NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQ++GLVNL
Sbjct: 1049 LDLQVLINGLQHFVALNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIVGLVNL 1108

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VA+MKGWKRKTRL+ILEKIE
Sbjct: 1109 VATMKGWKRKTRLDILEKIE 1128

[Close]

BLAST of Carg23690 vs. TrEMBL
Match: tr|I1LKX8|I1LKX8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803274 PE=4 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 3.3e-68
Identity = 127/140 (90.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDL+LGEFKHYKTRLAH G+RKEVQDLLL+YGL+IVAETL+EG+SR+KRCSDEGRALMS
Sbjct: 985  YVDLMLGEFKHYKTRLAHGGIRKEVQDLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMS 1044

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGL HFVS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQV+GLVNL
Sbjct: 1045 LDLQVLINGLHHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVVGLVNL 1104

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VA+MKGWKRKTRL+ILEKIE
Sbjct: 1105 VATMKGWKRKTRLDILEKIE 1124

[Close]

BLAST of Carg23690 vs. TrEMBL
Match: tr|V7AFI6|V7AFI6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G088000g PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.6e-68
Identity = 126/140 (90.00%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAH G+RKE+Q LLL+YGL+IVAETL+EG+SR+KRCSDEGRALMS
Sbjct: 974  YVDLLLGEFKHYKTRLAHGGIRKEIQGLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMS 1033

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQ+IGL+NL
Sbjct: 1034 LDLQVLINGLQHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIIGLINL 1093

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VA+MKGWKRKTRL+ILEKIE
Sbjct: 1094 VATMKGWKRKTRLDILEKIE 1113

[Close]

BLAST of Carg23690 vs. TrEMBL
Match: tr|A0A1U8JLK7|A0A1U8JLK7_GOSHI (syndetin-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107906649 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.3e-68
Identity = 125/140 (89.29%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1    YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMS 60
            YVDLLLGEFKHYKTRLAH G++KEVQDLLL+YGL+IVAETLIEG+SR+KRC+DEGRALMS
Sbjct: 960  YVDLLLGEFKHYKTRLAHGGIQKEVQDLLLDYGLEIVAETLIEGLSRVKRCTDEGRALMS 1019

Query: 61   LDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNL 120
            LDLQVLINGLQHFVS NVKPKLQ+VETFIKAYYLPETEYVHWARAHPEYSK+Q++GL+NL
Sbjct: 1020 LDLQVLINGLQHFVSINVKPKLQIVETFIKAYYLPETEYVHWARAHPEYSKNQIVGLINL 1079

Query: 121  VASMKGWKRKTRLEILEKIE 141
            VASMKGWKRKTRLE+LEKIE
Sbjct: 1080 VASMKGWKRKTRLEVLEKIE 1099

The following BLAST results are available for this feature:

BLAST of Carg23690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964723.1	1.9e-72	100.00	syndetin-like isoform X2 [Cucurbita moschata] >XP_022964724.1 syndetin-like isof...	[more]
XP_022964722.1	1.9e-72	100.00	syndetin-like isoform X1 [Cucurbita moschata]	[more]
XP_023519395.1	2.5e-72	99.29	syndetin-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023519396.1	2.5e-72	99.29	syndetin-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519397.1 syndetin-l...	[more]
XP_022970284.1	2.8e-71	98.57	syndetin-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg23690 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27900.1	2.5e-66	82.86	Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar p...	[more]

BLAST of Carg23690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q96JG6\|VPS50_HUMAN	3.8e-19	37.50	Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3	[more]
sp\|Q8CI71\|VPS50_MOUSE	3.8e-19	37.50	Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2	[more]
sp\|Q5ZKV9\|VPS50_CHICK	1.1e-18	37.50	Syndetin OS=Gallus gallus OX=9031 GN=VPS50 PE=2 SV=1	[more]
sp\|F1LSG8\|VPS50_RAT	1.9e-18	36.81	Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1	[more]

BLAST of Carg23690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CG39\|A0A1S3CG39_CUCME	7.1e-71	96.43	syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1	[more]
tr\|I1LRA9\|I1LRA9_SOYBN	1.5e-68	90.71	Uncharacterized protein OS=Glycine max OX=3847 GN=100788476 PE=4 SV=2	[more]
tr\|I1LKX8\|I1LKX8_SOYBN	3.3e-68	90.71	Uncharacterized protein OS=Glycine max OX=3847 GN=100803274 PE=4 SV=2	[more]
tr\|V7AFI6\|V7AFI6_PHAVU	5.6e-68	90.00	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G088000g PE=4 ...	[more]
tr\|A0A1U8JLK7\|A0A1U8JLK7_GOSHI	7.3e-68	89.29	syndetin-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107906649 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019514	DUF2451_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23690-RA	Carg23690-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019514	Protein of unknown function DUF2451, C-terminal	PFAM	PF10474	DUF2451	coord: 1..140 e-value: 1.5E-42 score: 145.9
None	No IPR available	PANTHER	PTHR13258:SF0	SYNDETIN	coord: 1..140
None	No IPR available	PANTHER	PTHR13258	UNCHARACTERIZED	coord: 1..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23690	Cla001683	Watermelon (97103) v1	carwmB0158
Carg23690	MELO3C004814	Melon (DHL92) v3.5.1	carmeB0171
Carg23690	ClCG01G012880	Watermelon (Charleston Gray)	carwcgB0159
Carg23690	CmoCh13G002840	Cucurbita moschata (Rifu)	carcmoB0234
Carg23690	Bhi08G000091	Wax gourd	carwgoB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23690	Cucumber (Gy14) v2	carcgybB0180
Carg23690	Cucumber (Gy14) v1	carcgyB0205
Carg23690	Cucurbita maxima (Rimu)	carcmaB0222
Carg23690	Cucurbita maxima (Rimu)	carcmaB0223
Carg23690	Cucurbita moschata (Rifu)	carcmoB0233
Carg23690	Cucurbita pepo (Zucchini)	carcpeB0239
Carg23690	Wild cucumber (PI 183967)	carcpiB0192
Carg23690	Cucumber (Chinese Long) v2	carcuB0185
Carg23690	Cucumber (Chinese Long) v3	carcucB0192
Carg23690	Bottle gourd (USVL1VR-Ls)	carlsiB149
Carg23690	Melon (DHL92) v3.6.1	carmedB0174
Carg23690	Watermelon (97103) v1	carwmB0157