ClCG01G006420 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G006420
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionDynein light chain, cytoplasmic
LocationCG_Chr01 : 7230738 .. 7233268 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCTGAACTTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGGGTTGTTCTTCTGTAGATCTTTTCCCCTCCATTTCATGAGATTATAGTGTTGGTGGGTGGGTCATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGCCTCAATGTTCGGGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGTGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGCCTTGCTCTTGCCCTTAAAAAGGTTAGAAGCAAAAAACAAAATCTAACTCTGAACTAACTTTTGGTTCTGAAATGCATTTTCGTGGTTGCGATTATCTGTGAAGTGCAGCTTCATTACCCAGTTTTTGTTTTGTATTTTGAGTTAATGAAAGTTTTTTGGTATGGTTATCGGCTGGTCTGGATGTGTTTGATGAAATGCCTCTTTGGTATTAACATGATTTATTTTCGGGATTTTAAGTCTGGGATTTTTGGGTTTTCACAACATTCGGTTTCTGAATCATGAACGTACTCTGCAGTTGAAGGGGTCTCTGCGGTTTCTGAATCATGTTTTTCCTGAAGGGGTCTCTGAATTAATTAACTAGCTCTGTAAACTGTTCATGTTTTTCCTGATTTGAGCCCTTCCAAACTTTGGGATTAGCTTTTCAATTATAATCGTAGTTAGCAAATTAAATGTTCTTTATTGCTCTCGGGTCCTCCCTAGACTTGTACTTCGGTAGAGGGGATGCCATGAAAAAAGTTGTGGACATGACAATTCTAGTGGGAACTTGCTGCCCACCATTAATTCCACCAAATCTGATAGCCATCCACTACTGACACTTGCCAGTTGCCTTCTCATTTTTCTCTGGTTCTCCGGAAAACTTGTCGGAACAAGGAGGTTGGAGTCATTGTCAAGTGCTTTATGTTATGGTTAAACACTAGATTTAAGAGGAGGTTACTTTATTCTTAGCTGAAATTTCCCCTGAATTTGCCCTTTTCTACTTCATATGTAGTTTTGTCTTTGTGCCATGTGTTTTTATGTAGTCCTTCAAAGTATTAGCTTTATCTATAATGGCTGCTCCCTCTTCTCTACCCTCTCTTCCTAGCTAAGAAATAAAAGCTGTTTGCAAATCTGTTTTAAAAATTGTTTTTTGGTTAAAATATTGTGGTTGATTGATTGTAAAAGTCAATATCGTTGTGTATATAAAAACCACTAATCAAAATTTCAGAAATTTAAAACGAGCAATGACCCTTTTTTTTCCCTCTTTTTATTTTTTTTGATAAGTACGCTATTTGTGAACATATCTAAAAAAAAGTTTCTTTTTTCTTTTTGAACCTTTTTTGTTTAGTTGTAATGATAGGCAACGATTATGTTTTAAATCTTTTTTTGTGAAATATCCAAAGCTCTCACACCTTGTGGAAAACATGCATATGAAGACATAATCATTAATCATTATAGTGGTTTTGCCAGACATTATATTCATTACAACAAAATAATTAAGTCTAAAACCATGAAGCTGCATATTCTTGTGCTTGAGACAAAATGCACTAATTCTTGAAGTTGAAACCTTTTTTGCTCTGAGCTAAGCATTTTCCTCCAGATTAGAGCATATTTGAAAGGTTTATTGTTGTCTCTTGTCTTAAATAAAAAGTGTAACAAACCAACCTTGGCATAGTACAAAAAAGAAACTTAAGAATGACTTTAAAAATCAAATGGTTGCTTGTAGTATGATAGGAGCCAAAACACAATCACAAAATATAAAGGGTAAAGTTCTTACCAGATAAACGACCAAGTAATTCGAGGAATTTGGACTCTTCCTTTCTTGAGATCGCTCTAGACTAAATCAAATGAATCAATGTCTAACTTCTCCCCTCCTCACCCCTTCAATTAATAAATAAAATACCCTAACAACTACTCTAACTAATTATTAATATACCCTTAATAATATTCCAATCATAGTAGGAACCATTCTCTAATCGAATGAAGTTAAGTTTGATGGTAATGAATATGTAATGGTTTTTTCAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCACTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGAATTCCCTTTTCTACACGAGGATCGAACAGGCATCAGATTTAAGTCATGAGCAAGAACAACCAGGTTCAGCCATACTATTCTTTTTGGTTGTATCATTGACTTTATCTTGTTTAAGTGATGTGAATTGTGCATCCATTTTACTGGTTGATGATGAAATTTTTGTTGTGTGCAGTCCAACAGCAAGGATTTGTGATGTTATAAGATTTTATTTTCATGCTTTGTTTTGGTTTGAGGGAGTAAATAAAAAAGTTGTCCC

mRNA sequence

GATTCTGAACTTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGGGTTGTTCTTCTGTAGATCTTTTCCCCTCCATTTCATGAGATTATAGTGTTGGTGGGTGGGTCATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGCCTCAATGTTCGGGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGTGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGCCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCACTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGAATTCCCTTTTCTACACGAGGATCGAACAGGCATCAGATTTAAGTCATGAGCAAGAACAACCAGGTTCAGCCATACTATTCTTTTTGGTTGTATCATTGACTTTATCTTGTTTAAGTGATGTGAATTGTGCATCCATTTTACTGGTTGATGATGAAATTTTTGTTGTGTGCAGTCCAACAGCAAGGATTTGTGATGTTATAAGATTTTATTTTCATGCTTTGTTTTGGTTTGAGGGAGTAAATAAAAAAGTTGTCCC

Coding sequence (CDS)

ATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGCCTCAATGTTCGGGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGTGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGCCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCACTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGA

Protein sequence

MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGTSLKD
Homology
[Close]
BLAST of ClCG01G006420 vs. Swiss-Prot
Match: DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.1e-15
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1 

Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DMP  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAVLLFKS 88

[Close]
BLAST of ClCG01G006420 vs. Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 36  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSF 95
           + V+ +DMP  +Q  A  C  +  +    + D   +A+ +KKEFD  Y P WHCIVG SF
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 67

Query: 96  GSYVTHSLGGFLYFSIDKVYILLFK 121
           GS+VTH    F+YF+I+K  +LLFK
Sbjct: 68  GSFVTHETKNFIYFNINKHSVLLFK 89

[Close]
BLAST of ClCG01G006420 vs. Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-14
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of ClCG01G006420 vs. Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.7e-14
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]
BLAST of ClCG01G006420 vs. Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.7e-14
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]
BLAST of ClCG01G006420 vs. TrEMBL
Match: A0A0A0KPF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G567290 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.4e-68
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]
BLAST of ClCG01G006420 vs. TrEMBL
Match: A0A061E8U7_THECC (Dynein light chain type 1 family protein OS=Theobroma cacao GN=TCM_011012 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-57
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAE+ELERRSKFLN LI KKKA EQQ+Q +RLNV+VRASDMP PLQNRAF CAR+ LD
Sbjct: 1   MDGAELELERRSKFLNSLIQKKKAIEQQDQTERLNVKVRASDMPLPLQNRAFRCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]
BLAST of ClCG01G006420 vs. TrEMBL
Match: A0A067FB59_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033090mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.7e-56
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AE ELERRSKFLN LI KKKA EQQEQ D+LNVRVRASDMP PLQN+AF CAR+ LD
Sbjct: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 125

[Close]
BLAST of ClCG01G006420 vs. TrEMBL
Match: A0A0D2QEM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G174400 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-55
Identity = 110/126 (87.30%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAE+ELERRSKFLN LI KKKA EQQEQ + LNV+VRASDMP  LQN+AF CAR+ LD
Sbjct: 1   MDGAELELERRSKFLNSLIQKKKAIEQQEQNEHLNVKVRASDMPLALQNKAFKCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
            MPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  YMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]
BLAST of ClCG01G006420 vs. TrEMBL
Match: W9T250_9ROSA (Dynein light chain OS=Morus notabilis GN=L484_000858 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.1e-54
Identity = 109/126 (86.51%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAE ELERRSKFL+ LI KKKA EQ+ Q + LNVRVRASDMP PLQ+RAF CAR+ LD
Sbjct: 1   MEGAEEELERRSKFLHSLIEKKKATEQKTQNESLNVRVRASDMPVPLQSRAFRCARDHLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]
BLAST of ClCG01G006420 vs. TAIR10
Match: AT1G23220.1 (AT1G23220.1 Dynein light chain type 1 family protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.6e-54
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+G E+ELERRSKFLN LI KKKA EQQ+Q+D  NVRVRASDMP P QNRAFS +RE+L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLDQ 128

[Close]
BLAST of ClCG01G006420 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 124.0 bits (310), Expect = 6.9e-29
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 32  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 91
           + L VR+ A+DMP  +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIV
Sbjct: 113 EMLTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIV 172

Query: 92  GTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS 128
           G+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Sbjct: 173 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]
BLAST of ClCG01G006420 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-14
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 37  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 96
           +V  +DMP  +Q +A   A + LD      DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFD-VFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 66

Query: 97  SYVTHSLGGFLYFSIDKVYILLFKTA 123
            + THS G F+YF +  +  L+FK A
Sbjct: 67  CFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]
BLAST of ClCG01G006420 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 41  SDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 100
           +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCFD-VTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 101 HSLGGFLYFSIDKVYILLFKTAV 124
           H  G F++FS+  + ILLFK +V
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

[Close]
BLAST of ClCG01G006420 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1 

Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++++DM   +Q  A   A    +    + D   +A  +KKEFD  +G  WHCIVG +FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISAFEKYSVEKD---IAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF +D+  +LLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKAVLLFKS 122

[Close]
BLAST of ClCG01G006420 vs. NCBI nr
Match: gi|449464808|ref|XP_004150121.1| (PREDICTED: dynein light chain 1, cytoplasmic [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]
BLAST of ClCG01G006420 vs. NCBI nr
Match: gi|590696698|ref|XP_007045236.1| (Dynein light chain type 1 family protein [Theobroma cacao])

HSP 1 Score: 229.6 bits (584), Expect = 3.3e-57
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAE+ELERRSKFLN LI KKKA EQQ+Q +RLNV+VRASDMP PLQNRAF CAR+ LD
Sbjct: 1   MDGAELELERRSKFLNSLIQKKKAIEQQDQTERLNVKVRASDMPLPLQNRAFRCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]
BLAST of ClCG01G006420 vs. NCBI nr
Match: gi|802596491|ref|XP_012072280.1| (PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas])

HSP 1 Score: 225.3 bits (573), Expect = 6.2e-56
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAE+ELERRS+FL+ LI KKKA EQQEQ DRLNVRVRASDMP PLQ RAF CAR  LD
Sbjct: 1   MEGAELELERRSRFLSSLIEKKKAKEQQEQYDRLNVRVRASDMPIPLQTRAFRCARNQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHS+GGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSIGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLEQ 128

[Close]
BLAST of ClCG01G006420 vs. NCBI nr
Match: gi|568829841|ref|XP_006469224.1| (PREDICTED: dynein light chain LC6, flagellar outer arm isoform X2 [Citrus sinensis])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AE ELERRSKFLN LI KKKA EQQEQ D+LNVRVRASDMP PLQN+AF CAR+ LD
Sbjct: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 125

[Close]
BLAST of ClCG01G006420 vs. NCBI nr
Match: gi|823134885|ref|XP_012467236.1| (PREDICTED: dynein light chain LC6, flagellar outer arm [Gossypium raimondii])

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55
Identity = 110/126 (87.30%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MDGAE+ELERRSKFLN LI KKKA EQQEQ + LNV+VRASDMP  LQN+AF CAR+ LD
Sbjct: 1   MDGAELELERRSKFLNSLIQKKKAIEQQEQNEHLNVKVRASDMPLALQNKAFKCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
            MPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  YMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

The following BLAST results are available for this feature:
BLAST of ClCG01G006420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DYL1_HELCR9.1e-1545.24Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=... [more]
DYL_DICDI2.6e-1444.71Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1[more]
DYL1_CAEEL5.9e-1445.24Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1[more]
DYL2_DROME7.7e-1445.24Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1[more]
DYL1_DROME7.7e-1445.24Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1[more]
BLAST of ClCG01G006420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPF8_CUCSA8.4e-6898.51Uncharacterized protein OS=Cucumis sativus GN=Csa_5G567290 PE=4 SV=1[more]
A0A061E8U7_THECC2.3e-5789.68Dynein light chain type 1 family protein OS=Theobroma cacao GN=TCM_011012 PE=4 S... [more]
A0A067FB59_CITSI9.7e-5689.68Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033090mg PE=4 SV=1[more]
A0A0D2QEM6_GOSRA2.2e-5587.30Uncharacterized protein OS=Gossypium raimondii GN=B456_002G174400 PE=4 SV=1[more]
W9T250_9ROSA4.1e-5486.51Dynein light chain OS=Morus notabilis GN=L484_000858 PE=4 SV=1[more]
BLAST of ClCG01G006420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23220.11.6e-5478.13 Dynein light chain type 1 family protein[more]
AT5G20110.16.9e-2962.50 Dynein light chain type 1 family protein[more]
AT3G16120.12.2e-1443.02 Dynein light chain type 1 family protein[more]
AT4G27360.11.1e-1345.78 Dynein light chain type 1 family protein[more]
AT4G15930.15.3e-1340.48 Dynein light chain type 1 family protein[more]
BLAST of ClCG01G006420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464808|ref|XP_004150121.1|1.2e-6798.51PREDICTED: dynein light chain 1, cytoplasmic [Cucumis sativus][more]
gi|590696698|ref|XP_007045236.1|3.3e-5789.68Dynein light chain type 1 family protein [Theobroma cacao][more]
gi|802596491|ref|XP_012072280.1|6.2e-5686.72PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas][more]
gi|568829841|ref|XP_006469224.1|1.4e-5589.68PREDICTED: dynein light chain LC6, flagellar outer arm isoform X2 [Citrus sinens... [more]
gi|823134885|ref|XP_012467236.1|3.1e-5587.30PREDICTED: dynein light chain LC6, flagellar outer arm [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G006420.1ClCG01G006420.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2GENE3DG3DSA:3.30.740.10coord: 35..121
score: 2.2
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 1..128
score: 1.3
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 36..121
score: 1.8
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 31..121
score: 1.6
NoneNo IPR availablePANTHERPTHR11886:SF39DYNEIN LIGHT CHAIN TYPE 1-LIKE PROTEINcoord: 1..128
score: 1.3
NoneNo IPR availableunknownSSF54648DLCcoord: 28..121
score: 2.88

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G006420Csa5G567290Cucumber (Chinese Long) v2cuwcgB372
ClCG01G006420MELO3C005289Melon (DHL92) v3.5.1mewcgB019
ClCG01G006420Cla003942Watermelon (97103) v1wcgwmB143
ClCG01G006420Cla97C01G006730Watermelon (97103) v2wcgwmbB089
ClCG01G006420Bhi12G000802Wax gourdwcgwgoB191
ClCG01G006420CSPI05G19410Wild cucumber (PI 183967)cpiwcgB388
ClCG01G006420Cucsa.280210Cucumber (Gy14) v1cgywcgB484
ClCG01G006420CmaCh04G021140Cucurbita maxima (Rimu)cmawcgB638
ClCG01G006420CmaCh15G009710Cucurbita maxima (Rimu)cmawcgB257
ClCG01G006420CmoCh15G010170Cucurbita moschata (Rifu)cmowcgB245
ClCG01G006420Lsi09G006760Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G006420Cp4.1LG13g03550Cucurbita pepo (Zucchini)cpewcgB169
ClCG01G006420Cp4.1LG01g18400Cucurbita pepo (Zucchini)cpewcgB373
ClCG01G006420CsGy5G018910Cucumber (Gy14) v2cgybwcgB340
ClCG01G006420MELO3C005289.2Melon (DHL92) v3.6.1medwcgB017
ClCG01G006420Carg23722Silver-seed gourdcarwcgB0928
ClCG01G006420Carg26062Silver-seed gourdcarwcgB0420
ClCG01G006420CsaV3_5G028260Cucumber (Chinese Long) v3cucwcgB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G006420Watermelon (97103) v2wcgwmbB120
ClCG01G006420Cucurbita moschata (Rifu)cmowcgB638
ClCG01G006420Cucurbita maxima (Rimu)cmawcgB634
ClCG01G006420Cucurbita maxima (Rimu)cmawcgB636
ClCG01G006420Cucurbita moschata (Rifu)cmowcgB636
ClCG01G006420Cucurbita moschata (Rifu)cmowcgB640
ClCG01G006420Cucurbita pepo (Zucchini)cpewcgB370
ClCG01G006420Cucurbita pepo (Zucchini)cpewcgB371
ClCG01G006420Cucumber (Gy14) v2cgybwcgB336
ClCG01G006420Silver-seed gourdcarwcgB0170
ClCG01G006420Silver-seed gourdcarwcgB0856
ClCG01G006420Cucumber (Chinese Long) v3cucwcgB389