Carg23722 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23722
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dynein light chain
Location	Cucurbita_argyrosperma_scaffold_213 : 99110 .. 101431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCTTCGGCTTCCTCCTGGCGCCACTGTTTCTCCTTTTCTTCCCCTTCCCCTTGTCCTCTTCCTTCTTCCGCCAGACATTTTGTCTTTCACCAATGCCGTCCTTGATCGCTTTTTAATTCGAAGAACAAGAAGAACAAGGTGGGGTTCGGTCTTTTTCCCCATTTTGATGAGATTGTAGTGTTGGTGGGTCATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCCCTCAAAAAGGTAAGGCAAAAAAGATTTAAAAAAAAAAAAAAAAAAGAAAATTATACCCTTGAACTCACTTTTGGTTCTGAAATGCGTTTTCCTGACTGCCATTTTGGGTTAGGGGGAGTTTTATAGGATGGTTATTGGACTGTTTTGAGTACTGCCTGGAATGTGTTTGATGAAATGTCTATTTGGTATGAACTAAATTTATTTTCGCCATTTGAAGCCTGGGATTTCTGGGATCTCTACACATTTAGGTTGAAAATTAATGGTTTCTGAATTTTGTTGCACTTGTCCCTCTTTTGGGATTTTACAACATAGTTAATTAACTACCTCTGTAAACTGTGCATGTTTTTCCTGATTTGAGCACTTCCAAAGTTTGGGATTGACCTTTCAATTCCAATTTTGTGTAGCAAATTAAATGTTCTTTATTGCTCTAGAGTCCTCCCTAGATTTGTAATACCGTAGAGAGGGGATGCCATGAAAAAAGTTGTGGACAATGGACATGGCAATTCCTTCCGGTGGGAATTTGCTGCCCACCATTAATTCCATCATAGTTGATAGCTATCCACTACTGACACTGGCCAGCTGCCCTCTGACCGTTCAAAACATGTCGGAACAAGGAGATTGGAGTCATTGTCAAATACTAGATGCTATATTTAAACACTAGATTTTAGAGGAGCCCATCTTATTCTTCTCTTATGCCGTTGAATTTTCCCCTGAATTTGCCATTTTCTACTTCACATGTAGTTATGTCCCATTTGCCATGTGTTTTTTGTTTAATTTTTATGATATGCAAAGATTATGTTTGAAATCTTTGTTGCGAAATATTCAAAGCTCTCTTACCATTCTTGAGGAAAACAAACCTCACAAAAAACATAATCATTATAGTGGCTTGGCCAGCGCCTATATTCATTACAACAAAATAATTATTTACAAGTCTGAAACCATCCTGGTTTAAGTTGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTTGCTTTGATCAATACATTCTGTATTAGAAATCATGACTCTTTCACAATAGTTTGATATTCTCCACTTTGAGCATAAGCTCCAATAGAGATGTATTTCTTACTTAAATTAGCCAACGTGGAACTCCCTCCCAACATTCTTCAACATTCCCGGTGGATGAGAGCATATTTGGAAGGTTTATTGTTGCCTTAAGTTTGATGATAATGAGGTTGTATGGGTTTTGCAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATCGAACAGCAAGAACAACCAGCTTCAATCTCATTATTCTTTTTGGGTTGTATCATTTGGGTTTACCTTGTTTAAGAAACAGATTGTGCAGGTTCTTGTTTGATGTGAGTTGTGCATCAATTTTACTCGTTGGTTATGAAATTTTGTTGTGTGCAGGATTTGTGATGTTACCATGTTAACCTTCAAATGAAAATTAAGACATGAACGCTATATTAGGGTGGCCTAAAAGATTGCGACTCTGTTCCTCACCAATCACCCAAGAATTAGACGGATATAGACTACTCAAGTCAAATCATAAAAGGTTGGTTGGGTTAAAATTATAGTTTGAATTGGATTTTTGAAAAATCTAAATATTCGAGTTAATTGGCAGTTGATATATATATTTTTTTTTGTCAGGTTAACTGAGGTTACAATCCAACTCTACCAAAATTATTATAAAAATTAAGAGTATTTGATATTGTAATTAAAAATTAGT

mRNA sequence

TGCCTTCGGCTTCCTCCTGGCGCCACTGTTTCTCCTTTTCTTCCCCTTCCCCTTGTCCTCTTCCTTCTTCCGCCAGACATTTTGTCTTTCACCAATGCCGTCCTTGATCGCTTTTTAATTCGAAGAACAAGAAGAACAAGGTGGGGTTCGGTCTTTTTCCCCATTTTGATGAGATTGTAGTGTTGGTGGGTCATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCCCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATCGAACAGCAAGAACAACCAGCTTCAATCTCATTATTCTTTTTGGGTTGTATCATTTGGGTTTACCTTGTTTAAGAAACAGATTGTGCAGGTTCTTGTTTGATGTGAGTTGTGCATCAATTTTACTCGTTGGTTATGAAATTTTGTTGTGTGCAGGATTTGTGATGTTACCATGTTAACCTTCAAATGAAAATTAAGACATGAACGCTATATTAGGGTGGCCTAAAAGATTGCGACTCTGTTCCTCACCAATCACCCAAGAATTAGACGGATATAGACTACTCAAGTCAAATCATAAAAGGTTAACTGAGGTTACAATCCAACTCTACCAAAATTATTATAAAAATTAAGAGTATTTGATATTGTAATTAAAAATTAGT

Coding sequence (CDS)

ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCCCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGA

Protein sequence

MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

Homology

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BLAST of Carg23722 vs. NCBI nr
Match: XP_022939677.1 (dynein light chain LC6, flagellar outer arm [Cucurbita moschata])

HSP 1 Score: 270.4 bits (690), Expect = 3.3e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Carg23722 vs. NCBI nr
Match: XP_023551552.1 (dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 9.6e-69
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Carg23722 vs. NCBI nr
Match: XP_022973572.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 3.6e-68
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

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BLAST of Carg23722 vs. NCBI nr
Match: XP_004150121.1 (PREDICTED: dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo] >KGN51478.1 hypothetical protein Csa_5G567290 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 6.4e-65
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Carg23722 vs. NCBI nr
Match: XP_022146325.1 (dynein light chain LC6, flagellar outer arm [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 7.1e-64
Identity = 126/134 (94.03%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERR+KFLNGLI KKKA E QE RDRLN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLIQKKKAVEQQEERDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKR ALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRFALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of Carg23722 vs. TAIR10
Match: AT1G23220.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 203.8 bits (517), Expect = 6.9e-53
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEG E+ELERR+KFLN LI KKKA E Q+ +D  NVRVRASDMP P QNRAFS +RE+L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLDQ 128

[Close]

BLAST of Carg23722 vs. TAIR10
Match: AT5G20110.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 123.6 bits (309), Expect = 9.0e-29
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 32  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 91
           + L VR+ A+DMP  +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIV
Sbjct: 113 EMLTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIV 172

Query: 92  GTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS 128
           G+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Sbjct: 173 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Carg23722 vs. TAIR10
Match: AT3G16120.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.7e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 37  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 96
           +V  +DMP  +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLD-LFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 66

Query: 97  SYVTHSLGGFLYFSIDKVYILLFKTA 123
            + THS G F+YF +  +  L+FK A
Sbjct: 67  CFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Carg23722 vs. TAIR10
Match: AT4G27360.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 41  SDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 100
           +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCF-DVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 101 HSLGGFLYFSIDKVYILLFKTAV 124
           H  G F++FS+  + ILLFK +V
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

[Close]

BLAST of Carg23722 vs. TAIR10
Match: AT4G15930.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-13
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++++DM   +Q  A   A    +    + D   +A  +KKEFD  +G  WHCIVG +FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISAFEKYSVEKD---IAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF +D+  +LLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKAVLLFKS 122

[Close]

BLAST of Carg23722 vs. Swiss-Prot
Match: sp|O02414|DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DMP  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Carg23722 vs. Swiss-Prot
Match: sp|Q86A88|DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-14
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 36  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSF 95
           + V+ +DMP  +Q  A  C  +  +    + D   +A+ +KKEFD  Y P WHCIVG SF
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 67

Query: 96  GSYVTHSLGGFLYFSIDKVYILLFK 121
           GS+VTH    F+YF+I+K  +LLFK
Sbjct: 68  GSFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Carg23722 vs. Swiss-Prot
Match: sp|Q22799|DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Carg23722 vs. Swiss-Prot
Match: sp|Q24117|DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Carg23722 vs. Swiss-Prot
Match: sp|O96860|DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Carg23722 vs. TrEMBL
Match: tr|A0A1S3CSY6|A0A1S3CSY6_CUCME (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.2e-65
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Carg23722 vs. TrEMBL
Match: tr|A0A0A0KPF8|A0A0A0KPF8_CUCSA (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.2e-65
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Carg23722 vs. TrEMBL
Match: tr|A0A2I4G1S5|A0A2I4G1S5_9ROSI (Dynein light chain OS=Juglans regia OX=51240 GN=LOC109003969 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.8e-55
Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAE ELERR+KFLNGLI KKKA + QE  DRLNVRVRA DMP PLQN AF CAR+ LD
Sbjct: 1   MEGAEEELERRSKFLNGLIQKKKAIDQQEQHDRLNVRVRACDMPLPLQNCAFRCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]

BLAST of Carg23722 vs. TrEMBL
Match: tr|A0A061E8U7|A0A061E8U7_THECC (Dynein light chain OS=Theobroma cacao OX=3641 GN=TCM_011012 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 109/126 (86.51%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAE+ELERR+KFLN LI KKKA E Q+  +RLNV+VRASDMP PLQNRAF CAR+ LD
Sbjct: 1   MDGAELELERRSKFLNSLIQKKKAIEQQDQTERLNVKVRASDMPLPLQNRAFRCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSTYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 126

[Close]

BLAST of Carg23722 vs. TrEMBL
Match: tr|A0A2H5Q2P9|A0A2H5Q2P9_CITUN (Dynein light chain OS=Citrus unshiu OX=55188 GN=CUMW_190540 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.8e-54
Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           ME AE ELERR+KFLN LI KKKA E QE  D+LNVRVRASDMP PLQN+AF CAR+ LD
Sbjct: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPL 127
           TAVEPL
Sbjct: 121 TAVEPL 125

The following BLAST results are available for this feature:

BLAST of Carg23722 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939677.1	3.3e-69	100.00	dynein light chain LC6, flagellar outer arm [Cucurbita moschata]	[more]
XP_023551552.1	9.6e-69	99.25	dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]	[more]
XP_022973572.1	3.6e-68	97.76	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]
XP_004150121.1	6.4e-65	95.52	PREDICTED: dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 P...	[more]
XP_022146325.1	7.1e-64	94.03	dynein light chain LC6, flagellar outer arm [Momordica charantia]	[more]

BLAST of Carg23722 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23220.1	6.9e-53	76.56	Dynein light chain type 1 family protein	[more]
AT5G20110.1	9.0e-29	62.50	Dynein light chain type 1 family protein	[more]
AT3G16120.1	3.7e-14	43.02	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.4e-13	45.78	Dynein light chain type 1 family protein	[more]
AT4G15930.1	6.9e-13	40.48	Dynein light chain type 1 family protein	[more]

BLAST of Carg23722 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O02414\|DYL1_HELCR	1.2e-14	45.24	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
sp\|Q86A88\|DYL_DICDI	4.6e-14	44.71	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
sp\|Q22799\|DYL1_CAEEL	7.8e-14	45.24	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
sp\|Q24117\|DYL1_DROME	1.0e-13	45.24	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
sp\|O96860\|DYL2_DROME	1.0e-13	45.24	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of Carg23722 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSY6\|A0A1S3CSY6_CUCME	4.2e-65	95.52	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1	[more]
tr\|A0A0A0KPF8\|A0A0A0KPF8_CUCSA	4.2e-65	95.52	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1	[more]
tr\|A0A2I4G1S5\|A0A2I4G1S5_9ROSI	6.8e-55	88.89	Dynein light chain OS=Juglans regia OX=51240 GN=LOC109003969 PE=3 SV=1	[more]
tr\|A0A061E8U7\|A0A061E8U7_THECC	1.5e-54	86.51	Dynein light chain OS=Theobroma cacao OX=3641 GN=TCM_011012 PE=3 SV=1	[more]
tr\|A0A2H5Q2P9\|A0A2H5Q2P9_CITUN	9.8e-54	88.10	Dynein light chain OS=Citrus unshiu OX=55188 GN=CUMW_190540 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

Vocabulary: **INTERPRO**
Term	Definition
IPR037177	DLC_sf
IPR001372	Dynein_light_chain_typ-1/2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23722-RA	Carg23722-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 31..121 e-value: 1.6E-39 score: 147.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 36..121 e-value: 3.5E-29 score: 100.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..125
IPR037177	Dynein light chain superfamily	GENE3D	G3DSA:3.30.740.10		coord: 33..122 e-value: 1.0E-30 score: 107.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	SSF54648	DLC	coord: 29..121
None	No IPR available	PANTHER	PTHR11886:SF39	DYNEIN LIGHT CHAIN TYPE 1-LIKE PROTEIN	coord: 1..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23722	Cla003942	Watermelon (97103) v1	carwmB0954
Carg23722	Csa5G567290	Cucumber (Chinese Long) v2	carcuB0969
Carg23722	MELO3C005289	Melon (DHL92) v3.5.1	carmeB0933
Carg23722	ClCG01G006420	Watermelon (Charleston Gray)	carwcgB0928
Carg23722	CSPI05G19410	Wild cucumber (PI 183967)	carcpiB0990
Carg23722	CmaCh04G021140	Cucurbita maxima (Rimu)	carcmaB1306
Carg23722	CmaCh15G009710	Cucurbita maxima (Rimu)	carcmaB1305
Carg23722	CmoCh15G010170	Cucurbita moschata (Rifu)	carcmoB1274
Carg23722	Lsi09G006760	Bottle gourd (USVL1VR-Ls)	carlsiB868
Carg23722	Cp4.1LG13g03550	Cucurbita pepo (Zucchini)	carcpeB1318
Carg23722	Cp4.1LG01g18400	Cucurbita pepo (Zucchini)	carcpeB1319
Carg23722	CsGy5G018910	Cucumber (Gy14) v2	carcgybB0941
Carg23722	MELO3C005289.2	Melon (DHL92) v3.6.1	carmedB0939
Carg23722	Cla97C01G006730	Watermelon (97103) v2	carwmbB1002
Carg23722	Bhi12G000802	Wax gourd	carwgoB1104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23722	Carg26062	Silver-seed gourd	carcarB440

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23722	Cucurbita moschata (Rifu)	carcmoB1275