Carg27507 (gene) Silver-seed gourd

NameCarg27507
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_354 : 104518 .. 105063 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA

mRNA sequence

ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA

Coding sequence (CDS)

ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA

Protein sequence

MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASVRFSASLQRRRRFSSDAAIDGEEEEEEVAEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRSR
BLAST of Carg27507 vs. NCBI nr
Match: XP_022932537.1 (uncharacterized protein LOC111439032 [Cucurbita moschata])

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 174/181 (96.13%), Postives = 174/181 (96.13%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV
Sbjct: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60

Query: 61  RFSASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKTA 120
           RFSASLQ     XXXXXXXXXXXXXXXXXXXXXX KMDVLWENFNEELSRSGRSRLMKTA
Sbjct: 61  RFSASLQ-----XXXXXXXXXXXXXXXXXXXXXXEKMDVLWENFNEELSRSGRSRLMKTA 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS 180
           EMEEIEIVKARRRMAELNLSETS AVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS
Sbjct: 121 EMEEIEIVKARRRMAELNLSETSSAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS 176

Query: 181 R 182
           R
Sbjct: 181 R 176

BLAST of Carg27507 vs. NCBI nr
Match: XP_023536234.1 (uncharacterized protein LOC111797464 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 9.9e-69
Identity = 170/180 (94.44%), Postives = 172/180 (95.56%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEP++RCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV
Sbjct: 1   MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60

Query: 61  RFSASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKTA 120
           RFSASLQ     XXXXXXXXXXXXXXXXXXXXXX KMDVLWENFNEELSRSGRSRLMKTA
Sbjct: 61  RFSASLQ-----XXXXXXXXXXXXXXXXXXXXXXEKMDVLWENFNEELSRSGRSRLMKTA 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS 180
           EMEEIEIVKARRRMAELNLSETSGAV TRRKATGKTAFVKALKKLFLLHN SRRNLQTRS
Sbjct: 121 EMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 175

BLAST of Carg27507 vs. NCBI nr
Match: XP_022976943.1 (uncharacterized protein LOC111477161 [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 8.4e-68
Identity = 164/181 (90.61%), Postives = 165/181 (91.16%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEPYSRCGIDSPPLWRLSP ASPISYRQ+TASNRSFRDDQKSD FASV
Sbjct: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPAASPISYRQRTASNRSFRDDQKSDGFASV 60

Query: 61  RFSASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKTA 120
           RFSASLQ       XXXXXXXXXXXXXXXXX    KMDVLWENFNEELSRSGRSRLMKTA
Sbjct: 61  RFSASLQ------RXXXXXXXXXXXXXXXXXVAAEKMDVLWENFNEELSRSGRSRLMKTA 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS 180
           EMEEIEIVK RRRM ELNLSETSGAVATRRKATGKTAFVKALKKLFLLHN SRRNLQTRS
Sbjct: 121 EMEEIEIVKTRRRMTELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 175

Query: 181 R 182
           R
Sbjct: 181 R 175

BLAST of Carg27507 vs. NCBI nr
Match: XP_008461465.1 (PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52
Identity = 147/182 (80.77%), Postives = 160/182 (87.91%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEP++RCG+DSPPLWRLSP+ASPISYRQ+ + +R+FR D  SD   S 
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFR-DTASDGEISN 60

Query: 61  RF-SASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKT 120
           RF SAS Q   XXXXXXXXXXXXXXXXXXXXXXX  KMDVLWENFNEELSRS RSRLMKT
Sbjct: 61  RFPSASFQ---XXXXXXXXXXXXXXXXXXXXXXXAEKMDVLWENFNEELSRSRRSRLMKT 120

Query: 121 AEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTR 180
           AE+EE EIVKAR+RMAELNL ETSGA+AT RKATGKTAFVK LKKLFL+H+ SRRNLQTR
Sbjct: 121 AELEENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTR 178

Query: 181 SR 182
           SR
Sbjct: 181 SR 178

BLAST of Carg27507 vs. NCBI nr
Match: XP_016902690.1 (PREDICTED: uncharacterized protein LOC103500054 isoform X2 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52
Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEP++RCG+DSPPLWRLSP+ASPISYRQ+ + +R+FR D  SD   S 
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFR-DTASDGEISN 60

Query: 61  RF-SASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKT 120
           RF SAS Q     XXXXXXXXXXXXXXXXXXXXX  KMDVLWENFNEELSRS RSRLMKT
Sbjct: 61  RFPSASFQ----RXXXXXXXXXXXXXXXXXXXXXAEKMDVLWENFNEELSRSRRSRLMKT 120

Query: 121 AEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTR 180
           AE+EE EIVKAR+RMAELNL ETSGA+AT RKATGKTAFVK LKKLFL+H+ SRRNLQTR
Sbjct: 121 AELEENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTR 177

Query: 181 SR 182
           SR
Sbjct: 181 SR 177

BLAST of Carg27507 vs. TrEMBL
Match: tr|A0A1S4E3Y6|A0A1S4E3Y6_CUCME (uncharacterized protein LOC103500054 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500054 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEP++RCG+DSPPLWRLSP+ASPISYRQ+ + +R+FR D  SD   S 
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFR-DTASDGEISN 60

Query: 61  RF-SASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKT 120
           RF SAS Q     XXXXXXXXXXXXXXXXXXXXX  KMDVLWENFNEELSRS RSRLMKT
Sbjct: 61  RFPSASFQ----RXXXXXXXXXXXXXXXXXXXXXAEKMDVLWENFNEELSRSRRSRLMKT 120

Query: 121 AEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTR 180
           AE+EE EIVKAR+RMAELNL ETSGA+AT RKATGKTAFVK LKKLFL+H+ SRRNLQTR
Sbjct: 121 AELEENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTR 177

Query: 181 SR 182
           SR
Sbjct: 181 SR 177

BLAST of Carg27507 vs. TrEMBL
Match: tr|A0A1S3CEP4|A0A1S3CEP4_CUCME (uncharacterized protein LOC103500054 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500054 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 147/182 (80.77%), Postives = 160/182 (87.91%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEP++RCG+DSPPLWRLSP+ASPISYRQ+ + +R+FR D  SD   S 
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFR-DTASDGEISN 60

Query: 61  RF-SASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKT 120
           RF SAS Q   XXXXXXXXXXXXXXXXXXXXXXX  KMDVLWENFNEELSRS RSRLMKT
Sbjct: 61  RFPSASFQ---XXXXXXXXXXXXXXXXXXXXXXXAEKMDVLWENFNEELSRSRRSRLMKT 120

Query: 121 AEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTR 180
           AE+EE EIVKAR+RMAELNL ETSGA+AT RKATGKTAFVK LKKLFL+H+ SRRNLQTR
Sbjct: 121 AELEENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTR 178

Query: 181 SR 182
           SR
Sbjct: 181 SR 178

BLAST of Carg27507 vs. TrEMBL
Match: tr|A0A0A0K672|A0A0A0K672_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G283910 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50
Identity = 123/182 (67.58%), Postives = 133/182 (73.08%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVE+DFSFPTALEP++RCGIDSPPLW LSP+ASPISY Q+T+ + +FR D  SD   S 
Sbjct: 1   MAVEEDFSFPTALEPFNRCGIDSPPLWHLSPSASPISYPQQTSCDWNFR-DTASDGEISN 60

Query: 61  RF-SASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKT 120
           RF SASLQ                            KMDVLWENFNEELSRS RSRLMKT
Sbjct: 61  RFPSASLQ-----RRRRFLSDAAVNCEEEEEAEAAEKMDVLWENFNEELSRSRRSRLMKT 120

Query: 121 AEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTR 180
           AE EE E VKARRRMAE NLSETSGA+ATRRK  GKTAFVK LKKLFL+HN SRRNLQTR
Sbjct: 121 AETEENETVKARRRMAEFNLSETSGAMATRRKTMGKTAFVKVLKKLFLMHNNSRRNLQTR 176

Query: 181 SR 182
           SR
Sbjct: 181 SR 176

BLAST of Carg27507 vs. TrEMBL
Match: tr|A0A061FJY8|A0A061FJY8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_036336 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.1e-11
Identity = 60/170 (35.29%), Postives = 82/170 (48.24%), Query Frame = 0

Query: 1   MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MA  ++FSFPT    Y  CGIDSPPLWRLSP ASP  +  + A   S R+++  D F   
Sbjct: 1   MASTEEFSFPTTAALYP-CGIDSPPLWRLSPAASPDVFLDRKAKECSTREEE--DCFPD- 60

Query: 61  RFSASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGRSRLMKTA 120
                 +                            KMD+LWE+FNEEL  S  SR   + 
Sbjct: 61  --RPEKKHQERKSFSYVEKGSKVSSKKVAAEDEEEKMDLLWEDFNEELPTSRSSR--SSG 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHN 171
           +M E+   +A      L LS+ + A+   R+  G   F++ L+KLFL+HN
Sbjct: 121 DMVELGCAQA------LKLSKNNAAMFPPRR-PGMLVFMRVLRKLFLVHN 155

BLAST of Carg27507 vs. TrEMBL
Match: tr|A0A1R3JR28|A0A1R3JR28_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04633 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 0

Query: 5   DDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRS----FRD-------DQK 64
           +DFSFPT  + +  CGIDSPPLWRLSP ASP  +  + +        F D       DQ+
Sbjct: 4   EDFSFPTTADLFP-CGIDSPPLWRLSPAASPDVFLDRKSKQEEEEECFLDIVADKDHDQE 63

Query: 65  SDRFASVRFSASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMDVLWENFNEELSRSGR 124
              F+ +  S  +                             KMD+LWE+FNEEL+RSG 
Sbjct: 64  RKSFSYIEKSKKV-----------------VVDSELEEDAEEKMDILWEDFNEELARSGS 123

Query: 125 SRLMKTAEMEEIEIVKARRRMAELNLSETSGAVA--TRRKATGKTAFVKALKKLFLLHNK 174
           S+                     L LS+T+ A A    R+  G   F++  +KLFLLHN 
Sbjct: 124 SK-------------------EALKLSKTNAASAMFAPRRPAGMLVFMRGFRKLFLLHNS 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022932537.12.4e-7096.13uncharacterized protein LOC111439032 [Cucurbita moschata][more]
XP_023536234.19.9e-6994.44uncharacterized protein LOC111797464 [Cucurbita pepo subsp. pepo][more]
XP_022976943.18.4e-6890.61uncharacterized protein LOC111477161 [Cucurbita maxima][more]
XP_008461465.16.4e-5280.77PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo][more]
XP_016902690.16.4e-5279.67PREDICTED: uncharacterized protein LOC103500054 isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E3Y6|A0A1S4E3Y6_CUCME4.3e-5279.67uncharacterized protein LOC103500054 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CEP4|A0A1S3CEP4_CUCME4.3e-5280.77uncharacterized protein LOC103500054 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0K672|A0A0A0K672_CUCSA1.8e-5067.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G283910 PE=4 SV=1[more]
tr|A0A061FJY8|A0A061FJY8_THECC8.1e-1135.29Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_036336 PE=4 SV=1[more]
tr|A0A1R3JR28|A0A1R3JR28_COCAP1.8e-1032.97Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04633 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27507-RACarg27507-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availablePANTHERPTHR34666FAMILY NOT NAMEDcoord: 4..178
NoneNo IPR availablePANTHERPTHR34666:SF1SUBFAMILY NOT NAMEDcoord: 4..178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None